Restriction map for
pFN21AE3075
(Circular) (Six-base) MAPSORT of: pFN21AE3075.seq Check: 576 from: 1 to: 5410
pFN21AE3075 5410 bp
With 182 enzymes: SgfI *
March 28, 2012 12:59 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3220 278
Size: 53 83 186 936 1684 2468
Fragments arranged by size:
2468 1684 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2753 1937
Size: 816 4594
Acc65I G'GTAC_C
Cuts at: 2079 2731 2079
Size: 652 4758
AclI AA'CG_TT
Cuts at: 1563 3537 3910 1563
Size: 1974 373 3063
Fragments arranged by size:
3063 1974 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3473 4857 5125 1632
Size: 1841 1384 268 1917
Fragments arranged by size:
1917 1841 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5213
AflIII A'CryG_T
Cuts at: 1203 4309 5286 1203
Size: 3106 977 1327
Fragments arranged by size:
3106 1327 977
AgeI A'CCGG_T
Cuts at: 4241 4241
Size: 5410
AhdI GACnn_n'nnGTC
Cuts at: 4139 4139
Size: 5410
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5410
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5410
AlwNI CAG_nnn'CTG
Cuts at: 3153 4725 3153
Size: 1572 3838
ApaLI G'TGCA_C
Cuts at: 3467 4623 3467
Size: 1156 4254
ApoI r'AATT_y
Cuts at: 1493 2552 2607 2719 2945 3097 5206 1493
Size: 1059 55 112 226 152 2109 1697
Fragments arranged by size:
2109 1697 1059 226 152 112 55
AseI AT'TA_AT
Cuts at: 160 1032 3964 160
Size: 872 2932 1606
Fragments arranged by size:
2932 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5410
AvaI C'yCGr_G
Cuts at: 1870 1943 2735 1870
Size: 73 792 4545
Fragments arranged by size:
4545 792 73
BamHI G'GATC_C
Cuts at: 2740 3107 2740
Size: 367 5043
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2079 2731 4186 618
Size: 325 217 627 292 652 1455 1842
Fragments arranged by size:
1842 1455 652 627 325 292 217
BanII G_rGCy'C
Cuts at: 1391 2097 2729 1391
Size: 706 632 4072
Fragments arranged by size:
4072 706 632
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2041 928
Size: 971 142 4297
Fragments arranged by size:
4297 971 142
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 1987 2021 3601 3635 1903
Size: 34 50 34 1580 34 3678
Fragments arranged by size:
3678 1580 50 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3302 4512 3302
Size: 1210 4200
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5410
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4021 136
Size: 107 122 71 631 605 2349 1525
Fragments arranged by size:
2349 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5405 5405
Size: 5410
BlpI GC'TnA_GC
Cuts at: 2827 2827
Size: 5410
Bme1580I G_kGCm'C
Cuts at: 1790 3471 4627 1790
Size: 1681 1156 2573
Fragments arranged by size:
2573 1681 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5410
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2367 3141 4099
Size: 416 53 83 399 24 950 774 958
Cuts at: 4099 442
Size: 1753
Fragments arranged by size:
1753 958 950 774 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5410
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2457 2457
Size: 5410
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2154 4070 1239
Size: 915 1916 2579
Fragments arranged by size:
2579 1916 915
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2015 3535 4400 4698 2015
Size: 1520 865 298 2727
Fragments arranged by size:
2727 1520 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4073 882
Size: 617 2574 2219
Fragments arranged by size:
2574 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3201 493
Size: 711 1997 2702
Fragments arranged by size:
2702 1997 711
BsaBI GATnn'nnATC
Cuts at: 5404 5404
Size: 5410
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3217 3599 4234 275
Size: 53 83 186 936 1684 382 635 1451
Fragments arranged by size:
1684 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3843 4241 4515 4662 5073 3843
Size: 398 274 147 411 4180
Fragments arranged by size:
4180 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5185
Fragments arranged by size:
