Result of FASTA (ccds) for
pFN21AB9887
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9887, 753 aa
1>>>pF1KB9887 753 - 753 aa - 753 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8917+/-0.000958; mu= 6.8356+/- 0.058
mean_var=255.5413+/-50.435, 0's: 0 Z-trim(113.9): 17 B-trim: 0 in 0/54
Lambda= 0.080231
statistics sampled from 14521 (14531) to 14521 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.76), E-opt: 0.2 (0.446), width: 16
Scan time: 4.200
The best scores are: opt bits E(32554)
CCDS11932.1 TCEB3B gene_id:51224|Hs108|chr18 ( 753) 5154 610.1 4.1e-174
CCDS239.2 TCEB3 gene_id:6924|Hs108|chr1 ( 798) 1551 193.1 1.5e-48
CCDS11931.1 TCEB3C gene_id:162699|Hs108|chr18 ( 546) 1472 183.8 6.5e-46
CCDS59316.1 TCEB3CL2 gene_id:100506888|Hs108|chr18 ( 546) 1420 177.7 4.2e-44
>>CCDS11932.1 TCEB3B gene_id:51224|Hs108|chr18 (753 aa)
initn: 5154 init1: 5154 opt: 5154 Z-score: 3239.3 bits: 610.1 E(32554): 4.1e-174
Smith-Waterman score: 5154; 100.0% identity (100.0% similar) in 753 aa overlap (1-753:1-753)
10 20 30 40 50 60
pF1KB9 MAAGSTTLHAVEKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAGSTTLHAVEKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 HVGDFARDLAARWKKLVLVDRNTRPGPQDPEESASRQRFGEALQDQEKAWGFPENATAPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HVGDFARDLAARWKKLVLVDRNTRPGPQDPEESASRQRFGEALQDQEKAWGFPENATAPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKCPRIAPADSGRYRASPTRTAPLRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKCPRIAPADSGRYRASPTRTAPLRM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PEGPEPAAPGKQPGRGHTHAAQGGPLLCPGCQGQPQGKAVVSHSKGHKSSRQEKRPLCAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PEGPEPAAPGKQPGRGHTHAAQGGPLLCPGCQGQPQGKAVVSHSKGHKSSRQEKRPLCAQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 GDWHSPTLIREKSCGACLREETPRMPSWASARDRQPSDFKTDKEGGQAGSGQRVPALEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GDWHSPTLIREKSCGACLREETPRMPSWASARDRQPSDFKTDKEGGQAGSGQRVPALEEA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 PDSHQKRPQHSHSNKKRPSLDGRDPGNGTHGLSPEEKEQLSNDRETQEGKPPTAHLDRTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PDSHQKRPQHSHSNKKRPSLDGRDPGNGTHGLSPEEKEQLSNDRETQEGKPPTAHLDRTS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 VSSLSEVEEVDMAEEFEQPTLSCEKYLTYDQLRKQKKKTGKSATTALGDKQRKANESKGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VSSLSEVEEVDMAEEFEQPTLSCEKYLTYDQLRKQKKKTGKSATTALGDKQRKANESKGT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 RESWDSAKKLPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDLSEAWMQANYDPLSDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RESWDSAKKLPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDLSEAWMQANYDPLSDS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 DSMTSQAKPEALSSPKFREEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCAQVLRNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DSMTSQAKPEALSSPKFREEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCAQVLRNN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 PDALSDVGEVPYWVLEPVLEGWRPDQLYRRKKDNHALVRETDELRRNHCFQDFKEEKPQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PDALSDVGEVPYWVLEPVLEGWRPDQLYRRKKDNHALVRETDELRRNHCFQDFKEEKPQE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 