Restriction map for
pFN21AE0903
(Circular) (Six-base) MAPSORT of: pFN21AE0903.seq Check: 4499 from: 1 to: 5209
pFN21AE0903 5209 bp
With 182 enzymes: SgfI *
October 20, 2009 10:37 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3019 278
Size: 53 83 186 936 1483 2468
Fragments arranged by size:
2468 1483 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2552 1937
Size: 615 4594
Acc65I G'GTAC_C
Cuts at: 2530 2530
Size: 5209
AclI AA'CG_TT
Cuts at: 1563 3336 3709 1563
Size: 1773 373 3063
Fragments arranged by size:
3063 1773 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2094 2180 2397 3272 4656 4924 1632
Size: 462 86 217 875 1384 268 1917
Fragments arranged by size:
1917 1384 875 462 268 217 86
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5012
AflIII A'CryG_T
Cuts at: 1203 4108 5085 1203
Size: 2905 977 1327
Fragments arranged by size:
2905 1327 977
AgeI A'CCGG_T
Cuts at: 4040 4040
Size: 5209
AhdI GACnn_n'nnGTC
Cuts at: 3938 3938
Size: 5209
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5209
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5209
AlwNI CAG_nnn'CTG
Cuts at: 2952 4524 2952
Size: 1572 3637
ApaLI G'TGCA_C
Cuts at: 3266 4422 3266
Size: 1156 4053
ApoI r'AATT_y
Cuts at: 1493 2214 2435 2518 2744 2896 5005 1493
Size: 721 221 83 226 152 2109 1697
Fragments arranged by size:
2109 1697 721 226 221 152 83
AseI AT'TA_AT
Cuts at: 160 1032 3763 160
Size: 872 2731 1606
Fragments arranged by size:
2731 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5209
AvaI C'yCGr_G
Cuts at: 1870 1943 2534 1870
Size: 73 591 4545
Fragments arranged by size:
4545 591 73
BamHI G'GATC_C
Cuts at: 2539 2906 2539
Size: 367 4842
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2020 2530 3985 618
Size: 325 217 627 233 510 1455 1842
Fragments arranged by size:
1842 1455 627 510 325 233 217
BanII G_rGCy'C
Cuts at: 1391 2528 1391
Size: 1137 4072
BbeI G_GCGC'C
Cuts at: 2024 2024
Size: 5209
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2058 928
Size: 971 159 4079
Fragments arranged by size:
4079 971 159
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3400 3434 1903
Size: 34 1463 34 3678
Fragments arranged by size:
3678 1463 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3101 4311 3101
Size: 1210 3999
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5209
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3820 136
Size: 107 122 71 631 605 2148 1525
Fragments arranged by size:
2148 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2191 5204 2191
Size: 3013 2196
BlpI GC'TnA_GC
Cuts at: 2626 2626
Size: 5209
Bme1580I G_kGCm'C
Cuts at: 1790 3270 4426 1790
Size: 1480 1156 2573
Fragments arranged by size:
2573 1480 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5209
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2940 3898 442
Size: 416 53 83 399 24 1523 958 1753
Fragments arranged by size:
1753 1523 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 2391 1056
Size: 1335 3874
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3869 1239
Size: 2630 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3334 4199 4497 3334
Size: 865 298 4046
Fragments arranged by size:
4046 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3872 882
Size: 617 2373 2219
Fragments arranged by size:
2373 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3000 493
Size: 711 1796 2702
Fragments arranged by size:
2702 1796 711
BsaBI GATnn'nnATC
Cuts at: 5203 5203
Size: 5209
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2021 3016 3398 4033
Size: 53 83 186 936 488 995 382 635
Cuts at: 4033 275
Size: 1451
Fragments arranged by size:
1451 995 936 635 488 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 2150 3642 4040 4314 4461 4872 2150
Size: 1492 398 274 147 411 2487
Fragments arranged by size:
2487 1492 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4984
Fragments arranged by size:
4984 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5209
BseYI C'CCAG_C
