Restriction map for
pFN21AE1679
(Circular) (Six-base) MAPSORT of: pFN21AE1679.seq Check: 3050 from: 1 to: 5284
pFN21AE1679 5284 bp
With 182 enzymes: SgfI *
August 16, 2010 14:52 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3094 278
Size: 53 83 186 936 1558 2468
Fragments arranged by size:
2468 1558 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2627 1937
Size: 690 4594
Acc65I G'GTAC_C
Cuts at: 2605 2605
Size: 5284
AclI AA'CG_TT
Cuts at: 1563 3411 3784 1563
Size: 1848 373 3063
Fragments arranged by size:
3063 1848 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3347 4731 4999 1632
Size: 1715 1384 268 1917
Fragments arranged by size:
1917 1715 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5087
AflIII A'CryG_T
Cuts at: 1203 4183 5160 1203
Size: 2980 977 1327
Fragments arranged by size:
2980 1327 977
AgeI A'CCGG_T
Cuts at: 4115 4115
Size: 5284
AhdI GACnn_n'nnGTC
Cuts at: 4013 4013
Size: 5284
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5284
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5284
AlwNI CAG_nnn'CTG
Cuts at: 2221 2317 2517 3027 4599 2221
Size: 96 200 510 1572 2906
Fragments arranged by size:
2906 1572 510 200 96
ApaLI G'TGCA_C
Cuts at: 3341 4497 3341
Size: 1156 4128
ApoI r'AATT_y
Cuts at: 1493 2593 2819 2971 5080 1493
Size: 1100 226 152 2109 1697
Fragments arranged by size:
2109 1697 1100 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3838 160
Size: 872 2806 1606
Fragments arranged by size:
2806 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5284
AvaI C'yCGr_G
Cuts at: 1870 1943 2452 2609 1870
Size: 73 509 157 4545
Fragments arranged by size:
4545 509 157 73
BamHI G'GATC_C
Cuts at: 2614 2981 2614
Size: 367 4917
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2246 2605 4060 618
Size: 325 217 627 459 359 1455 1842
Fragments arranged by size:
1842 1455 627 459 359 325 217
BanII G_rGCy'C
Cuts at: 1391 2478 2603 1391
Size: 1087 125 4072
Fragments arranged by size:
4072 1087 125
BbeI G_GCGC'C
Cuts at: 2250 2250
Size: 5284
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4313
BbvCI CC'TCA_GC
Cuts at: 2363 2363
Size: 5284
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3475 3509 1903
Size: 34 1538 34 3678
Fragments arranged by size:
3678 1538 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3176 4386 3176
Size: 1210 4074
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5284
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2398 2463 3895
Size: 107 122 71 631 605 726 65 1432
Cuts at: 3895 136
Size: 1525
Fragments arranged by size:
1525 1432 726 631 605 122 107 71
65
BglII A'GATC_T
Cuts at: 5279 5279
Size: 5284
BlpI GC'TnA_GC
Cuts at: 2261 2284 2701 2261
Size: 23 417 4844
Fragments arranged by size:
4844 417 23
Bme1580I G_kGCm'C
Cuts at: 1790 3345 4501 1790
Size: 1555 1156 2573
Fragments arranged by size:
2573 1555 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5284
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3015 3973 442
Size: 416 53 83 399 24 1598 958 1753
Fragments arranged by size:
1753 1598 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5284
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2497 2497
Size: 5284
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2548 3944 1239
Size: 1309 1396 2579
Fragments arranged by size:
2579 1396 1309
Bpu10I CC'TnA_GC
Cuts at: 2363 2363
Size: 5284
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3409 4274 4572 3409
Size: 865 298 4121
Fragments arranged by size:
4121 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2071 2129 3947 882
Size: 617 572 58 1818 2219
Fragments arranged by size:
2219 1818 617 572 58
BsaAI yAC'GTr
Cuts at: 493 1204 2233 3075 493
Size: 711 1029 842 2702
Fragments arranged by size:
2702 1029 842 711
BsaBI GATnn'nnATC
Cuts at: 5278 5278
Size: 5284
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2247 2334 3091 3473
Size: 53 83 186 936 714 87 757 382
Cuts at: 3473 4108 275
Size: 635 1451
Fragments arranged by size:
1451 936 757 714 635 382 186 87
83 53
BsaWI w'CCGG_w
Cuts at: 2138 3717 4115 4389 4536 4947 2138
Size: 1579 398 274 147 411 2475
Fragments arranged by size:
2475 1579 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5059
Fragments arranged by size:
5059 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5284
BseYI C'CCAG_C
Cuts at: 4487 4983 4487
Size: 496 4788
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4711
