Restriction map for
pFN21AE2207
(Circular) (Six-base) MAPSORT of: pFN21AE2207.seq Check: 6017 from: 1 to: 5662
pFN21AE2207 5662 bp
With 182 enzymes: SgfI *
January 31, 2011 17:48 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3472 278
Size: 53 83 186 936 1936 2468
Fragments arranged by size:
2468 1936 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 3005 1937
Size: 1068 4594
Acc65I G'GTAC_C
Cuts at: 2983 2983
Size: 5662
AclI AA'CG_TT
Cuts at: 1563 3789 4162 1563
Size: 2226 373 3063
Fragments arranged by size:
3063 2226 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2864 3725 5109 5377 1632
Size: 1232 861 1384 268 1917
Fragments arranged by size:
1917 1384 1232 861 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5465
AflIII A'CryG_T
Cuts at: 1203 4561 5538 1203
Size: 3358 977 1327
Fragments arranged by size:
3358 1327 977
AgeI A'CCGG_T
Cuts at: 4493 4493
Size: 5662
AhdI GACnn_n'nnGTC
Cuts at: 4391 4391
Size: 5662
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5662
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5662
AlwNI CAG_nnn'CTG
Cuts at: 2407 2441 3405 4977 2407
Size: 34 964 1572 3092
Fragments arranged by size:
3092 1572 964 34
ApaI G_GGCC'C
Cuts at: 2330 2330
Size: 5662
ApaLI G'TGCA_C
Cuts at: 3719 4875 3719
Size: 1156 4506
ApoI r'AATT_y
Cuts at: 1493 2971 3197 3349 5458 1493
Size: 1478 226 152 2109 1697
Fragments arranged by size:
2109 1697 1478 226 152
AseI AT'TA_AT
Cuts at: 160 1032 2253 4216 160
Size: 872 1221 1963 1606
Fragments arranged by size:
1963 1606 1221 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5662
AvaI C'yCGr_G
Cuts at: 1870 1943 2940 2987 1870
Size: 73 997 47 4545
Fragments arranged by size:
4545 997 73 47
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 2764 2797 2764
Size: 33 5629
BamHI G'GATC_C
Cuts at: 2008 2871 2992 3359 2008
Size: 863 121 367 4311
Fragments arranged by size:
4311 863 367 121
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2983 4438 618
Size: 325 217 627 1196 1455 1842
Fragments arranged by size:
1842 1455 1196 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2330 2981 1391
Size: 939 651 4072
Fragments arranged by size:
4072 939 651
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4691
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3853 3887 1903
Size: 34 1916 34 3678
Fragments arranged by size:
3678 1916 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3554 4764 3554
Size: 1210 4452
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5662
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4273 136
Size: 107 122 71 631 605 2601 1525
Fragments arranged by size:
2601 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5657 5657
Size: 5662
BlpI GC'TnA_GC
Cuts at: 3079 3079
Size: 5662
Bme1580I G_kGCm'C
Cuts at: 1790 2330 3723 4879 1790
Size: 540 1393 1156 2573
Fragments arranged by size:
2573 1393 1156 540
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5662
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3393 4351 442
Size: 416 53 83 399 24 1976 958 1753
Fragments arranged by size:
1976 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5662
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2945 4322 1239
Size: 1706 1377 2579
Fragments arranged by size:
2579 1706 1377
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3787 4652 4950 3787
Size: 865 298 4499
Fragments arranged by size:
4499 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4325 882
Size: 617 2826 2219
Fragments arranged by size:
2826 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3453 493
Size: 711 2249 2702
Fragments arranged by size:
2702 2249 711
BsaBI GATnn'nnATC
Cuts at: 5656 5656
Size: 5662
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3469 3851 4486 275
Size: 53 83 186 936 1936 382 635 1451
Fragments arranged by size:
1936 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2466 4095 4493 4767 4914 5325 2466
Size: 1629 398 274 147 411 2803
Fragments arranged by size:
2803 1629 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2684 2714 1178
Size: 30 165 30 1281 30 4126
Fragments arranged by size:
4126 1281 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2187 1186
Size: 1001 4661
BseYI C'CCAG_C
Cuts at: 2472 4865 5361 2472
Size: 2393 496 2773
Fragments arranged by size:
2773 2393 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2382 2872 2908 1163
Size: 573 646 490 36 3917
Fragments arranged by size:
3917 646 573 490 36
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3112 3873 4901 1540
Size: 275 186 1111 761 1028 2301
Fragments arranged by size:
2301 1111 1028 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2277 3723 3808 4879 2277
Size: 1446 85 1071 3060
Fragments arranged by size:
3060 1446 1071 85
BsmI GAATG_Cn'
Cuts at: 2582 3173 3266 2582
Size: 591 93 4978
Fragments arranged by size:
4978 591 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2277 2330 2981 3723 3808 4879 1391
Size: 399 487 53 651 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 651 487 399 85 53
BspEI T'CCGG_A
Cuts at: 2466 5325 2466
Size: 2859 2803
BspHI T'CATG_A
Cuts at: 2236 3551 5281 2236
Size: 1315 1730 2617
Fragments arranged by size:
2617 1730 1315
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2200 2672 3017 844
Size: 1356 472 345 3489
Fragments arranged by size:
3489 1356 472 345
BsrBI CCG'CTC
Cuts at: 1394 1823 3549 1394
Size: 429 1726 3507
Fragments arranged by size:
3507 1726 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2161 4157 4331 65
Size: 1183 913 1996 174 1396
Fragments arranged by size:
1996 1396 1183 913 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2619 4306 4493 1700
Size: 110 809 1687 187 2869
Fragments arranged by size:
2869 1687 809 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5662
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5662
BssSI C'ACGA_G
Cuts at: 3722 4734 3722
Size: 1012 4650
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5662
BstBI TT'CG_AA
Cuts at: 4466 4466
Size: 5662
BstEII G'GTnAC_C
Cuts at: 1184 2418 1184
Size: 1234 4428
BstYI r'GATC_y
Cuts at: 1972 2008 2871 2992 3359 3744 3761 5213 5299
Size: 36 863 121 367 385 17 1452 86
Cuts at: 5299 5311 5657 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 863 385 367 346 121 86
36 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4171
Fragments arranged by size:
4171 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2861 487
Size: 683 56 1635 3288
Fragments arranged by size:
3288 1635 683 56
BtsI GCAGTG_nn'
Cuts at: 2035 2392 2580 2630 2695 2758 3178 3972 3992
Size: 357 188 50 65 63 420 794 20
Cuts at: 3992 2035
Size: 3705
Fragments arranged by size:
3705 794 420 357 188 65 63 50
20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5662
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5627
DraI TTT'AAA
Cuts at: 2966 2966
Size: 5662
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4669 809
Size: 507 3353 1802
Fragments arranged by size:
3353 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 3109 3998 5627
Size: 54 1425 50 275 18 1279 889 1629
Cuts at: 5627 8
Size: 43
Fragments arranged by size:
1629 1425 1279 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 3109 1537
Size: 275 1297 4090
Fragments arranged by size:
4090 1297 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2398 3592 1353
Size: 1045 1194 3423
Fragments arranged by size:
3423 1194 1045
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4249 4623 4769 387
Size: 1064 138 2660 374 146 1280
Fragments arranged by size:
2660 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2864 2945 3725 4322 5109 5377 1239
Size: 393 1232 81 780 597 787 268 1524
Fragments arranged by size:
1524 1232 787 780 597 393 268 81
EcoNI CCTnn'n_nnAGG
Cuts at: 2832 2832
Size: 5662
EcoO109I rG'GnC_Cy
Cuts at: 2171 2326 2327 2521 2592 2171
Size: 155 1 194 71 5241
Fragments arranged by size:
5241 194 155 71 1
EcoRI G'AATT_C
Cuts at: 2971 3349 2971
Size: 378 5284
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2527 2704 2527
Size: 177 5485
FspI TGC'GCA
Cuts at: 4168 4168
Size: 5662
HaeII r_GCGC'y
Cuts at: 1678 4809 1678
Size: 3131 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4303 4335 4377 4409 1373
Size: 32 135 32 2731 32 42 32 2626
Fragments arranged by size:
2731 2626 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 3006 3252 669
Size: 988 281 1068 246 3079
Fragments arranged by size:
3079 1068 988 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5662
HpaI GTT'AAC
Cuts at: 3252 3252
Size: 5662
KpnI G_GTAC'C
Cuts at: 2987 2987
Size: 5662
MfeI C'AATT_G
Cuts at: 3261 3261
Size: 5662
MluI A'CGCG_T