Cuts at: 4412 4908 4412
Size: 496 4713
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4636
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2659 3420 4448 1540
Size: 275 186 658 761 1028 2301
Fragments arranged by size:
2301 1028 761 658 275 186
BsiHKAI G_wGCw'C
Cuts at: 3270 3355 4426 3270
Size: 85 1071 4053
Fragments arranged by size:
4053 1071 85
BsmI GAATG_Cn'
Cuts at: 2720 2813 2720
Size: 93 5116
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2528 3270 3355 4426 1391
Size: 399 738 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 738 399 85
BspEI T'CCGG_A
Cuts at: 4872 4872
Size: 5209
BspHI T'CATG_A
Cuts at: 3098 4828 3098
Size: 1730 3479
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2564 844
Size: 1720 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3096 1394
Size: 429 1273 3507
Fragments arranged by size:
3507 1273 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2237 3704 3878 65
Size: 1183 989 1467 174 1396
Fragments arranged by size:
1467 1396 1183 989 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2017 3853 4040 1700
Size: 110 207 1836 187 2869
Fragments arranged by size:
2869 1836 207 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5209
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5209
BssSI C'ACGA_G
Cuts at: 3269 4281 3269
Size: 1012 4197
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5209
BstBI TT'CG_AA
Cuts at: 4013 4013
Size: 5209
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5209
BstYI r'GATC_y
Cuts at: 1972 2191 2407 2467 2539 2906 3291 3308 4760
Size: 219 216 60 72 367 385 17 1452
Cuts at: 4760 4846 4858 5204 1972
Size: 86 12 346 1977
Fragments arranged by size:
1977 1452 385 367 346 219 216 86
72 60 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3718
Fragments arranged by size:
3718 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4470
Fragments arranged by size:
4470 683 56
BtsI GCAGTG_nn'
Cuts at: 2725 3519 3539 2725
Size: 794 20 4395
Fragments arranged by size:
4395 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5209
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5174
DraI TTT'AAA
Cuts at: 2131 2513 2131
Size: 382 4827
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4216 809
Size: 507 2900 1802
Fragments arranged by size:
2900 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2656 3545 5174
Size: 54 1425 50 275 18 826 889 1629
Cuts at: 5174 8
Size: 43
Fragments arranged by size:
1629 1425 889 826 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2656 1537
Size: 275 844 4090
Fragments arranged by size:
4090 844 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3139 1353
Size: 1786 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3796 4170 4316 387
Size: 1064 138 2207 374 146 1280
Fragments arranged by size:
2207 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2094 2180 2397 3272 3869 4656 4924
Size: 393 462 86 217 875 597 787 268
Cuts at: 4924 1239
Size: 1524
Fragments arranged by size:
1524 875 787 597 462 393 268 217
86
EcoRI G'AATT_C
Cuts at: 2435 2518 2896 2435
Size: 83 378 4748
Fragments arranged by size:
4748 378 83
FspI TGC'GCA
Cuts at: 3715 3715
Size: 5209
HaeII r_GCGC'y
Cuts at: 1678 2024 2316 4356 1678
Size: 346 292 2040 2531
Fragments arranged by size:
2531 2040 346 292
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2392 2424 2459 2491 3850
Size: 32 135 32 820 32 35 32 1359
Cuts at: 3850 3882 3924 3956 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1359 820 135 42 35 32 32
32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2553 2799 669
Size: 988 281 615 246 3079
Fragments arranged by size:
3079 988 615 281 246
HindIII A'AGCT_T
Cuts at: 748 2099 748
Size: 1351 3858
HpaI GTT'AAC
Cuts at: 2799 2799
Size: 5209
KasI G'GCGC_C
Cuts at: 2020 2020
Size: 5209
KpnI G_GTAC'C
Cuts at: 2534 2534
Size: 5209
MfeI C'AATT_G
Cuts at: 2808 2808
Size: 5209
MluI A'CGCG_T
Cuts at: 5085 5085
Size: 5209
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4323 4507 1305
