Restriction map for
pFN21AE4014
(Circular) (Six-base) MAPSORT of: pFN21AE4014.seq Check: 5041 from: 1 to: 5281
pFN21AE4014 5281 bp
With 182 enzymes: SgfI *
March 28, 2012 13:01 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3091 278
Size: 53 83 186 936 1555 2468
Fragments arranged by size:
2468 1555 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2084 2624 1937
Size: 147 540 4594
Fragments arranged by size:
4594 540 147
Acc65I G'GTAC_C
Cuts at: 2602 2602
Size: 5281
AclI AA'CG_TT
Cuts at: 1563 2580 3408 3781 1563
Size: 1017 828 373 3063
Fragments arranged by size:
3063 1017 828 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3344 4728 4996 1632
Size: 1712 1384 268 1917
Fragments arranged by size:
1917 1712 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5084
AflIII A'CryG_T
Cuts at: 1203 4180 5157 1203
Size: 2977 977 1327
Fragments arranged by size:
2977 1327 977
AgeI A'CCGG_T
Cuts at: 4112 4112
Size: 5281
AhdI GACnn_n'nnGTC
Cuts at: 4010 4010
Size: 5281
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5281
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5281
AlwNI CAG_nnn'CTG
Cuts at: 2293 3024 4596 2293
Size: 731 1572 2978
Fragments arranged by size:
2978 1572 731
ApaLI G'TGCA_C
Cuts at: 3338 4494 3338
Size: 1156 4125
ApoI r'AATT_y
Cuts at: 1493 2590 2816 2968 5077 1493
Size: 1097 226 152 2109 1697
Fragments arranged by size:
2109 1697 1097 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3835 160
Size: 872 2803 1606
Fragments arranged by size:
2803 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5281
AvaI C'yCGr_G
Cuts at: 1870 1943 2606 1870
Size: 73 663 4545
Fragments arranged by size:
4545 663 73
BamHI G'GATC_C
Cuts at: 2611 2978 2611
Size: 367 4914
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2602 4057 618
Size: 325 217 627 815 1455 1842
Fragments arranged by size:
1842 1455 815 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2395 2600 1391
Size: 1004 205 4072
Fragments arranged by size:
4072 1004 205
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4310
BbvCI CC'TCA_GC
Cuts at: 2403 2403
Size: 5281
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3472 3506 1903
Size: 34 1535 34 3678
Fragments arranged by size:
3678 1535 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3173 4383 3173
Size: 1210 4071
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5281
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3892 136
Size: 107 122 71 631 605 2220 1525
Fragments arranged by size:
2220 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5276 5276
Size: 5281
BlpI GC'TnA_GC
Cuts at: 2698 2698
Size: 5281
Bme1580I G_kGCm'C
Cuts at: 1790 2479 3342 4498 1790
Size: 689 863 1156 2573
Fragments arranged by size:
2573 1156 863 689
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5281
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3012 3970 442
Size: 416 53 83 399 24 1595 958 1753
Fragments arranged by size:
1753 1595 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5281
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2409 3941 1239
Size: 1170 1532 2579
Fragments arranged by size:
2579 1532 1170
Bpu10I CC'TnA_GC
Cuts at: 2112 2403 2112
Size: 291 4990
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3406 4271 4569 3406
Size: 865 298 4118
Fragments arranged by size:
4118 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3944 882
Size: 617 2445 2219
Fragments arranged by size:
2445 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3072 493
Size: 711 1868 2702
Fragments arranged by size:
2702 1868 711
BsaBI GATnn'nnATC
Cuts at: 5275 5275
Size: 5281
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3088 3470 4105 275
Size: 53 83 186 936 1555 382 635 1451
Fragments arranged by size:
1555 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2448 3714 4112 4386 4533 4944 2448
Size: 1266 398 274 147 411 2785
Fragments arranged by size:
2785 1266 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5056
Fragments arranged by size:
5056 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2565 1186
Size: 1379 3902
BseYI C'CCAG_C
Cuts at: 2014 2075 4484 4980 2014
Size: 61 2409 496 2315
Fragments arranged by size:
2409 2315 496 61
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4708
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2731 3492 4520 1540
Size: 275 186 730 761 1028 2301
Fragments arranged by size:
2301 1028 761 730 275 186
BsiHKAI G_wGCw'C
Cuts at: 2322 2395 3342 3427 4498 2322
Size: 73 947 85 1071 3105
Fragments arranged by size:
3105 1071 947 85 73
BsmI GAATG_Cn'
Cuts at: 2792 2885 2792
Size: 93 5188
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2322 2395 2479 2600 3342 3427 4498
Size: 399 532 73 84 121 742 85 1071
Cuts at: 4498 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 532 399 121 85 84
73
BspEI T'CCGG_A
Cuts at: 4944 4944
Size: 5281
BspHI T'CATG_A
Cuts at: 3170 4900 3170
Size: 1730 3551
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2636 844
Size: 1792 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3168 1394
Size: 429 1345 3507
Fragments arranged by size:
3507 1345 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3776 3950 65
Size: 1183 2528 174 1396
Fragments arranged by size:
2528 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3925 4112 1700
Size: 110 2115 187 2869
Fragments arranged by size:
2869 2115 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5281
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5281
BssSI C'ACGA_G
Cuts at: 3341 4353 3341
Size: 1012 4269
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5281
BstBI TT'CG_AA
Cuts at: 4085 4085
Size: 5281
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5281
BstYI r'GATC_y
Cuts at: 1972 2611 2978 3363 3380 4832 4918 4930 5276
Size: 639 367 385 17 1452 86 12 346
Cuts at: 5276 1972
Size: 1977
Fragments arranged by size:
1977 1452 639 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3790
Fragments arranged by size:
3790 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4542
Fragments arranged by size:
4542 683 56
BtsI GCAGTG_nn'
Cuts at: 2449 2797 3591 3611 2449
Size: 348 794 20 4119
Fragments arranged by size:
4119 794 348 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5281
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5246
DraI TTT'AAA
Cuts at: 2585 2585
Size: 5281
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4288 809
Size: 507 2972 1802
Fragments arranged by size:
2972 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2728 3617 5246
Size: 54 1425 50 275 18 898 889 1629
Cuts at: 5246 8
Size: 43
Fragments arranged by size:
1629 1425 898 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2728 1537
Size: 275 916 4090
Fragments arranged by size:
4090 916 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2292 2525 3211 1353
Size: 939 233 686 3423
Fragments arranged by size:
3423 939 686 233
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3868 4242 4388 387
Size: 1064 138 2279 374 146 1280
Fragments arranged by size:
2279 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2393 2393
Size: 5281
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2409 3344 3941 4728 4996 1239
Size: 393 777 935 597 787 268 1524
Fragments arranged by size:
1524 935 787 777 597 393 268
EcoNI CCTnn'n_nnAGG
Cuts at: 2136 2136
Size: 5281
EcoRI G'AATT_C
Cuts at: 2590 2968 2590
Size: 378 4903
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2072 2072
Size: 5281
FspI TGC'GCA
Cuts at: 3787 3787
Size: 5281
HaeII r_GCGC'y
Cuts at: 1678 4428 1678
Size: 2750 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3922 3954 3996 4028 1373
Size: 32 135 32 2350 32 42 32 2626
Fragments arranged by size:
2626 2350 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2625 2871 669
Size: 988 281 687 246 3079
Fragments arranged by size:
3079 988 687 281 246
HindIII A'AGCT_T
Cuts at: 748 2105 2435 748
Size: 1357 330 3594
Fragments arranged by size:
3594 1357 330
HpaI GTT'AAC
Cuts at: 2871 2871
Size: 5281
KpnI G_GTAC'C
Cuts at: 2606 2606
Size: 5281
