Restriction map for
pFN21AE3938
(Circular) (Six-base) MAPSORT of: pFN21AE3938.seq Check: 7976 from: 1 to: 5278
pFN21AE3938 5278 bp
With 182 enzymes: SgfI *
March 28, 2012 13:37 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2161 2161
Size: 5278
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3088 278
Size: 53 83 186 936 1552 2468
Fragments arranged by size:
2468 1552 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2394 2490 2621 1937
Size: 457 96 131 4594
Fragments arranged by size:
4594 457 131 96
Acc65I G'GTAC_C
Cuts at: 2599 2599
Size: 5278
AclI AA'CG_TT
Cuts at: 1563 3405 3778 1563
Size: 1842 373 3063
Fragments arranged by size:
3063 1842 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3341 4725 4993 1632
Size: 1709 1384 268 1917
Fragments arranged by size:
1917 1709 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5081
AflIII A'CryG_T
Cuts at: 1203 4177 5154 1203
Size: 2974 977 1327
Fragments arranged by size:
2974 1327 977
AgeI A'CCGG_T
Cuts at: 4109 4109
Size: 5278
AhdI GACnn_n'nnGTC
Cuts at: 4007 4007
Size: 5278
AleI CACnn'nnGTG
Cuts at: 1166 2348 1166
Size: 1182 4096
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5278
AlwNI CAG_nnn'CTG
Cuts at: 2077 3021 4593 2077
Size: 944 1572 2762
Fragments arranged by size:
2762 1572 944
ApaLI G'TGCA_C
Cuts at: 3335 4491 3335
Size: 1156 4122
ApoI r'AATT_y
Cuts at: 1493 2587 2813 2965 5074 1493
Size: 1094 226 152 2109 1697
Fragments arranged by size:
2109 1697 1094 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3832 160
Size: 872 2800 1606
Fragments arranged by size:
2800 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5278
AvaI C'yCGr_G
Cuts at: 1870 1943 2190 2603 1870
Size: 73 247 413 4545
Fragments arranged by size:
4545 413 247 73
BamHI G'GATC_C
Cuts at: 2608 2975 2608
Size: 367 4911
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2599 4054 618
Size: 325 217 627 812 1455 1842
Fragments arranged by size:
1842 1455 812 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2141 2199 2484 2597 1391
Size: 750 58 285 113 4072
Fragments arranged by size:
4072 750 285 113 58
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4307
BbvCI CC'TCA_GC
Cuts at: 2540 2540
Size: 5278
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2008 2042 3469 3503 1903
Size: 34 71 34 1427 34 3678
Fragments arranged by size:
3678 1427 71 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3170 4380 3170
Size: 1210 4068
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5278
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3889 136
Size: 107 122 71 631 605 2217 1525
Fragments arranged by size:
2217 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5273 5273
Size: 5278
BlpI GC'TnA_GC
Cuts at: 2409 2695 2409
Size: 286 4992
Bme1580I G_kGCm'C
Cuts at: 1790 3339 4495 1790
Size: 1549 1156 2573
Fragments arranged by size:
2573 1549 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5278
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2425 3009 3967
Size: 416 53 83 399 24 1008 584 958
Cuts at: 3967 442
Size: 1753
Fragments arranged by size:
1753 1008 958 584 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5278
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2087 2498 3938 1239
Size: 848 411 1440 2579
Fragments arranged by size:
2579 1440 848 411
Bpu10I CC'TnA_GC
Cuts at: 2540 2540
Size: 5278
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2288 3403 4268 4566 2288
Size: 1115 865 298 3000
Fragments arranged by size:
3000 1115 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3941 882
Size: 617 2442 2219
Fragments arranged by size:
2442 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2134 3069 493
Size: 711 930 935 2702
Fragments arranged by size:
2702 935 930 711
BsaBI GATnn'nnATC
Cuts at: 5272 5272
Size: 5278
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2042 3085 3467 4102
Size: 53 83 186 936 509 1043 382 635
Cuts at: 4102 275
Size: 1451
Fragments arranged by size:
1451 1043 936 635 509 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3711 4109 4383 4530 4941 3711
Size: 398 274 147 411 4048
Fragments arranged by size:
4048 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2123 2153 2453 2483 1178
Size: 30 165 30 720 30 300 30 3973