NKTWREQYLRLPDAPEQRLRVMTTNIRSARGNNPNGREAKMICFKSVAKTPYDTSRRQEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NKTWREQYLRLPDAPEQRLRVMTTNIRSARGNNPNGREAKMICFKSVAKTPYDTSRRQEK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 SAGDADPENGEIKPASKPAGSSHTPSSQSSSGGGRDSSSSILRWLPEKRANPCLSSSNEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAGDADPENGEIKPASKPAGSSHTPSSQSSSGGGRDSSSSILRWLPEKRANPCLSSSNEH
670 680 690 700 710 720
730 740 750
pF1KB9 AAPAAKTRKQAAKKVAPLMAKAIRDYKRRFSRR
:::::::::::::::::::::::::::::::::
CCDS11 AAPAAKTRKQAAKKVAPLMAKAIRDYKRRFSRR
730 740 750
>>CCDS239.2 TCEB3 gene_id:6924|Hs108|chr1 (798 aa)
initn: 1853 init1: 674 opt: 1551 Z-score: 985.1 bits: 193.1 E(32554): 1.5e-48
Smith-Waterman score: 2087; 47.7% identity (71.2% similar) in 791 aa overlap (1-753:27-798)
10 20 30
pF1KB9 MAAGSTTLHAVEKLQVRLATKTEPKKLEKYLQKL
::: :. :..:::::.:::.. .:::: :::.::
CCDS23 MHGGRSCGPRTRREPSSGEEAAPVTAMAAESA-LQVVEKLQARLAANPDPKKLLKYLKKL
10 20 30 40 50
40 50 60 70 80 90
pF1KB9 SALPMTADILAETGIRKTVKRLRKHQHVGDFARDLAARWKKLVLVDRNTRPGPQDPEESA
:.::.:.:::::::. :::. ::::.:::.:::::.:.::::: :.::..: :: :.:
CCDS23 STLPITVDILAETGVGKTVNSLRKHEHVGSFARDLVAQWKKLVPVERNAEPDEQDFEKSN
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB9 SRQRFGEALQDQEKAWG-FPENATAPRSPSHSPEHRRTARRTPPGQQRPHPRSHSREPRA
::.: .::: .:. : . :. : : :.::.::. .: .::: ::..: :
CCDS23 SRKRPRDALQKEEEMEGDYQETWKATGSRSYSPDHRQKKHRKLSELERPHKVSHGHERRD
120 130 140 150 160 170
160 170 180 190
pF1KB9 ERK-CPRIAP--------ADSGRYRASPTRTAPLRM--------PEGPEPAAPGKQPGRG
::: : :..: .: :. .. :. :.: .: : :: . ..::.:
CCDS23 ERKRCHRMSPTYSSDPESSDYGHVQSPPSCTSPHQMYVDHYRSLEEDQEPIVSHQKPGKG
180 190 200 210 220 230
200 210 220 230 240 250
pF1KB9 HTHAAQGGPLLCPGCQ---GQPQGKAVVSHSKGHKSSRQEKRPLCAQGDWHSPTLIREKS
:..: : : . . :.:.::.:::..: ::::...:::. :..: .. .. ::::
CCDS23 HSNAFQD--RLGASQERHLGEPHGKGVVSQNKEHKSSHKDKRPVDAKSDEKASVVSREKS
240 250 260 270 280 290
260 270 280 290 300 310
pF1KB9 CGACLREETPRMPSWASARDRQPSDFKTDKEGGQAGSGQR---VPALEEAPDSHQKRPQH
: .::. : :: .::.. ::. . :: . ::. . .: : : :.: :.:.:
CCDS23 HKALSKEENRRPPSGDNAREKPPSS-GVKKEKDREGSSLKKKCLPPSEAASDNHLKKPKH
300 310 320 330 340 350
320 330 340 350 360
pF1KB9 -----SHSNKKRPSLDGRDPGNGTHGLSPEEKEQLSNDRETQEGKPPTAHLDRTSVSSLS
.. .:.. .::. : :.:. : :. ::. ::. .: ::: : .::: :..::
CCDS23 RDPEKAKLDKSKQGLDSFDTGKGAGDLLPKVKEKGSNNLKTPEGKVKT-NLDRKSLGSLP
360 370 380 390 400 410
370 380 390 400 410 420
pF1KB9 EVEEVDMAEEFEQPTLSCEKYLTYDQLRKQKKKTGKSATTALGDKQRKANESKGTRESWD
.:::.:: .::::::.: :.::.::: ::.::: :...:::::: : :.::.: .. :
CCDS23 KVEETDMEDEFEQPTMSFESYLSYDQPRKKKKKIVKTSATALGDKGLKKNDSKSTGKNLD
420 430 440 450 460 470
430 440 450 460 470 480
pF1KB9 SAKKLPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDLSEAWMQANYDPLSDSDSMTS
:..::: :....::. :::: : . ::. :. : :: .:::: :: . . ..:
CCDS23 SVQKLPKVNKTKSEK--PAGADLAKLRKVPD-VLPVLPDLPLPAIQANYRPLPSLELISS
480 490 500 510 520 530
490 500 510 520 530 540
pF1KB9 -QAKPEALSSPKFREEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCAQVLRNNPDAL
: : .:.:::. .:::.: :::.:.:: :::::. : .. ::.::: .::.:: :..
