Restriction map for
pFN21AE6627
(Circular) (Six-base) MAPSORT of: pFN21AE6627.seq Check: 3983 from: 1 to: 5365
pFN21AE6627 5365 bp
With 182 enzymes: SgfI *
March 18, 2015 14:53 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3175 278
Size: 53 83 186 936 1639 2468
Fragments arranged by size:
2468 1639 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2708 1937
Size: 771 4594
Acc65I G'GTAC_C
Cuts at: 2445 2613 2686 2445
Size: 168 73 5124
Fragments arranged by size:
5124 168 73
AclI AA'CG_TT
Cuts at: 1563 3492 3865 1563
Size: 1929 373 3063
Fragments arranged by size:
3063 1929 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3428 4812 5080 1632
Size: 1796 1384 268 1917
Fragments arranged by size:
1917 1796 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5168
AflIII A'CryG_T
Cuts at: 1203 4264 5241 1203
Size: 3061 977 1327
Fragments arranged by size:
3061 1327 977
AgeI A'CCGG_T
Cuts at: 4196 4196
Size: 5365
AhdI GACnn_n'nnGTC
Cuts at: 4094 4094
Size: 5365
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5365
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5365
AlwNI CAG_nnn'CTG
Cuts at: 3108 4680 3108
Size: 1572 3793
ApaLI G'TGCA_C
Cuts at: 2099 3422 4578 2099
Size: 1323 1156 2886
Fragments arranged by size:
2886 1323 1156
ApoI r'AATT_y
Cuts at: 1493 2674 2900 3052 5161 1493
Size: 1181 226 152 2109 1697
Fragments arranged by size:
2109 1697 1181 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3919 160
Size: 872 2887 1606
Fragments arranged by size:
2887 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5365
AvaI C'yCGr_G
Cuts at: 1870 1943 2690 1870
Size: 73 747 4545
Fragments arranged by size:
4545 747 73
BamHI G'GATC_C
Cuts at: 2208 2695 3062 2208
Size: 487 367 4511
Fragments arranged by size:
4511 487 367
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2009 2445 2559 2613 2626
Size: 325 217 627 222 436 114 54 13
Cuts at: 2626 2686 4141 618
Size: 60 1455 1842
Fragments arranged by size:
1842 1455 627 436 325 222 217 114
60 54 13
BanII G_rGCy'C
Cuts at: 1391 2684 1391
Size: 1293 4072
BbeI G_GCGC'C
Cuts at: 2013 2630 2013
Size: 617 4748
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4394
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3556 3590 1903
Size: 34 1619 34 3678
Fragments arranged by size:
3678 1619 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3257 4467 3257
Size: 1210 4155
BclI T'GATC_A
Cuts at: 1548 2136 1548
Size: 588 4777
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3976 136
Size: 107 122 71 631 605 2304 1525
Fragments arranged by size:
2304 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5360 5360
Size: 5365
BlpI GC'TnA_GC
Cuts at: 2782 2782
Size: 5365
Bme1580I G_kGCm'C
Cuts at: 1790 2103 2400 2562 3426 4582 1790
Size: 313 297 162 864 1156 2573
Fragments arranged by size:
2573 1156 864 313 297 162
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5365
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2542 2657 3096
Size: 416 53 83 399 24 1125 115 439
Cuts at: 3096 4054 442
Size: 958 1753
Fragments arranged by size:
1753 1125 958 439 416 399 115 83
53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5365
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 4025 1239
Size: 2786 2579
Bpu10I CC'TnA_GC
Cuts at: 2411 2411
Size: 5365
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3490 4355 4653 3490
Size: 865 298 4202
Fragments arranged by size:
4202 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2308 4028 882
Size: 617 809 1720 2219
Fragments arranged by size:
2219 1720 809 617
BsaAI yAC'GTr
Cuts at: 493 1204 3156 493
Size: 711 1952 2702
Fragments arranged by size:
2702 1952 711
BsaBI GATnn'nnATC
Cuts at: 2372 5359 2372
Size: 2987 2378
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2010 2079 2627 3172
Size: 53 83 186 936 477 69 548 545
Cuts at: 3172 3554 4189 275
Size: 382 635 1451
Fragments arranged by size:
1451 936 635 548 545 477 382 186
83 69 53
BsaWI w'CCGG_w
Cuts at: 3798 4196 4470 4617 5028 3798
Size: 398 274 147 411 4135
Fragments arranged by size:
4135 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2489 2519 1178
Size: 30 165 30 1086 30 4024
Fragments arranged by size:
4024 1086 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2275 2494 1186