Fragments arranged by size:
3973 720 300 165 30 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5278
BseYI C'CCAG_C
Cuts at: 4481 4977 4481
Size: 496 4782
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4705
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2728 3489 4517 1540
Size: 275 186 727 761 1028 2301
Fragments arranged by size:
2301 1028 761 727 275 186
BsiHKAI G_wGCw'C
Cuts at: 3339 3424 4495 3339
Size: 85 1071 4122
Fragments arranged by size:
4122 1071 85
BsmI GAATG_Cn'
Cuts at: 2789 2882 2789
Size: 93 5185
BsmBI CGTCTCn'nnnn_
Cuts at: 2108 2108
Size: 5278
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2141 2199 2484 2597 3339 3424 4495
Size: 399 351 58 285 113 742 85 1071
Cuts at: 4495 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 399 351 285 113 85
58
BspEI T'CCGG_A
Cuts at: 4941 4941
Size: 5278
BspHI T'CATG_A
Cuts at: 3167 4897 3167
Size: 1730 3548
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2161 2633 844
Size: 1317 472 3489
Fragments arranged by size:
3489 1317 472
BsrBI CCG'CTC
Cuts at: 1394 1823 3165 1394
Size: 429 1342 3507
Fragments arranged by size:
3507 1342 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3773 3947 65
Size: 1183 2525 174 1396
Fragments arranged by size:
2525 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2463 3922 4109 1700
Size: 110 653 1459 187 2869
Fragments arranged by size:
2869 1459 653 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5278
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5278
BssSI C'ACGA_G
Cuts at: 3338 4350 3338
Size: 1012 4266
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5278
BstBI TT'CG_AA
Cuts at: 4082 4082
Size: 5278
BstEII G'GTnAC_C
Cuts at: 1184 2341 1184
Size: 1157 4121
BstYI r'GATC_y
Cuts at: 1972 2608 2975 3360 3377 4829 4915 4927 5273
Size: 636 367 385 17 1452 86 12 346
Cuts at: 5273 1972
Size: 1977
Fragments arranged by size:
1977 1452 636 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3787
Fragments arranged by size:
3787 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4539
Fragments arranged by size:
4539 683 56
BtsI GCAGTG_nn'
Cuts at: 2224 2794 3588 3608 2224
Size: 570 794 20 3894
Fragments arranged by size:
3894 794 570 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5278
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5243
DraI TTT'AAA
Cuts at: 2582 2582
Size: 5278
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4285 809
Size: 507 2969 1802
Fragments arranged by size:
2969 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2035 2496 2725
Size: 54 1425 50 275 18 205 461 229
Cuts at: 2725 3614 5243 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 461 275 229 205 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2725 1537
Size: 275 913 4090
Fragments arranged by size:
4090 913 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2006 3208 1353
Size: 653 1202 3423
Fragments arranged by size:
3423 1202 653
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2474 3865 4239 4385 387
Size: 1064 138 885 1391 374 146 1280
Fragments arranged by size:
1391 1280 1064 885 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2087 2498 3341 3938 4725 4993 1239
Size: 393 455 411 843 597 787 268 1524
Fragments arranged by size:
1524 843 787 597 455 411 393 268
EcoRI G'AATT_C
Cuts at: 2587 2965 2587
Size: 378 4900
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2389 2548 2389
Size: 159 5119
FspI TGC'GCA
Cuts at: 3784 3784
Size: 5278
HaeII r_GCGC'y
Cuts at: 1678 2470 4425 1678
Size: 792 1955 2531
Fragments arranged by size:
2531 1955 792
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2453 2485 3919 3951 3993
Size: 32 135 32 881 32 1434 32 42
Cuts at: 3993 4025 1373
Size: 32 2626
Fragments arranged by size:
2626 1434 881 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2622 2868 669
Size: 988 281 684 246 3079
Fragments arranged by size:
3079 988 684 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5278
HpaI GTT'AAC
Cuts at: 2868 2868
Size: 5278
KpnI G_GTAC'C
Cuts at: 2603 2603
Size: 5278
MfeI C'AATT_G
Cuts at: 2877 2877
Size: 5278
MluI A'CGCG_T
Cuts at: 5154 5154
Size: 5278
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4392 4576 1305
Size: 3087 184 2007
