Restriction map for
pFN21AE5270
(Circular) (Six-base) MAPSORT of: pFN21AE5270.seq Check: 7976 from: 1 to: 5329
pFN21AE5270 5329 bp
With 182 enzymes: SgfI *
December 8, 2014 13:46 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3139 278
Size: 53 83 186 936 1603 2468
Fragments arranged by size:
2468 1603 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2672 1937
Size: 735 4594
Acc65I G'GTAC_C
Cuts at: 2559 2650 2559
Size: 91 5238
AclI AA'CG_TT
Cuts at: 1563 3456 3829 1563
Size: 1893 373 3063
Fragments arranged by size:
3063 1893 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2051 3392 4776 5044 1632
Size: 419 1341 1384 268 1917
Fragments arranged by size:
1917 1384 1341 419 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5132
AflIII A'CryG_T
Cuts at: 1203 4228 5205 1203
Size: 3025 977 1327
Fragments arranged by size:
3025 1327 977
AgeI A'CCGG_T
Cuts at: 4160 4160
Size: 5329
AhdI GACnn_n'nnGTC
Cuts at: 4058 4058
Size: 5329
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5329
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5329
AlwNI CAG_nnn'CTG
Cuts at: 3072 4644 3072
Size: 1572 3757
ApaLI G'TGCA_C
Cuts at: 3386 4542 3386
Size: 1156 4173
ApoI r'AATT_y
Cuts at: 1493 2638 2864 3016 5125 1493
Size: 1145 226 152 2109 1697
Fragments arranged by size:
2109 1697 1145 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3883 160
Size: 872 2851 1606
Fragments arranged by size:
2851 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5329
AvaI C'yCGr_G
Cuts at: 1870 1943 2410 2654 1870
Size: 73 467 244 4545
Fragments arranged by size:
4545 467 244 73
AvrII C'CTAG_G
Cuts at: 2161 2161
Size: 5329
BamHI G'GATC_C
Cuts at: 2659 3026 2659
Size: 367 4962
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2559 2650 4105 618
Size: 325 217 627 772 91 1455 1842
Fragments arranged by size:
1842 1455 772 627 325 217 91
BanII G_rGCy'C
Cuts at: 1391 2385 2392 2648 1391
Size: 994 7 256 4072
Fragments arranged by size:
4072 994 256 7
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2321 928
Size: 971 422 3936
Fragments arranged by size:
3936 971 422
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2037 2071 3520 3554 1903
Size: 34 100 34 1449 34 3678
Fragments arranged by size:
3678 1449 100 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2149 3221 4431 2149
Size: 1072 1210 3047
Fragments arranged by size:
3047 1210 1072
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5329
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2501 3940 136
Size: 107 122 71 631 605 829 1439 1525
Fragments arranged by size:
1525 1439 829 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2206 5324 2206
Size: 3118 2211
BlpI GC'TnA_GC
Cuts at: 2441 2746 2441
Size: 305 5024
Bme1580I G_kGCm'C
Cuts at: 1790 3390 4546 1790
Size: 1600 1156 2573
Fragments arranged by size:
2573 1600 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5329
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2444 3060 4018
Size: 416 53 83 399 24 1027 616 958
Cuts at: 4018 442
Size: 1753
Fragments arranged by size:
1753 1027 958 616 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 2105 1056
Size: 1049 4280
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2102 3989 1239
Size: 863 1887 2579
Fragments arranged by size:
2579 1887 863
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3454 4319 4617 3454
Size: 865 298 4166
Fragments arranged by size:
4166 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3992 882
Size: 617 2493 2219
Fragments arranged by size:
2493 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3120 493
Size: 711 1916 2702
Fragments arranged by size:
2702 1916 711
BsaBI GATnn'nnATC
Cuts at: 5323 5323
Size: 5329
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3136 3518 4153 275
Size: 53 83 186 936 1603 382 635 1451
Fragments arranged by size:
1603 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2178 3762 4160 4434 4581 4992 2178
Size: 1584 398 274 147 411 2515
Fragments arranged by size:
2515 1584 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2560 2590 1178
Size: 30 165 30 1157 30 3917
Fragments arranged by size:
3917 1157 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2285 2586 1186
Size: 1099 301 3929