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2123 2157 2384 2421 2734 3495
Size: 275 186 122 34 227 37 313 761
Cuts at: 3495 4523 1540
Size: 1028 2301
Fragments arranged by size:
2301 1028 761 313 275 227 186 122
37 34
BsiHKAI G_wGCw'C
Cuts at: 2331 3345 3430 4501 2331
Size: 1014 85 1071 3114
Fragments arranged by size:
3114 1071 1014 85
BsmI GAATG_Cn'
Cuts at: 2795 2888 2795
Size: 93 5191
BsmBI CGTCTCn'nnnn_
Cuts at: 2267 2267
Size: 5284
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2331 2478 2603 3345 3430 4501 1391
Size: 399 541 147 125 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 541 399 147 125 85
BspEI T'CCGG_A
Cuts at: 4947 4947
Size: 5284
BspHI T'CATG_A
Cuts at: 3173 4903 3173
Size: 1730 3554
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2639 844
Size: 1795 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3171 1394
Size: 429 1348 3507
Fragments arranged by size:
3507 1348 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2176 3779 3953 65
Size: 1183 928 1603 174 1396
Fragments arranged by size:
1603 1396 1183 928 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2109 2122 3928 4115 1700
Size: 110 299 13 1806 187 2869
Fragments arranged by size:
2869 1806 299 187 110 13
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5284
BssHII G'CGCG_C
Cuts at: 1925 2304 2526 1925
Size: 379 222 4683
Fragments arranged by size:
4683 379 222
BssSI C'ACGA_G
Cuts at: 3344 4356 3344
Size: 1012 4272
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2233 2317 2377 794
Size: 1439 84 60 3701
Fragments arranged by size:
3701 1439 84 60
BstBI TT'CG_AA
Cuts at: 4088 4088
Size: 5284
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5284
BstYI r'GATC_y
Cuts at: 1972 2614 2981 3366 3383 4835 4921 4933 5279
Size: 642 367 385 17 1452 86 12 346
Cuts at: 5279 1972
Size: 1977
Fragments arranged by size:
1977 1452 642 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2289 2395 2458 513
Size: 552 939 285 106 63 3339
Fragments arranged by size:
3339 939 552 285 106 63
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4545
Fragments arranged by size:
4545 683 56
BtsI GCAGTG_nn'
Cuts at: 2018 2800 3594 3614 2018
Size: 782 794 20 3688
Fragments arranged by size:
3688 794 782 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5284
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5249
DraI TTT'AAA
Cuts at: 2588 2588
Size: 5284
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4291 809
Size: 507 2975 1802
Fragments arranged by size:
2975 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2124 2154 2322
Size: 54 1425 50 275 18 294 30 168
Cuts at: 2322 2381 2731 3620 5249 8
Size: 59 350 889 1629 43
Fragments arranged by size:
1629 1425 889 350 294 275 168 59
54 50 43 30 18
EagI C'GGCC_G
Cuts at: 1537 1812 2154 2381 2731 1537
Size: 275 342 227 350 4090
Fragments arranged by size:
4090 350 342 275 227
EarI CTCTTCn'nnn_
Cuts at: 1353 3214 1353
Size: 1861 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2089 2482 3871 4245 4391 387
Size: 1064 138 500 393 1389 374 146 1280
Fragments arranged by size:
1389 1280 1064 500 393 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2548 3347 3944 4731 4999 1239
Size: 393 916 799 597 787 268 1524
Fragments arranged by size:
1524 916 799 787 597 393 268
EcoRI G'AATT_C
Cuts at: 2593 2971 2593
Size: 378 4906
FspI TGC'GCA
Cuts at: 2342 3790 2342
Size: 1448 3836
HaeII r_GCGC'y
Cuts at: 1678 2222 2250 2317 4431 1678
Size: 544 28 67 2114 2531
Fragments arranged by size:
2531 2114 544 67 28
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3925 3957 3999 4031 1373
Size: 32 135 32 2353 32 42 32 2626
Fragments arranged by size:
2626 2353 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2628 2874 669
Size: 988 281 690 246 3079
Fragments arranged by size:
3079 988 690 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5284
HpaI GTT'AAC
Cuts at: 2874 2874
Size: 5284
KasI G'GCGC_C
Cuts at: 2246 2246
Size: 5284
KpnI G_GTAC'C
Cuts at: 2609 2609
Size: 5284
MfeI C'AATT_G
Cuts at: 2883 2883
Size: 5284
MluI A'CGCG_T
Cuts at: 5160 5160
Size: 5284
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2484 4398 4582 1305
Size: 1179 1914 184 2007
Fragments arranged by size:
2007 1914 1179 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3462
Fragments arranged by size:
3462 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3242 3601 3760 518
