Result of FASTA (omim) for
pFN21AA0159
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0159, 1401 aa
1>>>pF1KA0159 1401 - 1401 aa - 1401 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0538+/-0.000434; mu= 20.2123+/- 0.027
mean_var=96.5887+/-18.834, 0's: 0 Z-trim(111.3): 26 B-trim: 28 in 1/53
Lambda= 0.130500
statistics sampled from 19847 (19859) to 19847 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.572), E-opt: 0.2 (0.233), width: 16
Scan time: 13.400
The best scores are: opt bits E(85289)
NP_055680 (OMIM: 615638) condensin complex subunit (1401) 9101 1725.2 0
XP_011541021 (OMIM: 609276) PREDICTED: condensin-2 (1360) 209 51.1 6.7e-05
NP_056076 (OMIM: 609276) condensin-2 complex subun (1498) 209 51.1 7.2e-05
>>NP_055680 (OMIM: 615638) condensin complex subunit 1 [ (1401 aa)
initn: 9101 init1: 9101 opt: 9101 Z-score: 9256.5 bits: 1725.2 E(85289): 0
Smith-Waterman score: 9101; 99.8% identity (99.9% similar) in 1401 aa overlap (1-1401:1-1401)
10 20 30 40 50 60
pF1KA0 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MAPQMYEFHLPLSPEELLKSGGVNQYVVQEVLSIKHLPPQLRAFQAAFRAQGPLAMLQHF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 DTIYSILHHFRSIDPGLKEDTLEFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_055 DTIYSILHHFRSIDPGLKEDTLQFLIKVVSRHSQELPAILDDTTLSGSDRNAHLNALKMN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CYALIRLLESFETMASQTNLVDLDLGGKGKKARTKAAHGFDWEEERQPILQLLTQLLQLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IRHLWNHSIIEEEFVSLVTGCCYRLLENPTINHQKNRPTREAITHLLGVALTRYNHMLSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TVKIIQMLQHFEHLAPVLVAAVSLWATDYGMKSIVGEIVREIGQKCPQELSRDPSGTKGF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AAFLTELAERVPAILMSSMCILLDHLDGENYMMRNAVLAAMAEMVLQVLSGDQLEAAARD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TRDQFLDTLQAHGHDVNSFVRSRVLQLFTRIVQQKALPLTRFQAVVALAVGRLADKSVLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 CKNAIQLLASFLANNPFSCKLSDADLAGPLQKETQKLQEMRAQRRTAAASAVLDPEEEWE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AMLPELKSTLQQLLQLPQGEEEIPEQIANTETTEDVKGRIYQLLAKASYKKAIILTREAT
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GHFQESEPFSHIDPEESEETRLLNILGLIFKGPAASTQEKNPRESTGNMVTGQTVCKNKP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NMSDPEESRGNDELVKQEMLVQYLQDAYSFSRKITEAIGIISKMMYENTTTVVQEVIEFF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VMVFQFGVPQALFGVRRMLPLIWSKEPGVREAVLNAYRQLYLNPKGDSARAKAQALIQNL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SLLLVDASVGTIQCLEEILCEFVQKDELKPAVTQLLWERATEKVACCPLERCSSVMLLGM
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MARGKPEIVGSNLDTLVSIGLDEKFPQDYRLAQQVCHAIANISDRRKPSLGKRHPPFRLP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QEHRLFERLRETVTKGFVHPDPLWIPFKEVAVTLIYQLAEGPEVICAQILQGCAKQALEK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LEEKRTSQEDPKESPAMLPTFLLMNLLSLAGDVALQQLVHLEQAVSGELCRRRVLREEQE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HKTKDPKEKNTSSETTMEEELGLVGATADDTEAELIRGICEMELLDGKQTLAAFVPLLLK
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTILEKSPLPIVRSNLMVATG
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
NP_055 VCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTMLEKSPLPIVRSNLMVATG
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLID
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PEPQIAALAKNFFNELSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKD
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 KQTESLVEKLCQRFRTSLTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_055 KQTESLVEKLCQRFRTSRTERQQRDLAYCVSQLPLTERGLRKMLDNFDCFGDKLSDESIF
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRGLDGIKELEIGQAGSQRAPSAKKPS
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRASKKKPKVVFSSDESSEEDLSAEMT
1330 1340 1350 1360 1370 1380
1390 1400
pF1KA0 EDETPKKTTPILRASARRHRS
:::::::::::::::::::::
NP_055 EDETPKKTTPILRASARRHRS
1390 1400
>>XP_011541021 (OMIM: 609276) PREDICTED: condensin-2 com (1360 aa)
initn: 230 init1: 155 opt: 209 Z-score: 209.0 bits: 51.1 E(85289): 6.7e-05
Smith-Waterman score: 209; 22.8% identity (57.4% similar) in 263 aa overlap (1033-1289:781-1038)
1010 1020 1030 1040 1050 1060
pF1KA0 ELLDGKQTLAAFVPLLLKVCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTI
. : : ..:::.:. . ... :
XP_011 ADHSPSSQGSSEAPASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRE
760 770 780 790 800 810
1070 1080 1090 1100 1110 1120
pF1KA0 LEKSPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILK
:: ::.:.... :: ::. .:: . :.. :.: .:: . ...:.:. .
XP_011 LEVCEDVAVRNNVIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQE
820 830 840 850 860 870
1130 1140 1150 1160 1170
pF1KA0 DMVKVKGQVS-EMAVLLIDPEPQIAALAKNFFNELSHKGNAI--YNLLPDIISRLSDPEL
..:: ::.. ... ::: .:.::.... . .: : : . .. . . : .... :
XP_011 EFVKWKGSLFFRFVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEK
880 890 900 910 920 930
1180 1190 1200 1210 1220 1230
pF1KA0 GVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTSLTERQQRDLA--YCVSQLPLTE
. . : .. . : :... :. . . .:..:. ... :.: :
XP_011 HEKYNKFPQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFA
940 950 960 970 980 990
1240 1250 1260 1270 1280 1290
pF1KA0 RGLRKM-LDNFDCFGDKLSDESIFSAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRG
:. . :: . ..: . : . : ..... .: .::. ...: .. :
XP_011 DGILPLDLDASELLSDTF--EVLSSKEIKLLA-MR--SKPDKDLLMEEDDMALANVVMQE
1000 1010 1020 1030 1040
1300 1310 1320 1330 1340 1350
pF1KA0 LDGIKELEIGQAGSQRAPSAKKPSTGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRA
XP_011 AQKKLISQVQKRNFIENIIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFA
1050 1060 1070 1080 1090 1100
>>NP_056076 (OMIM: 609276) condensin-2 complex subunit D (1498 aa)
initn: 230 init1: 155 opt: 209 Z-score: 208.4 bits: 51.1 E(85289): 7.2e-05
Smith-Waterman score: 209; 22.8% identity (57.4% similar) in 263 aa overlap (1033-1289:919-1176)
1010 1020 1030 1040 1050 1060
pF1KA0 ELLDGKQTLAAFVPLLLKVCNNPGLYSNPDLSAAASLALGKFCMISATFCDSQLRLLFTI
. : : ..:::.:. . ... :
NP_056 ADHSPSSQGSSEAPASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRE
890 900 910 920 930 940
1070 1080 1090 1100 1110 1120
pF1KA0 LEKSPLPIVRSNLMVATGDLAIRFPNLVDPWTPHLYARLRDPAQQVRKTAGLVMTHLILK
:: ::.:.... :: ::. .:: . :.. :.: .:: . ...:.:. .
NP_056 LEVCEDVAVRNNVIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQE
950 960 970 980 990 1000
1130 1140 1150 1160 1170
pF1KA0 DMVKVKGQVS-EMAVLLIDPEPQIAALAKNFFNELSHKGNAI--YNLLPDIISRLSDPEL
..:: ::.. ... ::: .:.::.... . .: : : . .. . . : .... :
NP_056 EFVKWKGSLFFRFVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEK
1010 1020 1030 1040 1050 1060
1180 1190 1200 1210 1220 1230
pF1KA0 GVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFRTSLTERQQRDLA--YCVSQLPLTE
. . : .. . : :... :. . . .:..:. ... :.: :
NP_056 HEKYNKFPQSEREKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFA
1070 1080 1090 1100 1110 1120
1240 1250 1260 1270 1280 1290
pF1KA0 RGLRKM-LDNFDCFGDKLSDESIFSAFLSVVGKLRRGAKPEGKAIIDEFEQKLRACHTRG
:. . :: . ..: . : . : ..... .: .::. ...: .. :
NP_056 DGILPLDLDASELLSDTF--EVLSSKEIKLLA-MR--SKPDKDLLMEEDDMALANVVMQE
1130 1140 1150 1160 1170 1180
1300 1310 1320 1330 1340 1350
pF1KA0 LDGIKELEIGQAGSQRAPSAKKPSTGSRYQPLASTASDNDFVTPEPRRTTRRHPNTQQRA
NP_056 AQKKLISQVQKRNFIENIIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFA
1190 1200 1210 1220 1230 1240
1401 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 18:18:41 2016 done: Wed Nov 2 18:18:42 2016
Total Scan time: 13.400 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]