Restriction map for
pFN21AE1106
(Circular) (Six-base) MAPSORT of: pFN21AE1106.seq Check: 5860 from: 1 to: 4990
pFN21AE1106 4990 bp
With 182 enzymes: SgfI *
August 16, 2010 14:42 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2800 278
Size: 53 83 186 936 1264 2468
Fragments arranged by size:
2468 1264 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2333 1937
Size: 396 4594
Acc65I G'GTAC_C
Cuts at: 2311 2311
Size: 4990
AclI AA'CG_TT
Cuts at: 1563 3117 3490 1563
Size: 1554 373 3063
Fragments arranged by size:
3063 1554 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3053 4437 4705 1632
Size: 1421 1384 268 1917
Fragments arranged by size:
1917 1421 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4793
AflIII A'CryG_T
Cuts at: 1203 3889 4866 1203
Size: 2686 977 1327
Fragments arranged by size:
2686 1327 977
AgeI A'CCGG_T
Cuts at: 3821 3821
Size: 4990
AhdI GACnn_n'nnGTC
Cuts at: 3719 3719
Size: 4990
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 4990
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 4990
AlwNI CAG_nnn'CTG
Cuts at: 2733 4305 2733
Size: 1572 3418
ApaLI G'TGCA_C
Cuts at: 3047 4203 3047
Size: 1156 3834
ApoI r'AATT_y
Cuts at: 1493 2299 2525 2677 4786 1493
Size: 806 226 152 2109 1697
Fragments arranged by size:
2109 1697 806 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3544 160
Size: 872 2512 1606
Fragments arranged by size:
2512 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 4990
AvaI C'yCGr_G
Cuts at: 1870 1943 2315 1870
Size: 73 372 4545
Fragments arranged by size:
4545 372 73
BamHI G'GATC_C
Cuts at: 2320 2687 2320
Size: 367 4623
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2285 2311 3766 618
Size: 325 217 627 498 26 1455 1842
Fragments arranged by size:
1842 1455 627 498 325 217 26
BanII G_rGCy'C
Cuts at: 1391 2139 2309 1391
Size: 748 170 4072
Fragments arranged by size:
4072 748 170
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4019
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3181 3215 1903
Size: 34 1244 34 3678
Fragments arranged by size:
3678 1244 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2882 4092 2882
Size: 1210 3780
BclI T'GATC_A
Cuts at: 1548 1548
Size: 4990
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3601 136
Size: 107 122 71 631 605 1929 1525
Fragments arranged by size:
1929 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 4985 4985
Size: 4990
BlpI GC'TnA_GC
Cuts at: 2407 2407
Size: 4990
Bme1580I G_kGCm'C
Cuts at: 1790 2023 3051 4207 1790
Size: 233 1028 1156 2573
Fragments arranged by size:
2573 1156 1028 233
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 4990
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2721 3679 442
Size: 416 53 83 399 24 1304 958 1753
Fragments arranged by size:
1753 1304 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 4990
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3650 1239
Size: 2411 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2186 3115 3980 4278 2186
Size: 929 865 298 2898
Fragments arranged by size:
2898 929 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3653 882
Size: 617 2154 2219
Fragments arranged by size:
2219 2154 617
BsaAI yAC'GTr
Cuts at: 493 1204 2781 493
Size: 711 1577 2702
Fragments arranged by size:
2702 1577 711
BsaBI GATnn'nnATC
Cuts at: 4984 4984
Size: 4990
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2797 3179 3814 275
Size: 53 83 186 936 1264 382 635 1451
Fragments arranged by size:
1451 1264 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3423 3821 4095 4242 4653 3423
Size: 398 274 147 411 3760
Fragments arranged by size:
3760 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4765
Fragments arranged by size:
4765 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2147 1186
Size: 961 4029
BseYI C'CCAG_C
Cuts at: 2269 4193 4689 2269
Size: 1924 496 2570
Fragments arranged by size:
2570 1924 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4417
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2440 3201 4229 1540
Size: 275 186 439 761 1028 2301
Fragments arranged by size:
2301 1028 761 439 275 186
BsiHKAI G_wGCw'C
Cuts at: 2139 3051 3136 4207 2139
Size: 912 85 1071 2922
Fragments arranged by size:
2922 1071 912 85
BsmI GAATG_Cn'
Cuts at: 2501 2594 2501
Size: 93 4897
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2023 2139 2309 3051 3136 4207 1391
Size: 399 233 116 170 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 233 170 116 85
BspEI T'CCGG_A
Cuts at: 4653 4653
Size: 4990
BspHI T'CATG_A
Cuts at: 2879 4609 2879
Size: 1730 3260
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2345 844
Size: 1501 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2877 1394
Size: 429 1054 3507
Fragments arranged by size:
3507 1054 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2196 3485 3659 65
Size: 1183 948 1289 174 1396
Fragments arranged by size:
1396 1289 1183 948 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3634 3821 1700
Size: 110 1824 187 2869
Fragments arranged by size:
2869 1824 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 4990
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 4990
BssSI C'ACGA_G
Cuts at: 3050 4062 3050
Size: 1012 3978
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2230 794
Size: 1436 3554
BstBI TT'CG_AA
Cuts at: 3794 3794
Size: 4990
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 4990
BstYI r'GATC_y
Cuts at: 1972 2320 2687 3072 3089 4541 4627 4639 4985
Size: 348 367 385 17 1452 86 12 346
Cuts at: 4985 1972
Size: 1977
Fragments arranged by size:
1977 1452 385 367 348 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4438
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4251
Fragments arranged by size:
4251 683 56
BtsI GCAGTG_nn'
Cuts at: 2506 3300 3320 2506
Size: 794 20 4176