Size: 3018 184 2007
Fragments arranged by size:
3018 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3387
Fragments arranged by size:
3387 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3167 3526 3685 518
Size: 648 2001 359 159 2042
Fragments arranged by size:
2042 2001 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2625 3302 4450 4695 1606
Size: 1019 677 1148 245 2120
Fragments arranged by size:
2120 1148 1019 677 245
NaeI GCC'GGC
Cuts at: 2019 2019
Size: 5209
NarI GG'CG_CC
Cuts at: 2021 2021
Size: 5209
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3718
Fragments arranged by size:
3718 939 552
NdeI CA'TA_TG
Cuts at: 387 2245 387
Size: 1858 3351
NgoMIV G'CCGG_C
Cuts at: 2017 2017
Size: 5209
NheI G'CTAG_C
Cuts at: 1052 2387 1052
Size: 1335 3874
NotI GC'GGCC_GC
Cuts at: 2656 2656
Size: 5209
NspI r_CATG'y
Cuts at: 1132 1229 2567 4112 1132
Size: 97 1338 1545 2229
Fragments arranged by size:
2229 1545 1338 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5209
PciI A'CATG_T
Cuts at: 4108 4108
Size: 5209
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5209
PmeI GTTT'AAAC
Cuts at: 2513 2513
Size: 5209
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3278 3310 4791 4823 3278
Size: 32 1481 32 3664
Fragments arranged by size:
3664 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5209
PsiI TTA'TAA
Cuts at: 2779 2779
Size: 5209
PstI C_TGCA'G
Cuts at: 830 2561 830
Size: 1731 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5209
SalI G'TCGA_C
Cuts at: 1936 2551 1936
Size: 615 4594
SbfI CC_TGCA'GG
Cuts at: 2561 2561
Size: 5209
ScaI AGT'ACT
Cuts at: 2258 2306 3457 5169 2258
Size: 48 1151 1712 2298
Fragments arranged by size:
2298 1712 1151 48
SfcI C'TryA_G
Cuts at: 826 1045 2557 3692 4373 4564 826
Size: 219 1512 1135 681 191 1471
Fragments arranged by size:
1512 1471 1135 681 219 191
SfoI GGC'GCC
Cuts at: 2022 2022
Size: 5209
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5209
SgrAI Cr'CCGG_yG
Cuts at: 1700 2017 1700
Size: 317 4892
SmaI CCC'GGG
Cuts at: 1872 2536 1872
Size: 664 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3313 4214 4476 820
Size: 197 926 1370 901 262 1553
Fragments arranged by size:
1553 1370 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3000 493
Size: 2507 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5209
SphI G_CATG'C
Cuts at: 1132 2567 1132
Size: 1435 3774
SspI AAT'ATT
Cuts at: 5 52 3133 5
Size: 47 3081 2081
Fragments arranged by size:
3081 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5209
StyI C'CwwG_G
Cuts at: 513 1065 2004 2648 513
Size: 552 939 644 3074
Fragments arranged by size:
3074 939 644 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3236 3253 3406 3591 4036 325
Size: 1255 1656 17 153 185 445 1498
Fragments arranged by size:
1656 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2256 2304 3455
Size: 274 80 33 51 1443 279 48 1151
Cuts at: 3455 5167 96
Size: 1712 138
Fragments arranged by size:
1712 1443 1151 279 274 138 80 51
48 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2132 2164 5169 5201 2132
Size: 32 3005 32 2140
Fragments arranged by size:
3005 2140 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5209
XbaI T'CTAG_A
Cuts at: 2545 2545
Size: 5209
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5209
XmaI C'CCGG_G
Cuts at: 1870 2534 1870
Size: 664 4545
XmnI GAAnn'nnTTC
Cuts at: 3338 3338
Size: 5209
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3017 276
Size: 53 83 186 936 1483 2468
Fragments arranged by size:
2468 1483 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI
EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI
KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI
NarI NcoI NdeI NgoMIV NheI NotI NspI PasI
PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI
SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI
NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI
PsrI PvuII RsrII SacI SacII SanDI SapI SexAI
SfiI SrfI SwaI XcmI