Size: 1089 219 4057
Fragments arranged by size:
4057 1089 219
BseYI C'CCAG_C
Cuts at: 4568 5064 4568
Size: 496 4869
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4792
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2076 2815 3576 4604 1540
Size: 275 186 75 739 761 1028 2301
Fragments arranged by size:
2301 1028 761 739 275 186 75
BsiHKAI G_wGCw'C
Cuts at: 2103 2417 3426 3511 4582 2103
Size: 314 1009 85 1071 2886
Fragments arranged by size:
2886 1071 1009 314 85
BsmI GAATG_Cn'
Cuts at: 2876 2969 2876
Size: 93 5272
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2103 2400 2417 2562 2684 3426 3511
Size: 399 313 297 17 145 122 742 85
Cuts at: 3511 4582 1391
Size: 1071 2174
Fragments arranged by size:
2174 1071 742 399 313 297 145 122
85 17
BspEI T'CCGG_A
Cuts at: 5028 5028
Size: 5365
BspHI T'CATG_A
Cuts at: 3254 4984 3254
Size: 1730 3635
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2720 844
Size: 1876 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3252 1394
Size: 429 1429 3507
Fragments arranged by size:
3507 1429 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2128 2337 3860 4034 65
Size: 1183 880 209 1523 174 1396
Fragments arranged by size:
1523 1396 1183 880 209 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4009 4196 1700
Size: 110 2199 187 2869
Fragments arranged by size:
2869 2199 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5365
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5365
BssSI C'ACGA_G
Cuts at: 3425 4437 3425
Size: 1012 4353
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5365
BstBI TT'CG_AA
Cuts at: 4169 4169
Size: 5365
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5365
BstYI r'GATC_y
Cuts at: 1972 2208 2695 3062 3447 3464 4916 5002 5014
Size: 236 487 367 385 17 1452 86 12
Cuts at: 5014 5360 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 487 385 367 346 236 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2013 2617 513
Size: 552 939 9 604 3261
Fragments arranged by size:
3261 939 604 552 9
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4626
Fragments arranged by size:
4626 683 56
BtsI GCAGTG_nn'
Cuts at: 2298 2881 3675 3695 2298
Size: 583 794 20 3968
Fragments arranged by size:
3968 794 583 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5365
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5330
DraI TTT'AAA
Cuts at: 2669 2669
Size: 5365
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4372 809
Size: 507 3056 1802
Fragments arranged by size:
3056 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2073 2812 3701
Size: 54 1425 50 275 18 243 739 889
Cuts at: 3701 5330 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 739 275 243 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2073 2812 1537
Size: 275 261 739 4090
Fragments arranged by size:
4090 739 275 261
EarI CTCTTCn'nnn_
Cuts at: 1353 2423 3295 1353
Size: 1070 872 3423
Fragments arranged by size:
3423 1070 872
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3952 4326 4472 387
Size: 1064 138 2363 374 146 1280
Fragments arranged by size:
2363 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3428 4025 4812 5080 1239
Size: 393 1796 597 787 268 1524
Fragments arranged by size:
1796 1524 787 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2246 2659 2246
Size: 413 4952
EcoRI G'AATT_C
Cuts at: 2674 3052 2674
Size: 378 4987
FspI TGC'GCA
Cuts at: 3871 3871
Size: 5365
HaeII r_GCGC'y
Cuts at: 1678 2013 2039 2630 4512 1678
Size: 335 26 591 1882 2531
Fragments arranged by size:
2531 1882 591 335 26
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4006 4038 4080 4112 1373
Size: 32 135 32 2434 32 42 32 2626
Fragments arranged by size:
2626 2434 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2709 2955 669
Size: 988 281 771 246 3079
Fragments arranged by size:
3079 988 771 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5365
HpaI GTT'AAC
Cuts at: 2955 2955
Size: 5365
KasI G'GCGC_C
Cuts at: 2009 2626 2009
Size: 617 4748
KpnI G_GTAC'C
Cuts at: 2449 2617 2690 2449
Size: 168 73 5124
Fragments arranged by size:
5124 168 73
MfeI C'AATT_G
Cuts at: 2964 2964
Size: 5365
MluI A'CGCG_T
Cuts at: 5241 5241
Size: 5365