Fragments arranged by size:
3929 1099 301
BseYI C'CCAG_C
Cuts at: 4532 5028 4532
Size: 496 4833
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4756
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2173 2779 3540 4568 1540
Size: 275 186 172 606 761 1028 2301
Fragments arranged by size:
2301 1028 761 606 275 186 172
BsiHKAI G_wGCw'C
Cuts at: 2277 2385 3390 3475 4546 2277
Size: 108 1005 85 1071 3060
Fragments arranged by size:
3060 1071 1005 108 85
BsmI GAATG_Cn'
Cuts at: 2369 2840 2933 2369
Size: 471 93 4765
Fragments arranged by size:
4765 471 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2277 2385 2392 2648 3390 3475 4546
Size: 399 487 108 7 256 742 85 1071
Cuts at: 4546 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 487 399 256 108 85
7
BspEI T'CCGG_A
Cuts at: 4992 4992
Size: 5329
BspHI T'CATG_A
Cuts at: 3218 4948 3218
Size: 1730 3599
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2684 844
Size: 1840 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2086 3216 1394
Size: 429 263 1130 3507
Fragments arranged by size:
3507 1130 429 263
BsrDI GCAATG_nn'
Cuts at: 65 1248 3824 3998 65
Size: 1183 2576 174 1396
Fragments arranged by size:
2576 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3973 4160 1700
Size: 110 2163 187 2869
Fragments arranged by size:
2869 2163 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5329
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5329
BssSI C'ACGA_G
Cuts at: 3389 4401 3389
Size: 1012 4317
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5329
BstBI TT'CG_AA
Cuts at: 4133 4133
Size: 5329
BstEII G'GTnAC_C
Cuts at: 1184 2414 1184
Size: 1230 4099
BstYI r'GATC_y
Cuts at: 1972 2206 2659 3026 3411 3428 4880 4966 4978
Size: 234 453 367 385 17 1452 86 12
Cuts at: 4978 5324 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 453 385 367 346 234 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2142 2356 2419 2496 513
Size: 552 1077 214 63 77 3346
Fragments arranged by size:
3346 1077 552 214 77 63
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4590
Fragments arranged by size:
4590 683 56
BtsI GCAGTG_nn'
Cuts at: 2845 3639 3659 2845
Size: 794 20 4515
Fragments arranged by size:
4515 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5329
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5294
DraI TTT'AAA
Cuts at: 2633 2633
Size: 5329
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2183 4336 809
Size: 507 867 2153 1802
Fragments arranged by size:
2153 1802 867 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2170 2253 2493
Size: 54 1425 50 275 18 340 83 240
Cuts at: 2493 2776 3665 5294 8
Size: 283 889 1629 43
Fragments arranged by size:
1629 1425 889 340 283 275 240 83
54 50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2170 2776 1537
Size: 275 358 606 4090
Fragments arranged by size:
4090 606 358 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2309 2589 3259 1353
Size: 956 280 670 3423
Fragments arranged by size:
3423 956 670 280
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3916 4290 4436 387
Size: 1064 138 2327 374 146 1280
Fragments arranged by size:
2327 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2383 2383
Size: 5329
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2051 2102 3392 3989 4776 5044 1239
Size: 393 419 51 1290 597 787 268 1524
Fragments arranged by size:
1524 1290 787 597 419 393 268 51
EcoO109I rG'GnC_Cy
Cuts at: 2320 2320
Size: 5329
EcoRI G'AATT_C
Cuts at: 2638 3016 2638
Size: 378 4951
FspI TGC'GCA
Cuts at: 3835 3835
Size: 5329
HaeII r_GCGC'y
Cuts at: 1678 4476 1678
Size: 2798 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3970 4002 4044 4076 1373
Size: 32 135 32 2398 32 42 32 2626
Fragments arranged by size:
2626 2398 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2673 2919 669
Size: 988 281 735 246 3079
Fragments arranged by size:
3079 988 735 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5329
HpaI GTT'AAC
Cuts at: 2919 2919
Size: 5329
KpnI G_GTAC'C
Cuts at: 2563 2654 2563
Size: 91 5238
MfeI C'AATT_G
Cuts at: 2928 2928
Size: 5329
MluI A'CGCG_T
Cuts at: 5205 5205
Size: 5329
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4443 4627 1305
Size: 3138 184 2007
Fragments arranged by size:
3138 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2255 10
Size: 54 1425 343 423 3084
Fragments arranged by size:
3084 1425 423 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3287 3646 3805 518
Size: 648 2121 359 159 2042
Fragments arranged by size:
2121 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2152 2745 3422 4570 4815 1606
Size: 546 593 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 593 546 245
NcoI C'CATG_G
Cuts at: 513 1065 2356 2419 513
Size: 552 1291 63 3423
Fragments arranged by size:
3423 1291 552 63
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5329
NheI G'CTAG_C
Cuts at: 1052 2101 1052
Size: 1049 4280
NotI GC'GGCC_GC
Cuts at: 2776 2776
Size: 5329
NspI r_CATG'y
Cuts at: 1132 1229 2687 4232 1132
Size: 97 1458 1545 2229
Fragments arranged by size:
2229 1545 1458 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5329
PciI A'CATG_T
Cuts at: 4228 4228
Size: 5329
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5329
PmeI GTTT'AAAC
Cuts at: 2633 2633
Size: 5329
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3398 3430 4911 4943 3398
Size: 32 1481 32 3784
Fragments arranged by size:
3784 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2320 2320
Size: 5329
PshAI GACnn'nnGTC
Cuts at: 1613 2325 1613
Size: 712 4617
PsiI TTA'TAA
Cuts at: 2899 2899
Size: 5329
PstI C_TGCA'G
Cuts at: 830 2050 2681 830
Size: 1220 631 3478
Fragments arranged by size:
3478 1220 631
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5329
PvuII CAG'CTG
Cuts at: 2152 2152
Size: 5329
SacI G_AGCT'C
Cuts at: 2385 2385
Size: 5329
SalI G'TCGA_C
Cuts at: 1936 2671 1936
Size: 735 4594
SanDI GG'GwC_CC
Cuts at: 2320 2320
Size: 5329
SbfI CC_TGCA'GG
Cuts at: 2681 2681
Size: 5329
ScaI AGT'ACT
Cuts at: 3577 5289 3577
Size: 1712 3617
SfcI C'TryA_G
Cuts at: 826 1045 2046 2677 3812 4493 4684 826
Size: 219 1001 631 1135 681 191 1471
Fragments arranged by size:
1471 1135 1001 681 631 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5329
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5329
SmaI CCC'GGG
Cuts at: 1872 2412 2656 1872
Size: 540 244 4545
Fragments arranged by size:
4545 540 244
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3433 4334 4596 820
Size: 197 926 1490 901 262 1553
Fragments arranged by size:
1553 1490 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3120 493
Size: 2627 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5329
SphI G_CATG'C
Cuts at: 1132 2687 1132
Size: 1555 3774
SspI AAT'ATT
Cuts at: 5 52 3253 5
Size: 47 3201 2081
Fragments arranged by size:
3201 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5329
StyI C'CwwG_G
Cuts at: 513 1065 2161 2356 2419 2768 513
Size: 552 1096 195 63 349 3074
Fragments arranged by size:
3074 1096 552 349 195 63
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3356 3373 3526 3711 4156 325
Size: 1255 1776 17 153 185 445 1498
Fragments arranged by size:
1776 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3575 5287 96
Size: 274 80 33 51 1443 1598 1712 138
Fragments arranged by size:
1712 1598 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2173 2205 5289 5321 2173
Size: 32 3084 32 2181
Fragments arranged by size:
3084 2181 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5329
XbaI T'CTAG_A
Cuts at: 2665 2665
Size: 5329
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2494 2494
Size: 5329
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5329
XmaI C'CCGG_G
Cuts at: 1870 2410 2654 1870
Size: 540 244 4545
Fragments arranged by size:
4545 540 244
XmnI GAAnn'nnTTC
Cuts at: 3458 3458
Size: 5329
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3137 276
Size: 53 83 186 936 1603 2468
Fragments arranged by size:
2468 1603 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI
Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NspI PasI PciI PflMI
PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII
SacI SalI SanDI SbfI ScaI SfcI SgfI SgrAI
SmaI SmlI SnaBI SpeI SphI SspI StuI StyI
TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI
XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
DraIII EcoNI EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI
PspXI PsrI RsrII SacII SapI SexAI SfiI SfoI
SrfI SwaI