5185 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5410
BseYI C'CCAG_C
Cuts at: 2308 2565 4613 5109 2308
Size: 257 2048 496 2609
Fragments arranged by size:
2609 2048 496 257
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4837
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2860 3621 4649 1540
Size: 275 186 859 761 1028 2301
Fragments arranged by size:
2301 1028 859 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2097 3471 3556 4627 2097
Size: 1374 85 1071 2880
Fragments arranged by size:
2880 1374 1071 85
BsmI GAATG_Cn'
Cuts at: 2515 2921 3014 2515
Size: 406 93 4911
Fragments arranged by size:
4911 406 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2097 2729 3471 3556 4627 1391
Size: 399 307 632 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 632 399 307 85
BspEI T'CCGG_A
Cuts at: 5073 5073
Size: 5410
BspHI T'CATG_A
Cuts at: 3299 5029 3299
Size: 1730 3680
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2091 2765 844
Size: 1247 674 3489
Fragments arranged by size:
3489 1247 674
BsrBI CCG'CTC
Cuts at: 1394 1823 3297 1394
Size: 429 1474 3507
Fragments arranged by size:
3507 1474 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2334 3905 4079 65
Size: 1183 1086 1571 174 1396
Fragments arranged by size:
1571 1396 1183 1086 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4054 4241 1700
Size: 110 2244 187 2869
Fragments arranged by size:
2869 2244 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5410
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5410
BssSI C'ACGA_G
Cuts at: 3470 4482 3470
Size: 1012 4398
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5410
BstBI TT'CG_AA
Cuts at: 4214 4214
Size: 5410
BstEII G'GTnAC_C
Cuts at: 1184 2464 1184
Size: 1280 4130
BstYI r'GATC_y
Cuts at: 1972 2673 2740 3107 3492 3509 4961 5047 5059
Size: 701 67 367 385 17 1452 86 12
Cuts at: 5059 5405 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 701 385 367 346 86 67
17 12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4858
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4671
Fragments arranged by size:
4671 683 56
BtsI GCAGTG_nn'
Cuts at: 2926 3720 3740 2926
Size: 794 20 4596
Fragments arranged by size:
4596 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5410
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5375
DraI TTT'AAA
Cuts at: 2714 2714
Size: 5410
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4417 809
Size: 507 3101 1802
Fragments arranged by size:
3101 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2857 3746 5375
Size: 54 1425 50 275 18 1027 889 1629
Cuts at: 5375 8
Size: 43
Fragments arranged by size:
1629 1425 1027 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2857 1537
Size: 275 1045 4090
Fragments arranged by size:
4090 1045 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2462 3340 1353
Size: 1109 878 3423
Fragments arranged by size:
3423 1109 878
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3997 4371 4517 387
Size: 1064 138 2408 374 146 1280
Fragments arranged by size:
2408 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2095 2095
Size: 5410
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2154 3473 4070 4857 5125 1239
Size: 393 522 1319 597 787 268 1524
Fragments arranged by size:
1524 1319 787 597 522 393 268
EcoNI CCTnn'n_nnAGG
Cuts at: 2030 2030
Size: 5410
EcoRI G'AATT_C
Cuts at: 2719 3097 2719
Size: 378 5032
FspI TGC'GCA
Cuts at: 3916 3916
Size: 5410
HaeII r_GCGC'y
Cuts at: 1678 4557 1678
Size: 2879 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2607 2639 4051 4083 4125
Size: 32 135 32 1035 32 1412 32 42
Cuts at: 4125 4157 1373
Size: 32 2626
Fragments arranged by size:
2626 1412 1035 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2347 2754 3000 669
Size: 988 281 409 407 246 3079
Fragments arranged by size:
3079 988 409 407 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5410
HpaI GTT'AAC
Cuts at: 3000 3000
Size: 5410
KpnI G_GTAC'C
Cuts at: 2083 2735 2083
Size: 652 4758
MfeI C'AATT_G
Cuts at: 3009 3009
