Restriction map for
pFN21AE3024
(Circular) (Six-base) MAPSORT of: pFN21AE3024.seq Check: 107 from: 1 to: 5128
pFN21AE3024 5128 bp
With 182 enzymes: SgfI *
March 28, 2012 12:48 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2938 278
Size: 53 83 186 936 1402 2468
Fragments arranged by size:
2468 1402 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2471 1937
Size: 534 4594
Acc65I G'GTAC_C
Cuts at: 2449 2449
Size: 5128
AclI AA'CG_TT
Cuts at: 1563 2427 3255 3628 1563
Size: 864 828 373 3063
Fragments arranged by size:
3063 864 828 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3191 4575 4843 1632
Size: 1559 1384 268 1917
Fragments arranged by size:
1917 1559 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4931
AflIII A'CryG_T
Cuts at: 1203 2316 4027 5004 1203
Size: 1113 1711 977 1327
Fragments arranged by size:
1711 1327 1113 977
AgeI A'CCGG_T
Cuts at: 3959 3959
Size: 5128
AhdI GACnn_n'nnGTC
Cuts at: 3857 3857
Size: 5128
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5128
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5128
AlwNI CAG_nnn'CTG
Cuts at: 2871 4443 2871
Size: 1572 3556
ApaLI G'TGCA_C
Cuts at: 3185 4341 3185
Size: 1156 3972
ApoI r'AATT_y
Cuts at: 1493 2437 2663 2815 4924 1493
Size: 944 226 152 2109 1697
Fragments arranged by size:
2109 1697 944 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3682 160
Size: 872 2650 1606
Fragments arranged by size:
2650 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5128
AvaI C'yCGr_G
Cuts at: 1870 1943 2453 1870
Size: 73 510 4545
Fragments arranged by size:
4545 510 73
BamHI G'GATC_C
Cuts at: 2458 2825 2458
Size: 367 4761
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2449 3904 618
Size: 325 217 627 662 1455 1842
Fragments arranged by size:
1842 1455 662 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2228 2447 1391
Size: 837 219 4072
Fragments arranged by size:
4072 837 219
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4157
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3319 3353 1903
Size: 34 1382 34 3678
Fragments arranged by size:
3678 1382 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3020 4230 3020
Size: 1210 3918
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5128
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3739 136
Size: 107 122 71 631 605 2067 1525
Fragments arranged by size:
2067 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2246 5123 2246
Size: 2877 2251
BlpI GC'TnA_GC
Cuts at: 2545 2545
Size: 5128
Bme1580I G_kGCm'C
Cuts at: 1790 2288 3189 4345 1790
Size: 498 901 1156 2573
Fragments arranged by size:
2573 1156 901 498
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5128
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2859 3817 442
Size: 416 53 83 399 24 1442 958 1753
Fragments arranged by size:
1753 1442 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5128
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2120 2212 2222 3788 1239
Size: 881 92 10 1566 2579
Fragments arranged by size:
2579 1566 881 92 10
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3253 4118 4416 3253
Size: 865 298 3965
Fragments arranged by size:
3965 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2382 3791 882
Size: 617 883 1409 2219
Fragments arranged by size:
2219 1409 883 617
BsaAI yAC'GTr
Cuts at: 493 1204 2919 493
Size: 711 1715 2702
Fragments arranged by size:
2702 1715 711
BsaBI GATnn'nnATC
Cuts at: 5122 5122
Size: 5128
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2935 3317 3952 275
Size: 53 83 186 936 1402 382 635 1451
Fragments arranged by size:
1451 1402 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3561 3959 4233 4380 4791 3561
Size: 398 274 147 411 3898
Fragments arranged by size:
3898 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4903
Fragments arranged by size:
4903 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5128
BseYI C'CCAG_C
Cuts at: 2110 2281 4331 4827 2110
Size: 171 2050 496 2411
Fragments arranged by size:
2411 2050 496 171
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2145 2189 2201 1163
Size: 573 409 44 12 4090
Fragments arranged by size:
4090 573 409 44 12
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2578 3339 4367 1540
Size: 275 186 577 761 1028 2301
Fragments arranged by size:
2301 1028 761 577 275 186
BsiHKAI G_wGCw'C
Cuts at: 2350 3189 3274 4345 2350
Size: 839 85 1071 3133
Fragments arranged by size:
3133 1071 839 85
BsmI GAATG_Cn'
Cuts at: 2425 2639 2732 2425
Size: 214 93 4821
Fragments arranged by size:
4821 214 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2228 2288 2350 2447 3189 3274 4345
Size: 399 438 60 62 97 742 85 1071
Cuts at: 4345 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 438 399 97 85 62
60
BspEI T'CCGG_A
Cuts at: 4791 4791
Size: 5128
BspHI T'CATG_A
Cuts at: 3017 4747 3017
Size: 1730 3398
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2483 844
Size: 1639 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3015 1394
Size: 429 1192 3507
Fragments arranged by size:
3507 1192 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3623 3797 65
Size: 1183 2375 174 1396
Fragments arranged by size:
2375 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3772 3959 1700
Size: 110 1962 187 2869
Fragments arranged by size:
2869 1962 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5128
BssHII G'CGCG_C
Cuts at: 1925 2144 1925
Size: 219 4909
BssSI C'ACGA_G
Cuts at: 3188 4200 3188
Size: 1012 4116
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5128
BstBI TT'CG_AA
Cuts at: 3932 3932
Size: 5128
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5128
BstXI CCAn_nnnn'nTGG
Cuts at: 2200 2380 2200
Size: 180 4948
BstYI r'GATC_y
Cuts at: 1972 2246 2458 2825 3210 3227 4679 4765 4777
Size: 274 212 367 385 17 1452 86 12
Cuts at: 4777 5123 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 385 367 346 274 212 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3637