CCDS23 FQPKRKAFSSPQEEEEAGFTGRRMNSKMQVYSGSKCAYLPKMMTLHQQCIRVLKNNIDSI
540 550 560 570 580 590
550 560 570 580 590 600
pF1KB9 SDVGEVPYWVLEPVLEGWRPDQLYRRKKDNHALVRETDELRRNHCFQDFKEEKPQENKTW
.:: ::: ::::::: :::::: .. ::.:..:::.: . :: .:::::.:.: ..:
CCDS23 FEVGGVPYSVLEPVLERCTPDQLYRIEEYNHVLIEETDQLWKVHCHRDFKEERPEEYESW
600 610 620 630 640 650
610 620 630 640 650 660
pF1KB9 REQYLRLPDAPEQRLRVMTTNIRSARGNNPNGREAKMICFKSVAKTPYDTSRRQEK--SA
::.:::: :: ::::::.: ::. :..:.:.::.::: .:::: : :. ::::: ..
CCDS23 REMYLRLQDAREQRLRVLTKNIQFAHANKPKGRQAKMAFVNSVAKPPRDVRRRQEKFGTG
660 670 680 690 700 710
670 680 690 700 710 720
pF1KB9 GDADPENGEIKPASKPAGSSHTPSSQSSSGGGRDSSSSILRWLPEKRANPCLSSSNEHAA
: : ::. .:::: : ::::. .:. : . . ::. : :.:. : :
CCDS23 GAAVPEKIKIKPAPYPMGSSHASASSISFNPS-----------PEEPAYDGPSTSSAHLA
720 730 740 750 760
730 740 750
pF1KB9 PAAKT------RKQAAKKVAPLMAKAIRDYKRRFSRR
:.... :: ..::.::.:::.:. .: :::::
CCDS23 PVVSSTVSYDPRKPTVKKIAPMMAKTIKAFKNRFSRR
770 780 790
>>CCDS11931.1 TCEB3C gene_id:162699|Hs108|chr18 (546 aa)
initn: 3033 init1: 1425 opt: 1472 Z-score: 937.8 bits: 183.8 E(32554): 6.5e-46
Smith-Waterman score: 2630; 61.2% identity (67.1% similar) in 753 aa overlap (1-753:1-546)
10 20 30 40 50 60
pF1KB9 MAAGSTTLHAVEKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
::::::::.:: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAAGSTTLRAVGKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 HVGDFARDLAARWKKLVLVDRNTRPGPQDPEESASRQRFGEALQDQEKAWGFPENATAPR
::::::::::::::::::::::: : ::::::::::::::::::..::::::::::::::
CCDS11 HVGDFARDLAARWKKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKCPRIAPADSGRYRASPTRTAPLRM
:::::::::::::::::::::::::: ::::::::: ::.:::::: .: ::::::: :
CCDS11 SPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PEGPEPAAPGKQPGRGHTHAAQGGPLLCPGCQGQPQGKAVVSHSKGHKSSRQEKRPLCAQ
:::::::.::.::::::.::::::::: ::::::::.:: ::::::::::
CCDS11 PEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSR---------
190 200 210 220 230
250 260 270 280 290 300
pF1KB9 GDWHSPTLIREKSCGACLREETPRMPSWASARDRQPSDFKTDKEGGQAGSGQRVPALEEA
::
CCDS11 --------------GA--------------------------------------------
310 320 330 340 350 360
pF1KB9 PDSHQKRPQHSHSNKKRPSLDGRDPGNGTHGLSPEEKEQLSNDRETQEGKPPTAHLDRTS
CCDS11 ------------------------------------------------------------
370 380 390 400 410 420
pF1KB9 VSSLSEVEEVDMAEEFEQPTLSCEKYLTYDQLRKQKKKTGKSATTALGDKQRKANESKGT