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2296 4479 4663 1305
Size: 991 2183 184 2007
Fragments arranged by size:
2183 2007 991 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3543
Fragments arranged by size:
3543 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3323 3682 3841 518
Size: 648 2157 359 159 2042
Fragments arranged by size:
2157 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2015 2088 2619 2781 3458 4606 4851 1606
Size: 409 73 531 162 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 531 409 245 162 73
NarI GG'CG_CC
Cuts at: 2010 2627 2010
Size: 617 4748
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3874
Fragments arranged by size:
3874 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5365
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5365
NotI GC'GGCC_GC
Cuts at: 2812 2812
Size: 5365
NspI r_CATG'y
Cuts at: 1132 1229 2723 4268 1132
Size: 97 1494 1545 2229
Fragments arranged by size:
2229 1545 1494 97
PasI CC'CwG_GG
Cuts at: 1348 2400 1348
Size: 1052 4313
PciI A'CATG_T
Cuts at: 4264 4264
Size: 5365
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5365
PmeI GTTT'AAAC
Cuts at: 2669 2669
Size: 5365
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3434 3466 4947 4979 3434
Size: 32 1481 32 3820
Fragments arranged by size:
3820 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2659 2659
Size: 5365
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5365
PsiI TTA'TAA
Cuts at: 2935 2935
Size: 5365
PsrI GAACnnnnnnTACnnnnnnn_nnnnn'
Cuts at: 2429 2461 2429
Size: 32 5333
PstI C_TGCA'G
Cuts at: 830 2087 2717 830
Size: 1257 630 3478
Fragments arranged by size:
3478 1257 630
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5365
PvuII CAG'CTG
Cuts at: 2088 2088
Size: 5365
SacII CC_GC'GG
Cuts at: 2016 2620 2016
Size: 604 4761
SalI G'TCGA_C
Cuts at: 1936 2707 1936
Size: 771 4594
SapI GCTCTTCn'nnn_
Cuts at: 2423 2423
Size: 5365
SbfI CC_TGCA'GG
Cuts at: 2717 2717
Size: 5365
ScaI AGT'ACT
Cuts at: 3613 5325 3613
Size: 1712 3653
SfcI C'TryA_G
Cuts at: 826 1045 2083 2713 3848 4529 4720 826
Size: 219 1038 630 1135 681 191 1471
Fragments arranged by size:
1471 1135 1038 681 630 219 191
SfoI GGC'GCC
Cuts at: 2011 2628 2011
Size: 617 4748
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5365
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5365
SmaI CCC'GGG
Cuts at: 1872 2692 1872
Size: 820 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3469 4370 4632 820
Size: 197 926 1526 901 262 1553
Fragments arranged by size:
1553 1526 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3156 493
Size: 2663 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5365
SphI G_CATG'C
Cuts at: 1132 2723 1132
Size: 1591 3774
SspI AAT'ATT
Cuts at: 5 52 3289 5
Size: 47 3237 2081
Fragments arranged by size:
3237 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5365
StyI C'CwwG_G
Cuts at: 513 1065 2004 2804 513
Size: 552 939 800 3074
Fragments arranged by size:
3074 939 800 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2435 3392 3409 3562 3747 4192 325
Size: 1255 855 957 17 153 185 445 1498
Fragments arranged by size:
1498 1255 957 855 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3611 5323 96
Size: 274 80 33 51 1443 1634 1712 138
Fragments arranged by size:
1712 1634 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5325 5357 5325
Size: 32 5333
Tth111I GACn'n_nGTC
Cuts at: 1316 2534 1316
Size: 1218 4147
XbaI T'CTAG_A
Cuts at: 2701 2701
Size: 5365
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5365
XmaI C'CCGG_G
Cuts at: 1870 2690 1870
Size: 820 4545
XmnI GAAnn'nnTTC
Cuts at: 3494 3494
Size: 5365
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3173 276
Size: 53 83 186 936 1639 2468
Fragments arranged by size:
2468 1639 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KasI KpnI MfeI MluI MmeI MscI MslI
MspA1I NarI NcoI NdeI NheI NotI NspI PasI
PciI PflMI PmeI PpiI PpuMI PshAI PsiI PsrI
PstI PvuI PvuII SacII SalI SapI SbfI ScaI
SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbvCI
BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII
EcoICRI EcoNI EcoRV FalI FseI FspAI NaeI NgoMIV
NruI NsiI PacI PfoI PmlI PspOMI PspXI RsrII
SacI SanDI SexAI SfiI SrfI SwaI XcmI