Size: 648 2076 359 159 2042
Fragments arranged by size:
2076 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2153 2397 2460 2514 2568 2700 3377 4525
Size: 547 244 63 54 54 132 677 1148
Cuts at: 4525 4770 1606
Size: 245 2120
Fragments arranged by size:
2120 1148 677 547 245 244 132 63
54 54
NaeI GCC'GGC
Cuts at: 2111 2111
Size: 5284
NarI GG'CG_CC
Cuts at: 2247 2247
Size: 5284
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3793
Fragments arranged by size:
3793 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5284
NgoMIV G'CCGG_C
Cuts at: 2109 2109
Size: 5284
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5284
NotI GC'GGCC_GC
Cuts at: 2731 2731
Size: 5284
NspI r_CATG'y
Cuts at: 1132 1229 2642 4187 1132
Size: 97 1413 1545 2229
Fragments arranged by size:
2229 1545 1413 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5284
PciI A'CATG_T
Cuts at: 4183 4183
Size: 5284
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5284
PmeI GTTT'AAAC
Cuts at: 2588 2588
Size: 5284
PmlI CAC'GTG
Cuts at: 2233 2233
Size: 5284
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3353 3385 4866 4898 3353
Size: 32 1481 32 3739
Fragments arranged by size:
3739 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 2083 1613
Size: 470 4814
PsiI TTA'TAA
Cuts at: 2854 2854
Size: 5284
PstI C_TGCA'G
Cuts at: 830 2108 2313 2636 830
Size: 1278 205 323 3478
Fragments arranged by size:
3478 1278 323 205
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5284
PvuII CAG'CTG
Cuts at: 2568 2568
Size: 5284
SacII CC_GC'GG
Cuts at: 2398 2461 2398
Size: 63 5221
SalI G'TCGA_C
Cuts at: 1936 2626 1936
Size: 690 4594
SbfI CC_TGCA'GG
Cuts at: 2636 2636
Size: 5284
ScaI AGT'ACT
Cuts at: 3532 5244 3532
Size: 1712 3572
SfcI C'TryA_G
Cuts at: 826 1045 2104 2309 2632 3767 4448 4639 826
Size: 219 1059 205 323 1135 681 191 1471
Fragments arranged by size:
1471 1135 1059 681 323 219 205 191
SfoI GGC'GCC
Cuts at: 2248 2248
Size: 5284
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5284
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5284
SmaI CCC'GGG
Cuts at: 1872 2454 2611 1872
Size: 582 157 4545
Fragments arranged by size:
4545 582 157
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3388 4289 4551 820
Size: 197 926 1445 901 262 1553
Fragments arranged by size:
1553 1445 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3075 493
Size: 2582 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5284
SphI G_CATG'C
Cuts at: 1132 2642 1132
Size: 1510 3774
SspI AAT'ATT
Cuts at: 5 52 3208 5
Size: 47 3156 2081
Fragments arranged by size:
3156 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5284
StyI C'CwwG_G
Cuts at: 513 1065 2004 2723 513
Size: 552 939 719 3074
Fragments arranged by size:
3074 939 719 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3311 3328 3481 3666 4111 325
Size: 1255 1731 17 153 185 445 1498
Fragments arranged by size:
1731 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2295 3530 5242
Size: 274 80 33 51 1443 318 1235 1712
Cuts at: 5242 96
Size: 138
Fragments arranged by size:
1712 1443 1235 318 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5244 5276 5244
Size: 32 5252
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5284
XbaI T'CTAG_A
Cuts at: 2620 2620
Size: 5284
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5284
XmaI C'CCGG_G
Cuts at: 1870 2452 2609 1870
Size: 582 157 4545
Fragments arranged by size:
4545 582 157
XmnI GAAnn'nnTTC
Cuts at: 3413 3413
Size: 5284
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3092 276
Size: 53 83 186 936 1558 2468
Fragments arranged by size:
2468 1558 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI
BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI
BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI
BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI
BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI
EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I
HincII HindIII HpaI KasI KpnI MfeI MluI MmeI
MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV
NheI NotI NspI PasI PciI PflMI PmeI PmlI
PpiI PshAI PsiI PstI PvuI PvuII SacII SalI
SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BfrBI
BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I
EcoRV FalI FseI FspAI NruI NsiI PacI PfoI
PpuMI PspOMI PspXI PsrI RsrII SacI SanDI SapI
SexAI SfiI SrfI SwaI XcmI