Cuts at: 5538 5538
Size: 5662
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2928 4776 4960 1305
Size: 1623 1848 184 2007
Fragments arranged by size:
2007 1848 1623 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3840
Fragments arranged by size:
3840 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2028 3620 3979 4138 518
Size: 648 862 1592 359 159 2042
Fragments arranged by size:
2042 1592 862 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 3078 3755 4903 5148 1606
Size: 1472 677 1148 245 2120
Fragments arranged by size:
2120 1472 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4171
Fragments arranged by size:
4171 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5662
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5662
NotI GC'GGCC_GC
Cuts at: 3109 3109
Size: 5662
NspI r_CATG'y
Cuts at: 1132 1229 2303 2671 3020 4565 1132
Size: 97 1074 368 349 1545 2229
Fragments arranged by size:
2229 1545 1074 368 349 97
PasI CC'CwG_GG
Cuts at: 1348 2882 1348
Size: 1534 4128
PciI A'CATG_T
Cuts at: 4561 4561
Size: 5662
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2441 1108
Size: 1333 4329
PmeI GTTT'AAAC
Cuts at: 2966 2966
Size: 5662
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3731 3763 5244 5276 3731
Size: 32 1481 32 4117
Fragments arranged by size:
4117 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2521 2592 2521
Size: 71 5591
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5662
PsiI TTA'TAA
Cuts at: 3232 3232
Size: 5662
PspOMI G'GGCC_C
Cuts at: 2326 2326
Size: 5662
PstI C_TGCA'G
Cuts at: 830 3014 830
Size: 2184 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5662
SalI G'TCGA_C
Cuts at: 1936 3004 1936
Size: 1068 4594
SbfI CC_TGCA'GG
Cuts at: 3014 3014
Size: 5662
ScaI AGT'ACT
Cuts at: 2307 3910 5622 2307
Size: 1603 1712 2347
Fragments arranged by size:
2347 1712 1603
SfcI C'TryA_G
Cuts at: 826 1045 3010 4145 4826 5017 826
Size: 219 1965 1135 681 191 1471
Fragments arranged by size:
1965 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5662
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5662
SmaI CCC'GGG
Cuts at: 1872 2942 2989 1872
Size: 1070 47 4545
Fragments arranged by size:
4545 1070 47
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3766 4667 4929 820
Size: 197 926 1823 901 262 1553
Fragments arranged by size:
1823 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3453 493
Size: 2960 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5662
SphI G_CATG'C
Cuts at: 1132 3020 1132
Size: 1888 3774
SspI AAT'ATT
Cuts at: 5 52 3586 5
Size: 47 3534 2081
Fragments arranged by size:
3534 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5662
StyI C'CwwG_G
Cuts at: 513 1065 2004 3101 513
Size: 552 939 1097 3074
Fragments arranged by size:
3074 1097 939 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3689 3706 3859 4044 4489 325
Size: 1255 2109 17 153 185 445 1498
Fragments arranged by size:
2109 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2305 3908 5620
Size: 274 80 33 51 1443 328 1603 1712
Cuts at: 5620 96
Size: 138
Fragments arranged by size:
1712 1603 1443 328 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5622 5654 5622
Size: 32 5630
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5662
XbaI T'CTAG_A
Cuts at: 2768 2998 2768
Size: 230 5432
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2021 2021
Size: 5662
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5662
XmaI C'CCGG_G
Cuts at: 1870 2940 2987 1870
Size: 1070 47 4545
Fragments arranged by size:
4545 1070 47
XmnI GAAnn'nnTTC
Cuts at: 3791 3791
Size: 5662
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3470 276
Size: 53 83 186 936 1936 2468
Fragments arranged by size:
2468 1936 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BaeI BamHI BanI BanII BbsI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PmeI PpiI PpuMI PshAI PsiI PspOMI
PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI
SmaI SmlI SnaBI SpeI SphI SspI StuI StyI
TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI
XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BbeI BbvCI BfrBI
BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII
EcoICRI EcoRV FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PfoI PmlI PspXI PsrI PvuII
RsrII SacI SacII SanDI SapI SexAI SfiI SfoI
SrfI SwaI