CCDS11 ------------------------------------------------------------
430 440 450 460 470 480
pF1KB9 RESWDSAKKLPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDLSEAWMQANYDPLSDS
::.: :::::::::::::::::::::::::::::::::: :::::::::: ::
CCDS11 -----SAQKSPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANYDLLSAF
240 250 260 270 280
490 500 510 520 530 540
pF1KB9 DSMTSQAKPEALSSPKFREEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCAQVLRNN
..:::::.:::::.: ..::::::::::::::::::::::::::::::::::: .: :::
CCDS11 EAMTSQANPEALSAPALQEEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCLRVPRNN
290 300 310 320 330 340
550 560 570 580 590 600
pF1KB9 PDALSDVGEVPYWVLEPVLEGWRPDQLYRRKKDNHALVRETDELRRNHCFQDFKEEKPQE
::::.:: ::: ::::::::: :::::: .::: ::.:::::: : ::.::::::::::
CCDS11 PDALGDVEGVPYSVLEPVLEGWTPDQLYRTEKDNAALARETDELWRIHCLQDFKEEKPQE
350 360 370 380 390 400
610 620 630 640 650 660
pF1KB9 NKTWREQYLRLPDAPEQRLRVMTTNIRSARGNNPNGREAKMICFKSVAKTPYDTSRRQEK
...::: :::: :: ::::::.::.::::: :.:.::..:::::.::::::::.::::::
CCDS11 HESWRELYLRLRDAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEK
410 420 430 440 450 460
670 680 690 700 710 720
pF1KB9 SAGDADPENGEIKPASKPAGSSHTPSSQSSSGGGRDSSSSILRWLPEKRANPCLSSSNEH
::: ::: :::..:: ::::::..::. ... :: :... :::.:
CCDS11 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSVSGGG---------------SSNRH
470 480 490 500 510
730 740 750
pF1KB9 AAPAAKTRKQAAKKVAPLMAKAIRDYKRRFSRR
:::: :::::::::::::::::::::: :::::
CCDS11 AAPADKTRKQAAKKVAPLMAKAIRDYKGRFSRR
520 530 540
>>CCDS59316.1 TCEB3CL2 gene_id:100506888|Hs108|chr18 (546 aa)
initn: 3007 init1: 1420 opt: 1420 Z-score: 905.3 bits: 177.7 E(32554): 4.2e-44
Smith-Waterman score: 2604; 60.8% identity (66.8% similar) in 753 aa overlap (1-753:1-546)
10 20 30 40 50 60
pF1KB9 MAAGSTTLHAVEKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
::::::::.:: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAAGSTTLRAVGKLQVRLATKTEPKKLEKYLQKLSALPMTADILAETGIRKTVKRLRKHQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 HVGDFARDLAARWKKLVLVDRNTRPGPQDPEESASRQRFGEALQDQEKAWGFPENATAPR
::::::::::::::::::::::: : ::::::::::::::::::..::::::::::::::
CCDS59 HVGDFARDLAARWKKLVLVDRNTGPDPQDPEESASRQRFGEALQEREKAWGFPENATAPR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 SPSHSPEHRRTARRTPPGQQRPHPRSHSREPRAERKCPRIAPADSGRYRASPTRTAPLRM
:::::::::::::::::::::::::: ::::::::: ::.:::::: .: ::::::: :
