Result of FASTA (ccds) for
pFN21AA0660
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0660, 482 aa
1>>>pF1KA0660 482 - 482 aa - 482 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.9003+/-0.000989; mu= -4.9451+/- 0.060
mean_var=348.0721+/-70.483, 0's: 0 Z-trim(115.9): 25 B-trim: 3 in 1/53
Lambda= 0.068745
statistics sampled from 16487 (16507) to 16487 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.507), width: 16
Scan time: 3.910
The best scores are: opt bits E(32554)
CCDS3571.1 G3BP2 gene_id:9908|Hs108|chr4 ( 482) 3307 341.4 1.3e-93
CCDS3572.1 G3BP2 gene_id:9908|Hs108|chr4 ( 449) 1646 176.7 4.6e-44
CCDS4319.1 G3BP1 gene_id:10146|Hs108|chr5 ( 466) 1600 172.1 1.1e-42
>>CCDS3571.1 G3BP2 gene_id:9908|Hs108|chr4 (482 aa)
initn: 3307 init1: 3307 opt: 3307 Z-score: 1794.4 bits: 341.4 E(32554): 1.3e-93
Smith-Waterman score: 3307; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)
10 20 30 40 50 60
pF1KA0 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
430 440 450 460 470 480
pF1KA0 RR
::
CCDS35 RR
>>CCDS3572.1 G3BP2 gene_id:9908|Hs108|chr4 (449 aa)
initn: 1701 init1: 1643 opt: 1646 Z-score: 904.5 bits: 176.7 E(32554): 4.6e-44
Smith-Waterman score: 3011; 93.2% identity (93.2% similar) in 482 aa overlap (1-482:1-449)
10 20 30 40 50 60
pF1KA0 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
:: :::::::::::::::::::::::::
CCDS35 PK---------------------------------PRVEAKPEVQSQPPRVREQRPRERP
250 260
310 320 330 340 350 360
pF1KA0 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
270 280 290 300 310 320
370 380 390 400 410 420
pF1KA0 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
330 340 350 360 370 380
430 440 450 460 470 480
pF1KA0 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
390 400 410 420 430 440
pF1KA0 RR
::
CCDS35 RR
>>CCDS4319.1 G3BP1 gene_id:10146|Hs108|chr5 (466 aa)
initn: 1595 init1: 860 opt: 1600 Z-score: 879.6 bits: 172.1 E(32554): 1.1e-42
Smith-Waterman score: 1981; 65.4% identity (80.3% similar) in 482 aa overlap (1-471:1-461)
10 20 30 40 50 60
pF1KA0 MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
::::::::::::::::::::::::.::..::::::.::::::::.:..::: .:::::..
CCDS43 MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
::.::.: ::..::::::::::::::.:::::::::::::..: :.:::::::::::::
CCDS43 IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
::::::::.:::.::::: : .::::.:::: :::: .:: : ..... .:.
CCDS43 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEVEEP-EERQQTPEVVPDDSGT-FYDQAV
130 140 150 160 170
190 200 210 220 230
pF1KA0 VTNGIEEPLEESSHEPEPEPESETKTE------ELKPQ-VEEKNLEELEEKSTTPPPAEP
:.: .:: ::: ::::.:: : . : : ::. : :.. : .::..: ::.
CCDS43 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI
180 190 200 210 220 230
240 250 260 270 280 290
pF1KA0 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHV-KAPVSQPRVEAKPEVQSQPPRV-
.. :: ..:::::::::::::::.: .:::::: :.:.:::: :.::: : : :
CCDS43 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ
240 250 260 270 280 290
300 310 320 330 340
pF1KA0 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE
:.:: :: : ..:: ::::: : ::.: . ::..:.:::::::.:::::..:..:::.
CCDS43 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD
300 310 320 330 340 350
350 360 370 380 390 400
pF1KA0 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT
::.:.:::::::::. :::::::::::::::::::..: .:::::::::::::::::
CCDS43 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT
360 370 380 390 400 410
410 420 430 440 450 460
pF1KA0 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG
::::: :::: : :::::::: .:::: :::: ::::.:: : : :
CCDS43 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RGPP-RGGMVQKPGFGVG
420 430 440 450
470 480
pF1KA0 TGQMEGRFTGQRR
:
CCDS43 RGLAPRQ
460
482 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 19:30:08 2016 done: Wed Nov 2 19:30:09 2016
Total Scan time: 3.910 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]