Restriction map for
pFN21AE5907
(Circular) (Six-base) MAPSORT of: pFN21AE5907.seq Check: 9759 from: 1 to: 5635
pFN21AE5907 5635 bp
With 182 enzymes: SgfI *
December 8, 2014 13:47 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2172 2172
Size: 5635
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3445 278
Size: 53 83 186 936 1909 2468
Fragments arranged by size:
2468 1909 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2978 1937
Size: 1041 4594
Acc65I G'GTAC_C
Cuts at: 2956 2956
Size: 5635
AclI AA'CG_TT
Cuts at: 1563 3762 4135 1563
Size: 2199 373 3063
Fragments arranged by size:
3063 2199 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3698 5082 5350 1632
Size: 2066 1384 268 1917
Fragments arranged by size:
2066 1917 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5438
AflIII A'CryG_T
Cuts at: 1203 4534 5511 1203
Size: 3331 977 1327
Fragments arranged by size:
3331 1327 977
AgeI A'CCGG_T
Cuts at: 4466 4466
Size: 5635
AhdI GACnn_n'nnGTC
Cuts at: 4364 4364
Size: 5635
AleI CACnn'nnGTG
Cuts at: 1166 2117 1166
Size: 951 4684
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5635
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2261 2293 2261
Size: 32 5603
AlwNI CAG_nnn'CTG
Cuts at: 3378 4950 3378
Size: 1572 4063
ApaLI G'TGCA_C
Cuts at: 3692 4848 3692
Size: 1156 4479
ApoI r'AATT_y
Cuts at: 1493 2944 3170 3322 5431 1493
Size: 1451 226 152 2109 1697
Fragments arranged by size:
2109 1697 1451 226 152
AseI AT'TA_AT
Cuts at: 160 1032 2864 4189 160
Size: 872 1832 1325 1606
Fragments arranged by size:
1832 1606 1325 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5635
AvaI C'yCGr_G
Cuts at: 1870 1943 2804 2960 1870
Size: 73 861 156 4545
Fragments arranged by size:
4545 861 156 73
BamHI G'GATC_C
Cuts at: 2073 2965 3332 2073
Size: 892 367 4376
Fragments arranged by size:
4376 892 367
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2441 2956 4411 618
Size: 325 217 627 654 515 1455 1842
Fragments arranged by size:
1842 1455 654 627 515 325 217
BanII G_rGCy'C
Cuts at: 1391 2562 2954 1391
Size: 1171 392 4072
Fragments arranged by size:
4072 1171 392
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4664
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3826 3860 1903
Size: 34 1889 34 3678
Fragments arranged by size:
3678 1889 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3527 4737 3527
Size: 1210 4425
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5635
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4246 136
Size: 107 122 71 631 605 2574 1525
Fragments arranged by size:
2574 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5630 5630
Size: 5635
BlpI GC'TnA_GC
Cuts at: 3052 3052
Size: 5635
Bme1580I G_kGCm'C
Cuts at: 1790 3696 4852 1790
Size: 1906 1156 2573
Fragments arranged by size:
2573 1906 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5635
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3366 4324 442
Size: 416 53 83 399 24 1949 958 1753
Fragments arranged by size:
1949 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5635
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2653 4295 1239
Size: 1414 1642 2579
Fragments arranged by size:
2579 1642 1414
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2245 2576 2896 3760 4625 4923 2245
Size: 331 320 864 865 298 2957
Fragments arranged by size:
2957 865 864 331 320 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4298 882
Size: 617 2799 2219
Fragments arranged by size:
2799 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2371 3426 493
Size: 711 1167 1055 2702
Fragments arranged by size:
2702 1167 1055 711
BsaBI GATnn'nnATC
Cuts at: 5629 5629
Size: 5635
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3442 3824 4459 275
Size: 53 83 186 936 1909 382 635 1451
Fragments arranged by size:
1909 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 4068 4466 4740 4887 5298 4068
Size: 398 274 147 411 4405
Fragments arranged by size:
4405 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2218 2248 1178
Size: 30 165 30 815 30 4565
Fragments arranged by size:
4565 815 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2920 1186
Size: 1734 3901
BseYI C'CCAG_C
Cuts at: 2462 4838 5334 2462
Size: 2376 496 2763
Fragments arranged by size:
2763 2376 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2150 1163