MfeI C'AATT_G
Cuts at: 2880 2880
Size: 5281
MluI A'CGCG_T
Cuts at: 5157 5157
Size: 5281
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2145 2179 4395 4579 1305
Size: 840 34 2216 184 2007
Fragments arranged by size:
2216 2007 840 184 34
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3459
Fragments arranged by size:
3459 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2417 3239 3598 3757 518
Size: 648 1251 822 359 159 2042
Fragments arranged by size:
2042 1251 822 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2075 2697 3374 4522 4767 1606
Size: 469 622 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 622 469 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3790
Fragments arranged by size:
3790 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5281
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5281
NotI GC'GGCC_GC
Cuts at: 2728 2728
Size: 5281
NspI r_CATG'y
Cuts at: 1132 1229 2386 2639 4184 1132
Size: 97 1157 253 1545 2229
Fragments arranged by size:
2229 1545 1157 253 97
PasI CC'CwG_GG
Cuts at: 1348 2500 1348
Size: 1152 4129
PciI A'CATG_T
Cuts at: 4180 4180
Size: 5281
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5281
PmeI GTTT'AAAC
Cuts at: 2585 2585
Size: 5281
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3350 3382 4863 4895 3350
Size: 32 1481 32 3736
Fragments arranged by size:
3736 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5281
PsiI TTA'TAA
Cuts at: 2097 2851 2097
Size: 754 4527
PstI C_TGCA'G
Cuts at: 830 2633 830
Size: 1803 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5281
PvuII CAG'CTG
Cuts at: 2075 2075
Size: 5281
SacI G_AGCT'C
Cuts at: 2395 2395
Size: 5281
SalI G'TCGA_C
Cuts at: 1936 2623 1936
Size: 687 4594
SapI GCTCTTCn'nnn_
Cuts at: 2525 2525
Size: 5281
SbfI CC_TGCA'GG
Cuts at: 2633 2633
Size: 5281
ScaI AGT'ACT
Cuts at: 3529 5241 3529
Size: 1712 3569
SfcI C'TryA_G
Cuts at: 826 1045 2629 3764 4445 4636 826
Size: 219 1584 1135 681 191 1471
Fragments arranged by size:
1584 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5281
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5281
SmaI CCC'GGG
Cuts at: 1872 2608 1872
Size: 736 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3385 4286 4548 820
Size: 197 926 1442 901 262 1553
Fragments arranged by size:
1553 1442 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3072 493
Size: 2579 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5281
SphI G_CATG'C
Cuts at: 1132 2639 1132
Size: 1507 3774
SspI AAT'ATT
Cuts at: 5 52 3205 5
Size: 47 3153 2081
Fragments arranged by size:
3153 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5281
StyI C'CwwG_G
Cuts at: 513 1065 2004 2720 513
Size: 552 939 716 3074
Fragments arranged by size:
3074 939 716 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3308 3325 3478 3663 4108 325
Size: 1255 1728 17 153 185 445 1498
Fragments arranged by size:
1728 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2276 3527 5239
Size: 274 80 33 51 1443 299 1251 1712
Cuts at: 5239 96
Size: 138
Fragments arranged by size:
1712 1443 1251 299 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5241 5273 5241
Size: 32 5249
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5281
XbaI T'CTAG_A
Cuts at: 2617 2617
Size: 5281
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2011 2011
Size: 5281
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5281
XmaI C'CCGG_G
Cuts at: 1870 2606 1870
Size: 736 4545
XmnI GAAnn'nnTTC
Cuts at: 3410 3410
Size: 5281
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3089 276
Size: 53 83 186 936 1555 2468
Fragments arranged by size:
2468 1555 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
EcoICRI Eco57MI EcoNI EcoRI FalI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI
PvuII SacI SalI SapI SbfI ScaI SfcI SgfI
SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI
StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII
EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI
PsrI RsrII SacII SanDI SexAI SfiI SfoI SrfI
SwaI