Fragments arranged by size:
4176 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 4990
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 4955
DraI TTT'AAA
Cuts at: 2294 2294
Size: 4990
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 3997 809
Size: 507 2681 1802
Fragments arranged by size:
2681 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2064 2437 3326
Size: 54 1425 50 275 18 234 373 889
Cuts at: 3326 4955 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 373 275 234 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2437 1537
Size: 275 625 4090
Fragments arranged by size:
4090 625 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2920 1353
Size: 1567 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2255 3577 3951 4097 387
Size: 1064 138 666 1322 374 146 1280
Fragments arranged by size:
1322 1280 1064 666 374 146 138
EcoICRI GAG'CTC
Cuts at: 2137 2137
Size: 4990
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3053 3650 4437 4705 1239
Size: 393 1421 597 787 268 1524
Fragments arranged by size:
1524 1421 787 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2124 2148 2124
Size: 24 4966
EcoRI G'AATT_C
Cuts at: 2299 2677 2299
Size: 378 4612
FspI TGC'GCA
Cuts at: 3496 3496
Size: 4990
HaeII r_GCGC'y
Cuts at: 1678 4137 1678
Size: 2459 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3631 3663 3705 3737 1373
Size: 32 135 32 2059 32 42 32 2626
Fragments arranged by size:
2626 2059 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2170 2334 2580 669
Size: 988 281 232 164 246 3079
Fragments arranged by size:
3079 988 281 246 232 164
HindIII A'AGCT_T
Cuts at: 748 748
Size: 4990
HpaI GTT'AAC
Cuts at: 2580 2580
Size: 4990
KpnI G_GTAC'C
Cuts at: 2315 2315
Size: 4990
MfeI C'AATT_G
Cuts at: 2589 2589
Size: 4990
MluI A'CGCG_T
Cuts at: 4866 4866
Size: 4990
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4104 4288 1305
Size: 2799 184 2007
Fragments arranged by size:
2799 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2066 10
Size: 54 1425 343 234 2934
Fragments arranged by size:
2934 1425 343 234 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2948 3307 3466 518
Size: 648 1782 359 159 2042
Fragments arranged by size:
2042 1782 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2406 3083 4231 4476 1606
Size: 800 677 1148 245 2120
Fragments arranged by size:
2120 1148 800 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4438
NdeI CA'TA_TG
Cuts at: 387 387
Size: 4990
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 4990
NotI GC'GGCC_GC
Cuts at: 2437 2437
Size: 4990
NspI r_CATG'y
Cuts at: 1132 1229 2348 3893 1132
Size: 97 1119 1545 2229
Fragments arranged by size:
2229 1545 1119 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 4990
PciI A'CATG_T
Cuts at: 3889 3889
Size: 4990
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 4990
PmeI GTTT'AAAC
Cuts at: 2294 2294
Size: 4990
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3059 3091 4572 4604 3059
Size: 32 1481 32 3445
Fragments arranged by size:
3445 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2124 2148 2124
Size: 24 4966
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 4990
PsiI TTA'TAA
Cuts at: 2560 2560
Size: 4990
PstI C_TGCA'G
Cuts at: 830 2213 2226 2342 830
Size: 1383 13 116 3478
Fragments arranged by size:
3478 1383 116 13
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 4990
SacI G_AGCT'C
Cuts at: 2139 2139
Size: 4990
SalI G'TCGA_C
Cuts at: 1936 2332 1936
Size: 396 4594
SanDI GG'GwC_CC
Cuts at: 2124 2124
Size: 4990
SbfI CC_TGCA'GG
Cuts at: 2342 2342
Size: 4990
ScaI AGT'ACT
Cuts at: 3238 4950 3238
Size: 1712 3278
SfcI C'TryA_G
Cuts at: 826 1045 2209 2222 2338 3473 4154 4345 826
Size: 219 1164 13 116 1135 681 191 1471
Fragments arranged by size:
1471 1164 1135 681 219 191 116 13
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 4990
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 4990
SmaI CCC'GGG
Cuts at: 1872 2317 1872
Size: 445 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2201 3094 3995 4257 820
Size: 197 926 258 893 901 262 1553
Fragments arranged by size:
1553 926 901 893 262 258 197
SnaBI TAC'GTA
Cuts at: 493 2781 493
Size: 2288 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 4990
SphI G_CATG'C
Cuts at: 1132 2348 1132
Size: 1216 3774
SspI AAT'ATT
Cuts at: 5 52 2914 5
Size: 47 2862 2081
Fragments arranged by size:
2862 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 4990
StyI C'CwwG_G
Cuts at: 513 1065 2151 2181 2429 513
Size: 552 1086 30 248 3074
Fragments arranged by size:
3074 1086 552 248 30
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3017 3034 3187 3372 3817 325
Size: 1255 1437 17 153 185 445 1498
Fragments arranged by size:
1498 1437 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2160 3236 4948
Size: 274 80 33 51 1443 183 1076 1712
Cuts at: 4948 96
Size: 138
Fragments arranged by size:
1712 1443 1076 274 183 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 4950 4982 4950
Size: 32 4958
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 4990
XbaI T'CTAG_A
Cuts at: 2326 2326
Size: 4990
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 4990
XmaI C'CCGG_G
Cuts at: 1870 2315 1870
Size: 445 4545
XmnI GAAnn'nnTTC
Cuts at: 3119 3119
Size: 4990
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2798 276
Size: 53 83 186 936 1264 2468
Fragments arranged by size:
2468 1264 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI
DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI
EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PmeI
PpiI PpuMI PshAI PsiI PstI PvuI SacI SalI
SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I
Bsu36I DraIII EcoNI EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI
PspOMI PspXI PsrI PvuII RsrII SacII SapI SexAI
SfiI SfoI SrfI SwaI XcmI