Size: 5410
MluI A'CGCG_T
Cuts at: 5286 5286
Size: 5410
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4524 4708 1305
Size: 3219 184 2007
Fragments arranged by size:
3219 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3588
Fragments arranged by size:
3588 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2634 3368 3727 3886 518
Size: 648 1468 734 359 159 2042
Fragments arranged by size:
2042 1468 734 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2244 2308 2826 3503 4651 4896 1606
Size: 638 64 518 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 638 518 245 64
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4858
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5410
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5410
NotI GC'GGCC_GC
Cuts at: 2857 2857
Size: 5410
NspI r_CATG'y
Cuts at: 1132 1229 2768 4313 1132
Size: 97 1539 1545 2229
Fragments arranged by size:
2229 1545 1539 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5410
PciI A'CATG_T
Cuts at: 4309 4309
Size: 5410
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2018 1108
Size: 910 4500
PmeI GTTT'AAAC
Cuts at: 2714 2714
Size: 5410
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3479 3511 4992 5024 3479
Size: 32 1481 32 3865
Fragments arranged by size:
3865 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5410
PsiI TTA'TAA
Cuts at: 2980 2980
Size: 5410
PstI C_TGCA'G
Cuts at: 830 2671 2762 830
Size: 1841 91 3478
Fragments arranged by size:
3478 1841 91
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5410
PvuII CAG'CTG
Cuts at: 2308 2308
Size: 5410
SacI G_AGCT'C
Cuts at: 2097 2097
Size: 5410
SalI G'TCGA_C
Cuts at: 1936 2752 1936
Size: 816 4594
SapI GCTCTTCn'nnn_
Cuts at: 2462 2462
Size: 5410
SbfI CC_TGCA'GG
Cuts at: 2762 2762
Size: 5410
ScaI AGT'ACT
Cuts at: 3658 5370 3658
Size: 1712 3698
SfcI C'TryA_G
Cuts at: 826 1045 2128 2230 2667 2758 3893 4574 4765
Size: 219 1083 102 437 91 1135 681 191
Cuts at: 4765 826
Size: 1471
Fragments arranged by size:
1471 1135 1083 681 437 219 191 102
91
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5410
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5410
SmaI CCC'GGG
Cuts at: 1872 2737 1872
Size: 865 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2030 3514 4415 4677 820
Size: 197 926 87 1484 901 262 1553
Fragments arranged by size:
1553 1484 926 901 262 197 87
SnaBI TAC'GTA
Cuts at: 493 3201 493
Size: 2708 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5410
SphI G_CATG'C
Cuts at: 1132 2768 1132
Size: 1636 3774
SspI AAT'ATT
Cuts at: 5 52 3334 5
Size: 47 3282 2081
Fragments arranged by size:
3282 2081 47
StuI AGG'CCT
Cuts at: 1517 2155 1517
Size: 638 4772
StyI C'CwwG_G
Cuts at: 513 1065 2849 513
Size: 552 1784 3074
Fragments arranged by size:
3074 1784 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2428 3437 3454 3607 3792 4237 325
Size: 1255 848 1009 17 153 185 445 1498
Fragments arranged by size:
1498 1255 1009 848 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3656 5368 96
Size: 274 80 33 51 1443 1679 1712 138
Fragments arranged by size:
1712 1679 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5370 5402 5370
Size: 32 5378
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5410
XbaI T'CTAG_A
Cuts at: 2746 2746
Size: 5410
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2011 2011
Size: 5410
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5410
XmaI C'CCGG_G
Cuts at: 1870 2735 1870
Size: 865 4545
XmnI GAAnn'nnTTC
Cuts at: 3539 3539
Size: 5410
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3218 276
Size: 53 83 186 936 1684 2468
Fragments arranged by size:
2468 1684 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI
Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NspI PasI PciI PflMI
PmeI PpiI PshAI PsiI PstI PvuI PvuII SacI
SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
DraIII EcoO109I EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI
PspOMI PspXI PsrI RsrII SacII SanDI SexAI SfiI
SfoI SrfI SwaI