Fragments arranged by size:
3087 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2037 2498 10
Size: 54 1425 343 205 461 2790
Fragments arranged by size:
2790 1425 461 343 205 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2132 2348 3236 3595 3754 518
Size: 648 966 216 888 359 159 2042
Fragments arranged by size:
2042 966 888 648 359 216 159
MspA1I CmG'CkG
Cuts at: 1606 2386 2562 2694 3371 4519 4764 1606
Size: 780 176 132 677 1148 245 2120
Fragments arranged by size:
2120 1148 780 677 245 176 132
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3787
Fragments arranged by size:
3787 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5278
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5278
NotI GC'GGCC_GC
Cuts at: 2725 2725
Size: 5278
NspI r_CATG'y
Cuts at: 1132 1229 2636 4181 1132
Size: 97 1407 1545 2229
Fragments arranged by size:
2229 1545 1407 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5278
PciI A'CATG_T
Cuts at: 4177 4177
Size: 5278
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2095 1108
Size: 987 4291
PfoI T'CCnGG_A
Cuts at: 2064 2475 2064
Size: 411 4867
PmeI GTTT'AAAC
Cuts at: 2582 2582
Size: 5278
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3347 3379 4860 4892 3347
Size: 32 1481 32 3733
Fragments arranged by size:
3733 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5278
PsiI TTA'TAA
Cuts at: 2848 2848
Size: 5278
PstI C_TGCA'G
Cuts at: 830 2630 830
Size: 1800 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5278
RsrII CG'GwC_CG
Cuts at: 2461 2461
Size: 5278
SalI G'TCGA_C
Cuts at: 1936 2620 1936
Size: 684 4594
SapI GCTCTTCn'nnn_
Cuts at: 2006 2006
Size: 5278
SbfI CC_TGCA'GG
Cuts at: 2630 2630
Size: 5278
ScaI AGT'ACT
Cuts at: 3526 5238 3526
Size: 1712 3566
SfcI C'TryA_G
Cuts at: 826 1045 2260 2626 3761 4442 4633 826
Size: 219 1215 366 1135 681 191 1471
Fragments arranged by size:
1471 1215 1135 681 366 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5278
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5278
SmaI CCC'GGG
Cuts at: 1872 2192 2605 1872
Size: 320 413 4545
Fragments arranged by size:
4545 413 320
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2303 3382 4283 4545 820
Size: 197 926 360 1079 901 262 1553
Fragments arranged by size:
1553 1079 926 901 360 262 197
SnaBI TAC'GTA
Cuts at: 493 3069 493
Size: 2576 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5278
SphI G_CATG'C
Cuts at: 1132 2636 1132
Size: 1504 3774
SspI AAT'ATT
Cuts at: 5 52 3202 5
Size: 47 3150 2081
Fragments arranged by size:
3150 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5278
StyI C'CwwG_G
Cuts at: 513 1065 2004 2325 2356 2568 2717 513
Size: 552 939 321 31 212 149 3074
Fragments arranged by size:
3074 939 552 321 212 149 31
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3305 3322 3475 3660 4105 325
Size: 1255 1725 17 153 185 445 1498
Fragments arranged by size:
1725 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3524 5236 96
Size: 274 80 33 51 1443 1547 1712 138
Fragments arranged by size:
1712 1547 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5238 5270 5238
Size: 32 5246
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5278
XbaI T'CTAG_A
Cuts at: 2614 2614
Size: 5278
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5278
XmaI C'CCGG_G
Cuts at: 1870 2190 2603 1870
Size: 320 413 4545
Fragments arranged by size:
4545 413 320
XmnI GAAnn'nnTTC
Cuts at: 3407 3407
Size: 5278
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3086 276
Size: 53 83 186 936 1552 2468
Fragments arranged by size:
2468 1552 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI
BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI
BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI
EarI EciI Eco57MI EcoRI FalI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI
PvuI RsrII SalI SapI SbfI ScaI SfcI SgfI
SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI
StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI
XmnI ZraI
Enzymes that do not cut:
AfeI AloI ApaI AscI AvrII BaeI BbeI BfrBI
BplI BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI
EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PmlI PpuMI PspOMI PspXI PsrI
PvuII SacI SacII SanDI SexAI SfiI SfoI SrfI
SwaI XcmI