Size: 573 414 4648
Fragments arranged by size:
4648 573 414
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3085 3846 4874 1540
Size: 275 186 1084 761 1028 2301
Fragments arranged by size:
2301 1084 1028 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2562 3696 3781 4852 2562
Size: 1134 85 1071 3345
Fragments arranged by size:
3345 1134 1071 85
BsmI GAATG_Cn'
Cuts at: 2631 2673 3146 3239 2631
Size: 42 473 93 5027
Fragments arranged by size:
5027 473 93 42
BsmBI CGTCTCn'nnnn_
Cuts at: 2332 2332
Size: 5635
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2562 2954 3696 3781 4852 1391
Size: 399 772 392 742 85 1071 2174
Fragments arranged by size:
2174 1071 772 742 399 392 85
BspEI T'CCGG_A
Cuts at: 5298 5298
Size: 5635
BspHI T'CATG_A
Cuts at: 3524 5254 3524
Size: 1730 3905
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2172 2691 2990 844
Size: 1328 519 299 3489
Fragments arranged by size:
3489 1328 519 299
BsrBI CCG'CTC
Cuts at: 1394 1823 3522 1394
Size: 429 1699 3507
Fragments arranged by size:
3507 1699 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 4130 4304 65
Size: 1183 2882 174 1396
Fragments arranged by size:
2882 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4279 4466 1700
Size: 110 2469 187 2869
Fragments arranged by size:
2869 2469 187 110
BsrGI T'GTAC_A
Cuts at: 96 2394 96
Size: 2298 3337
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5635
BssSI C'ACGA_G
Cuts at: 3695 4707 3695
Size: 1012 4623
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5635
BstBI TT'CG_AA
Cuts at: 4439 4439
Size: 5635
BstEII G'GTnAC_C
Cuts at: 1184 2110 1184
Size: 926 4709
BstYI r'GATC_y
Cuts at: 1972 2073 2965 3332 3717 3734 5186 5272 5284
Size: 101 892 367 385 17 1452 86 12
Cuts at: 5284 5630 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 892 385 367 346 101 86
17 12
Bsu36I CC'TnA_GG
Cuts at: 2903 2903
Size: 5635
BtgI C'CryG_G
Cuts at: 513 1065 2004 2115 2469 513
Size: 552 939 111 354 3679
Fragments arranged by size:
3679 939 552 354 111
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2366 487
Size: 683 56 1140 3756
Fragments arranged by size:
3756 1140 683 56
BtsI GCAGTG_nn'
Cuts at: 3151 3945 3965 3151
Size: 794 20 4821
Fragments arranged by size:
4821 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5635
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5600
DraI TTT'AAA
Cuts at: 2939 2939
Size: 5635
DraIII CAC_nnn'GTG
Cuts at: 2289 2289
Size: 5635
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2519 4642 809
Size: 507 1203 2123 1802
Fragments arranged by size:
2123 1802 1203 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2373 3082 3971
Size: 54 1425 50 275 18 543 709 889
Cuts at: 3971 5600 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 709 543 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 3082 1537
Size: 275 1270 4090
Fragments arranged by size:
4090 1270 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2026 2087 2309 3565 1353
Size: 673 61 222 1256 3423
Fragments arranged by size:
3423 1256 673 222 61
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4222 4596 4742 387
Size: 1064 138 2633 374 146 1280
Fragments arranged by size:
2633 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2560 2560
Size: 5635
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2653 3698 4295 5082 5350 1239
Size: 393 1021 1045 597 787 268 1524
Fragments arranged by size:
1524 1045 1021 787 597 393 268
EcoRI G'AATT_C
Cuts at: 2944 3322 2944
Size: 378 5257
FspI TGC'GCA
Cuts at: 4141 4141
Size: 5635
HaeII r_GCGC'y
Cuts at: 1678 4782 1678
Size: 3104 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2058 2090 4276 4308 4350
Size: 32 135 32 486 32 2186 32 42
Cuts at: 4350 4382 1373
Size: 32 2626
Fragments arranged by size:
2626 2186 486 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2617 2979 3225 669
Size: 988 281 679 362 246 3079
Fragments arranged by size:
3079 988 679 362 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5635
HpaI GTT'AAC
Cuts at: 3225 3225
Size: 5635
KpnI G_GTAC'C
Cuts at: 2960 2960
Size: 5635
MfeI C'AATT_G
Cuts at: 3234 3234
Size: 5635
MluI A'CGCG_T
Cuts at: 5511 5511
Size: 5635
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2602 4749 4933 1305
Size: 1297 2147 184 2007
Fragments arranged by size:
2147 2007 1297 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2375 10
Size: 54 1425 343 543 3270
Fragments arranged by size:
3270 1425 543 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2117 2174 3593 3952 4111 518
Size: 648 951 57 1419 359 159 2042
Fragments arranged by size:
2042 1419 951 648 359 159 57
MspA1I CmG'CkG
Cuts at: 1606 3051 3728 4876 5121 1606
Size: 1445 677 1148 245 2120
Fragments arranged by size:
2120 1445 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 2469 513
Size: 552 939 465 3679
Fragments arranged by size:
3679 939 552 465
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5635
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5635
NotI GC'GGCC_GC
Cuts at: 3082 3082
Size: 5635
NspI r_CATG'y
Cuts at: 1132 1229 2993 4538 1132
Size: 97 1764 1545 2229
Fragments arranged by size:
2229 1764 1545 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5635
PciI A'CATG_T
Cuts at: 4534 4534
Size: 5635
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5635
PmeI GTTT'AAAC
Cuts at: 2939 2939
Size: 5635
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3704 3736 5217 5249 3704
Size: 32 1481 32 4090
Fragments arranged by size:
4090 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5635
PsiI TTA'TAA
Cuts at: 3205 3205
Size: 5635
PspXI vC'TCGA_Gb
Cuts at: 2804 2804
Size: 5635
PsrI GAACnnnnnnTACnnnnnnn_nnnnn'
Cuts at: 2710 2742 2710
Size: 32 5603
PstI C_TGCA'G
Cuts at: 830 2987 830
Size: 2157 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5635
SacI G_AGCT'C
Cuts at: 2562 2562
Size: 5635
SalI G'TCGA_C
Cuts at: 1936 2977 1936
Size: 1041 4594
SapI GCTCTTCn'nnn_
Cuts at: 2309 2309
Size: 5635
SbfI CC_TGCA'GG
Cuts at: 2987 2987
Size: 5635
ScaI AGT'ACT
Cuts at: 2719 3883 5595 2719
Size: 1164 1712 2759
Fragments arranged by size:
2759 1712 1164
SfcI C'TryA_G
Cuts at: 826 1045 2691 2869 2983 4118 4799 4990 826
Size: 219 1646 178 114 1135 681 191 1471
Fragments arranged by size:
1646 1471 1135 681 219 191 178 114
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5635
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5635
SmaI CCC'GGG
Cuts at: 1872 2962 1872
Size: 1090 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2260 2555 2804 2875 3739 4640
Size: 197 926 317 295 249 71 864 901
Cuts at: 4640 4902 820
Size: 262 1553
Fragments arranged by size:
1553 926 901 864 317 295 262 249
197 71
SnaBI TAC'GTA
Cuts at: 493 3426 493
Size: 2933 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5635
SphI G_CATG'C
Cuts at: 1132 2993 1132
Size: 1861 3774
SspI AAT'ATT
Cuts at: 5 52 3559 5
Size: 47 3507 2081
Fragments arranged by size:
3507 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5635
StyI C'CwwG_G
Cuts at: 513 1065 2004 2469 3074 513
Size: 552 939 465 605 3074
Fragments arranged by size:
3074 939 605 552 465
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2429 3662 3679 3832 4017 4462 325
Size: 1255 849 1233 17 153 185 445 1498
Fragments arranged by size:
1498 1255 1233 849 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2178 2394 2717
Size: 274 80 33 51 1443 201 216 323
Cuts at: 2717 3881 5593 96
Size: 1164 1712 138
Fragments arranged by size:
1712 1443 1164 323 274 216 201 138
80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5595 5627 5595
Size: 32 5603
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5635
XbaI T'CTAG_A
Cuts at: 2971 2971
Size: 5635
XhoI C'TCGA_G
Cuts at: 1943 2804 1943
Size: 861 4774
XmaI C'CCGG_G
Cuts at: 1870 2960 1870
Size: 1090 4545
XmnI GAAnn'nnTTC
Cuts at: 3764 3764
Size: 5635
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3443 276
Size: 53 83 186 936 1909 2468
Fragments arranged by size:
2468 1909 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI
AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI
BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI
EagI EarI EciI EcoICRI Eco57MI EcoRI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PmeI PpiI PshAI PsiI PspXI
PsrI PstI PvuI SacI SalI SapI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AfeI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI
BplI Bpu10I BsiWI BstXI BstZ17I EcoNI EcoO109I EcoRV
FalI FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PfoI PmlI PpuMI PspOMI PvuII RsrII
SacII SanDI SexAI SfiI SfoI SrfI SwaI XcmI