CCDS59 SPSHSPEHRRTARRTPPGQQRPHPRSPSREPRAERKRPRMAPADSGPHRDPPTRTAPLPM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PEGPEPAAPGKQPGRGHTHAAQGGPLLCPGCQGQPQGKAVVSHSKGHKSSRQEKRPLCAQ
:::::::.::.::::::.::::::::: ::::::::.:: ::::::::::
CCDS59 PEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSHSKGHKSSR---------
190 200 210 220 230
250 260 270 280 290 300
pF1KB9 GDWHSPTLIREKSCGACLREETPRMPSWASARDRQPSDFKTDKEGGQAGSGQRVPALEEA
::
CCDS59 --------------GA--------------------------------------------
310 320 330 340 350 360
pF1KB9 PDSHQKRPQHSHSNKKRPSLDGRDPGNGTHGLSPEEKEQLSNDRETQEGKPPTAHLDRTS
CCDS59 ------------------------------------------------------------
370 380 390 400 410 420
pF1KB9 VSSLSEVEEVDMAEEFEQPTLSCEKYLTYDQLRKQKKKTGKSATTALGDKQRKANESKGT
CCDS59 ------------------------------------------------------------
430 440 450 460 470 480
pF1KB9 RESWDSAKKLPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDLSEAWMQANYDPLSDS
::.: :::::::::::::: ::::::::::::::::::: :::::::::: ::
CCDS59 -----SAQKSPPVQESQSERLQAAVADSAGPKTVPSHVFSELWDPSEAWMQANYDLLSAF
240 250 260 270 280
490 500 510 520 530 540
pF1KB9 DSMTSQAKPEALSSPKFREEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCAQVLRNN
..:::::.:::::.: ..::::::::::::::::::::::::::::::::::: .: :::
CCDS59 EAMTSQANPEALSAPTLQEEAAFPGRRVNAKMPVYSGSRPACQLQVPTLRQQCLRVPRNN
290 300 310 320 330 340
550 560 570 580 590 600
pF1KB9 PDALSDVGEVPYWVLEPVLEGWRPDQLYRRKKDNHALVRETDELRRNHCFQDFKEEKPQE
::::.:: ::: .:::::::: ::: :: .::: ::.:::::: : ::.::::::::::
CCDS59 PDALGDVEGVPYSALEPVLEGWTPDQPYRTEKDNAALARETDELWRIHCLQDFKEEKPQE
350 360 370 380 390 400
610 620 630 640 650 660
pF1KB9 NKTWREQYLRLPDAPEQRLRVMTTNIRSARGNNPNGREAKMICFKSVAKTPYDTSRRQEK
...::: :::: :: ::::::.::.::::: :.:.::..:::::.::::::::.::::::
CCDS59 HESWRELYLRLRDAREQRLRVVTTKIRSARENKPSGRQTKMICFNSVAKTPYDASRRQEK
410 420 430 440 450 460
670 680 690 700 710 720
pF1KB9 SAGDADPENGEIKPASKPAGSSHTPSSQSSSGGGRDSSSSILRWLPEKRANPCLSSSNEH
::: ::: :::..:: ::::::..::. ... :: :... :::.:
CCDS59 SAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSVSGGG---------------SSNRH
470 480 490 500 510
730 740 750
pF1KB9 AAPAAKTRKQAAKKVAPLMAKAIRDYKRRFSRR
:::: :::::::::::::::::::::: :::::
CCDS59 AAPADKTRKQAAKKVAPLMAKAIRDYKGRFSRR
520 530 540
753 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 09:38:47 2016 done: Sat Nov 5 09:38:48 2016
Total Scan time: 4.200 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]