Fragments arranged by size:
3637 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2378 487
Size: 683 56 1152 3237
Fragments arranged by size:
3237 1152 683 56
BtsI GCAGTG_nn'
Cuts at: 2644 3438 3458 2644
Size: 794 20 4314
Fragments arranged by size:
4314 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5128
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5093
DraI TTT'AAA
Cuts at: 2432 2432
Size: 5128
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4135 809
Size: 507 2819 1802
Fragments arranged by size:
2819 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2121 2575 3464
Size: 54 1425 50 275 18 291 454 889
Cuts at: 3464 5093 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 454 291 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2575 1537
Size: 275 763 4090
Fragments arranged by size:
4090 763 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3058 1353
Size: 1705 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3715 4089 4235 387
Size: 1064 138 2126 374 146 1280
Fragments arranged by size:
2126 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2120 2212 2222 3191 3788 4575 4843
Size: 393 488 92 10 969 597 787 268
Cuts at: 4843 1239
Size: 1524
Fragments arranged by size:
1524 969 787 597 488 393 268 92
10
EcoNI CCTnn'n_nnAGG
Cuts at: 2057 2057
Size: 5128
EcoRI G'AATT_C
Cuts at: 2437 2815 2437
Size: 378 4750
FspI TGC'GCA
Cuts at: 3634 3634
Size: 5128
HaeII r_GCGC'y
Cuts at: 1678 4275 1678
Size: 2597 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2377 2409 3769 3801 3843
Size: 32 135 32 805 32 1360 32 42
Cuts at: 3843 3875 1373
Size: 32 2626
Fragments arranged by size:
2626 1360 805 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2472 2718 669
Size: 988 281 534 246 3079
Fragments arranged by size:
3079 988 534 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5128
HpaI GTT'AAC
Cuts at: 2718 2718
Size: 5128
KpnI G_GTAC'C
Cuts at: 2453 2453
Size: 5128
MfeI C'AATT_G
Cuts at: 2334 2727 2334
Size: 393 4735
MluI A'CGCG_T
Cuts at: 5004 5004
Size: 5128
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2323 4242 4426 1305
Size: 1018 1919 184 2007
Fragments arranged by size:
2007 1919 1018 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3306
Fragments arranged by size:
3306 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3086 3445 3604 518
Size: 648 1920 359 159 2042
Fragments arranged by size:
2042 1920 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2544 3221 4369 4614 1606
Size: 938 677 1148 245 2120
Fragments arranged by size:
2120 1148 938 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3637
Fragments arranged by size:
3637 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5128
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5128
NotI GC'GGCC_GC
Cuts at: 2575 2575
Size: 5128
NspI r_CATG'y
Cuts at: 1132 1229 2281 2413 2486 4031 1132
Size: 97 1052 132 73 1545 2229
Fragments arranged by size:
2229 1545 1052 132 97 73
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5128
PciI A'CATG_T
Cuts at: 4027 4027
Size: 5128
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5128
PmeI GTTT'AAAC
Cuts at: 2432 2432
Size: 5128
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3197 3229 4710 4742 3197
Size: 32 1481 32 3583
Fragments arranged by size:
3583 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5128
PsiI TTA'TAA
Cuts at: 2698 2698
Size: 5128
PstI C_TGCA'G
Cuts at: 830 2480 830
Size: 1650 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5128
SalI G'TCGA_C
Cuts at: 1936 2470 1936
Size: 534 4594
SbfI CC_TGCA'GG
Cuts at: 2480 2480
Size: 5128
ScaI AGT'ACT
Cuts at: 2272 3376 5088 2272
Size: 1104 1712 2312
Fragments arranged by size:
2312 1712 1104
SfcI C'TryA_G
Cuts at: 826 1045 2476 3611 4292 4483 826
Size: 219 1431 1135 681 191 1471
Fragments arranged by size:
1471 1431 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5128
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5128
SmaI CCC'GGG
Cuts at: 1872 2455 1872
Size: 583 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3232 4133 4395 820
Size: 197 926 1289 901 262 1553
Fragments arranged by size:
1553 1289 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2919 493
Size: 2426 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5128
SphI G_CATG'C
Cuts at: 1132 2281 2413 2486 1132
Size: 1149 132 73 3774
Fragments arranged by size:
3774 1149 132 73
SspI AAT'ATT
Cuts at: 5 52 3052 5
Size: 47 3000 2081
Fragments arranged by size:
3000 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5128
StyI C'CwwG_G
Cuts at: 513 1065 2004 2567 513
Size: 552 939 563 3074
Fragments arranged by size:
3074 939 563 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3155 3172 3325 3510 3955 325
Size: 1255 1575 17 153 185 445 1498
Fragments arranged by size:
1575 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2270 3374 5086
Size: 274 80 33 51 1443 293 1104 1712
Cuts at: 5086 96
Size: 138
Fragments arranged by size:
1712 1443 1104 293 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5088 5120 5088
Size: 32 5096
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5128
XbaI T'CTAG_A
Cuts at: 2464 2464
Size: 5128
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2333 2333
Size: 5128
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5128
XmaI C'CCGG_G
Cuts at: 1870 2453 1870
Size: 583 4545
XmnI GAAnn'nnTTC
Cuts at: 3257 3257
Size: 5128
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2936 276
Size: 53 83 186 936 1402 2468
Fragments arranged by size:
2468 1402 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI
EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PmeI
PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I
DraIII EcoICRI EcoO109I EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI
PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII
SanDI SapI SexAI SfiI SfoI SrfI SwaI