Restriction map for
pFN21AE3402
(Circular) (Six-base) MAPSORT of: pFN21AE3402.seq Check: 8847 from: 1 to: 5152
pFN21AE3402 5152 bp
With 182 enzymes: SgfI *
March 28, 2012 12:43 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2962 278
Size: 53 83 186 936 1426 2468
Fragments arranged by size:
2468 1426 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2495 1937
Size: 558 4594
Acc65I G'GTAC_C
Cuts at: 2473 2473
Size: 5152
AclI AA'CG_TT
Cuts at: 1563 3279 3652 1563
Size: 1716 373 3063
Fragments arranged by size:
3063 1716 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2194 3215 4599 4867 1632
Size: 562 1021 1384 268 1917
Fragments arranged by size:
1917 1384 1021 562 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4955
AflIII A'CryG_T
Cuts at: 1203 4051 5028 1203
Size: 2848 977 1327
Fragments arranged by size:
2848 1327 977
AgeI A'CCGG_T
Cuts at: 3983 3983
Size: 5152
AhdI GACnn_n'nnGTC
Cuts at: 3881 3881
Size: 5152
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5152
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5152
AlwNI CAG_nnn'CTG
Cuts at: 2895 4467 2895
Size: 1572 3580
ApaLI G'TGCA_C
Cuts at: 3209 4365 3209
Size: 1156 3996
ApoI r'AATT_y
Cuts at: 1493 2461 2687 2839 4948 1493
Size: 968 226 152 2109 1697
Fragments arranged by size:
2109 1697 968 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3706 160
Size: 872 2674 1606
Fragments arranged by size:
2674 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5152
AvaI C'yCGr_G
Cuts at: 1870 1943 2042 2477 1870
Size: 73 99 435 4545
Fragments arranged by size:
4545 435 99 73
AvrII C'CTAG_G
Cuts at: 2368 2368
Size: 5152
BamHI G'GATC_C
Cuts at: 2482 2849 2482
Size: 367 4785
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2473 3928 618
Size: 325 217 627 686 1455 1842
Fragments arranged by size:
1842 1455 686 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2471 1391
Size: 1080 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4181
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 1987 2021 3343 3377 1903
Size: 34 50 34 1322 34 3678
Fragments arranged by size:
3678 1322 50 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3044 4254 3044
Size: 1210 3942
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5152
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3763 136
Size: 107 122 71 631 605 2091 1525
Fragments arranged by size:
2091 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5147 5147
Size: 5152
BlpI GC'TnA_GC
Cuts at: 2569 2569
Size: 5152
Bme1580I G_kGCm'C
Cuts at: 1790 3213 4369 1790
Size: 1423 1156 2573
Fragments arranged by size:
2573 1423 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5152
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2883 3841 442
Size: 416 53 83 399 24 1466 958 1753
Fragments arranged by size:
1753 1466 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5152
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3812 1239
Size: 2573 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3277 4142 4440 3277
Size: 865 298 3989
Fragments arranged by size:
3989 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3815 882
Size: 617 2316 2219
Fragments arranged by size:
2316 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2943 493
Size: 711 1739 2702
Fragments arranged by size:
2702 1739 711
BsaBI GATnn'nnATC
Cuts at: 5146 5146
Size: 5152
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2959 3341 3976 275
Size: 53 83 186 936 1426 382 635 1451
Fragments arranged by size:
1451 1426 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3585 3983 4257 4404 4815 3585
Size: 398 274 147 411 3922
Fragments arranged by size:
3922 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4927
Fragments arranged by size:
4927 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2084 1186
Size: 898 4254
BseYI C'CCAG_C
Cuts at: 4355 4851 4355
Size: 496 4656
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4579
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2602 3363 4391 1540
Size: 275 186 601 761 1028 2301
Fragments arranged by size:
2301 1028 761 601 275 186
BsiHKAI G_wGCw'C
Cuts at: 3213 3298 4369 3213
Size: 85 1071 3996
Fragments arranged by size:
3996 1071 85
BsmI GAATG_Cn'
Cuts at: 2663 2756 2663
Size: 93 5059
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2471 3213 3298 4369 1391
Size: 399 681 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 681 399 85
BspEI T'CCGG_A
Cuts at: 4815 4815
Size: 5152
BspHI T'CATG_A
Cuts at: 3041 4771 3041
Size: 1730 3422
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2507 844
Size: 1663 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3039 1394
Size: 429 1216 3507
Fragments arranged by size:
3507 1216 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3647 3821 65
Size: 1183 2399 174 1396
Fragments arranged by size:
2399 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3796 3983 1700
Size: 110 1986 187 2869
Fragments arranged by size:
2869 1986 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5152
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5152
BssSI C'ACGA_G
Cuts at: 3212 4224 3212
Size: 1012 4140
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5152
BstBI TT'CG_AA
Cuts at: 3956 3956
Size: 5152
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5152
BstYI r'GATC_y
Cuts at: 1972 2482 2849 3234 3251 4703 4789 4801 5147
Size: 510 367 385 17 1452 86 12 346
Cuts at: 5147 1972
Size: 1977
Fragments arranged by size:
1977 1452 510 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4600
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4413
Fragments arranged by size:
4413 683 56
BtsI GCAGTG_nn'
Cuts at: 2668 3462 3482 2668
Size: 794 20 4338
Fragments arranged by size:
4338 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5152
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5117
DraI TTT'AAA
Cuts at: 2456 2456
Size: 5152
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4159 809
Size: 507 2843 1802
Fragments arranged by size:
2843 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2599 3488 5117
Size: 54 1425 50 275 18 769 889 1629
Cuts at: 5117 8
Size: 43
Fragments arranged by size:
1629 1425 889 769 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2599 1537
Size: 275 787 4090
Fragments arranged by size:
4090 787 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3082 1353
Size: 1729 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3739 4113 4259 387
Size: 1064 138 2150 374 146 1280
Fragments arranged by size:
2150 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2194 3215 3812 4599 4867 1239
Size: 393 562 1021 597 787 268 1524
Fragments arranged by size:
1524 1021 787 597 562 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2038 2038
Size: 5152
EcoRI G'AATT_C
Cuts at: 2461 2839 2461
Size: 378 4774
FspI TGC'GCA
Cuts at: 3658 3658
Size: 5152
HaeII r_GCGC'y
Cuts at: 1678 4299 1678
Size: 2621 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3793 3825 3867 3899 1373
Size: 32 135 32 2221 32 42 32 2626
Fragments arranged by size:
2626 2221 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2496 2742 669
Size: 988 281 558 246 3079
Fragments arranged by size:
3079 988 558 281 246
HindIII A'AGCT_T
Cuts at: 748 2316 748
Size: 1568 3584
HpaI GTT'AAC
Cuts at: 2742 2742
Size: 5152
KpnI G_GTAC'C
Cuts at: 2477 2477
Size: 5152
MfeI C'AATT_G
Cuts at: 2751 2751
Size: 5152
MluI A'CGCG_T
Cuts at: 5028 5028
Size: 5152
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2141 4266 4450 1305
Size: 836 2125 184 2007
Fragments arranged by size:
2125 2007 836 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3330
Fragments arranged by size:
3330 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3110 3469 3628 518
Size: 648 1944 359 159 2042
Fragments arranged by size:
2042 1944 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2568 3245 4393 4638 1606
Size: 962 677 1148 245 2120
Fragments arranged by size:
2120 1148 962 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4600
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5152
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5152
NotI GC'GGCC_GC
Cuts at: 2599 2599
Size: 5152
NspI r_CATG'y
Cuts at: 1132 1229 2510 4055 1132
Size: 97 1281 1545 2229
Fragments arranged by size:
2229 1545 1281 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5152
PciI A'CATG_T
Cuts at: 4051 4051
Size: 5152
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2065 1108
Size: 957 4195
PfoI T'CCnGG_A
Cuts at: 2304 2304
Size: 5152
PmeI GTTT'AAAC
Cuts at: 2456 2456
Size: 5152
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2129 2161 3221 3253 4734 4766 2129
Size: 32 1060 32 1481 32 2515
Fragments arranged by size:
2515 1481 1060 32 32 32
PpuMI rG'GwC_Cy
Cuts at: 2038 2038
Size: 5152
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5152
PsiI TTA'TAA
Cuts at: 2722 2722
Size: 5152
PstI C_TGCA'G
Cuts at: 830 2504 830
Size: 1674 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5152
SalI G'TCGA_C
Cuts at: 1936 2494 1936
Size: 558 4594
SbfI CC_TGCA'GG
Cuts at: 2504 2504
Size: 5152
ScaI AGT'ACT
Cuts at: 3400 5112 3400
Size: 1712 3440
SfcI C'TryA_G
Cuts at: 826 1045 2014 2148 2500 3635 4316 4507 826
Size: 219 969 134 352 1135 681 191 1471
Fragments arranged by size:
1471 1135 969 681 352 219 191 134
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5152
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5152
SmaI CCC'GGG
Cuts at: 1872 2044 2479 1872
Size: 172 435 4545
Fragments arranged by size:
4545 435 172
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3256 4157 4419 820
Size: 197 926 1313 901 262 1553
Fragments arranged by size:
1553 1313 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2943 493
Size: 2450 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5152
SphI G_CATG'C
Cuts at: 1132 2510 1132
Size: 1378 3774
SspI AAT'ATT
Cuts at: 5 52 3076 5
Size: 47 3024 2081
Fragments arranged by size:
3024 2081 47
StuI AGG'CCT
Cuts at: 1517 2420 1517
Size: 903 4249
StyI C'CwwG_G
Cuts at: 513 1065 2368 2591 513
Size: 552 1303 223 3074
Fragments arranged by size:
3074 1303 552 223
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2458 3179 3196 3349 3534 3979 325
Size: 1255 878 721 17 153 185 445 1498
Fragments arranged by size:
1498 1255 878 721 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3398 5110 96
Size: 274 80 33 51 1443 1421 1712 138
Fragments arranged by size:
1712 1443 1421 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5112 5144 5112
Size: 32 5120
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5152
XbaI T'CTAG_A
Cuts at: 2488 2488
Size: 5152
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5152
XmaI C'CCGG_G
Cuts at: 1870 2042 2477 1870
Size: 172 435 4545
Fragments arranged by size:
4545 435 172
XmnI GAAnn'nnTTC
Cuts at: 3281 3281
Size: 5152
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2960 276
Size: 53 83 186 936 1426 2468
Fragments arranged by size:
2468 1426 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI
EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PfoI
PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI
SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI
SpeI SphI SspI StuI StyI TaqII TatI TstI
Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI BaeI BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI
PspXI PsrI PvuII RsrII SacI SacII SanDI SapI
SexAI SfiI SfoI SrfI SwaI XcmI