Restriction map for
pFN21AE0883
(Circular) (Six-base) MAPSORT of: pFN21AE0883.seq Check: 1348 from: 1 to: 5647
pFN21AE0883 5647 bp
With 182 enzymes: SgfI *
October 20, 2009 10:52 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2732 2732
Size: 5647
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2580 3457 278
Size: 53 83 186 936 1044 877 2468
Fragments arranged by size:
2468 1044 936 877 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2228 2990 1937
Size: 291 762 4594
Fragments arranged by size:
4594 762 291
Acc65I G'GTAC_C
Cuts at: 2968 2968
Size: 5647
AclI AA'CG_TT
Cuts at: 1563 3774 4147 1563
Size: 2211 373 3063
Fragments arranged by size:
3063 2211 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2702 2891 3710 5094 5362 1632
Size: 1070 189 819 1384 268 1917
Fragments arranged by size:
1917 1384 1070 819 268 189
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5450
AflIII A'CryG_T
Cuts at: 1203 4546 5523 1203
Size: 3343 977 1327
Fragments arranged by size:
3343 1327 977
AgeI A'CCGG_T
Cuts at: 4478 4478
Size: 5647
AhdI GACnn_n'nnGTC
Cuts at: 2821 4376 2821
Size: 1555 4092
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5647
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5647
AlwNI CAG_nnn'CTG
Cuts at: 3390 4962 3390
Size: 1572 4075
ApaLI G'TGCA_C
Cuts at: 2926 3704 4860 2926
Size: 778 1156 3713
Fragments arranged by size:
3713 1156 778
ApoI r'AATT_y
Cuts at: 1493 2036 2956 3182 3334 5443 1493
Size: 543 920 226 152 2109 1697
Fragments arranged by size:
2109 1697 920 543 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4201 160
Size: 872 3169 1606
Fragments arranged by size:
3169 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5647
AvaI C'yCGr_G
Cuts at: 1870 1943 2972 1870
Size: 73 1029 4545
Fragments arranged by size:
4545 1029 73
BamHI G'GATC_C
Cuts at: 2977 3344 2977
Size: 367 5280
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2267 2968 4423 618
Size: 325 217 627 480 701 1455 1842
Fragments arranged by size:
1842 1455 701 627 480 325 217
BanII G_rGCy'C
Cuts at: 1391 2966 1391
Size: 1575 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4676
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2752 2786 3838 3872 1903
Size: 34 815 34 1052 34 3678
Fragments arranged by size:
3678 1052 815 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2654 3539 4749 2654
Size: 885 1210 3552
Fragments arranged by size:
3552 1210 885
BclI T'GATC_A
Cuts at: 1548 2595 1548
Size: 1047 4600
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4258 136
Size: 107 122 71 631 605 2586 1525
Fragments arranged by size:
2586 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5642 5642
Size: 5647
BlpI GC'TnA_GC
Cuts at: 2062 3064 2062
Size: 1002 4645
Bme1580I G_kGCm'C
Cuts at: 1790 2930 3708 4864 1790
Size: 1140 778 1156 2573
Fragments arranged by size:
2573 1156 1140 778
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5647
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3378 4336 442
Size: 416 53 83 399 24 1961 958 1753
Fragments arranged by size:
1961 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5647
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2835 2835
Size: 5647
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 4307 1239
Size: 3068 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2906 3772 4637 4935 2906
Size: 866 865 298 3618
Fragments arranged by size:
3618 866 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4310 882
Size: 617 2811 2219
Fragments arranged by size:
2811 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3438 493
Size: 711 2234 2702
Fragments arranged by size:
2702 2234 711
BsaBI GATnn'nnATC
Cuts at: 2547 5641 2547
Size: 3094 2553
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2577 3454 3836 4471
Size: 53 83 186 936 1044 877 382 635
Cuts at: 4471 275
Size: 1451
Fragments arranged by size:
1451 1044 936 877 635 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 4080 4478 4752 4899 5310 4080
Size: 398 274 147 411 4417
Fragments arranged by size:
4417 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5422
Fragments arranged by size:
5422 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5647
BseYI C'CCAG_C
Cuts at: 2301 4850 5346 2301
Size: 2549 496 2602
Fragments arranged by size:
2602 2549 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 5074
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3097 3858 4886 1540
Size: 275 186 1096 761 1028 2301
Fragments arranged by size:
2301 1096 1028 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2094 2930 3708 3793 4864 2094
Size: 836 778 85 1071 2877
Fragments arranged by size:
2877 1071 836 778 85
BsmI GAATG_Cn'
Cuts at: 3158 3251 3158
Size: 93 5554
BsmBI CGTCTCn'nnnn_
Cuts at: 2584 2584
Size: 5647
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2094 2930 2966 3708 3793 4864 1391
Size: 399 304 836 36 742 85 1071 2174
Fragments arranged by size:
2174 1071 836 742 399 304 85 36
BspEI T'CCGG_A
Cuts at: 5310 5310
Size: 5647
BspHI T'CATG_A
Cuts at: 3536 5266 3536
Size: 1730 3917
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2732 3002 844
Size: 1888 270 3489
Fragments arranged by size:
3489 1888 270
BsrBI CCG'CTC
Cuts at: 1394 1823 3534 1394
Size: 429 1711 3507
Fragments arranged by size:
3507 1711 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2139 4142 4316 65
Size: 1183 891 2003 174 1396
Fragments arranged by size:
2003 1396 1183 891 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4291 4478 1700
Size: 110 2481 187 2869
Fragments arranged by size:
2869 2481 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5647
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5647
BssSI C'ACGA_G
Cuts at: 3707 4719 3707
Size: 1012 4635
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5647
BstBI TT'CG_AA
Cuts at: 4451 4451
Size: 5647
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5647
BstXI CCAn_nnnn'nTGG
Cuts at: 2122 2122
Size: 5647
BstYI r'GATC_y
Cuts at: 1972 2977 3344 3729 3746 5198 5284 5296 5642
Size: 1005 367 385 17 1452 86 12 346
Cuts at: 5642 1972
Size: 1977
Fragments arranged by size:
1977 1452 1005 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2879 2879
Size: 5647
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4156
Fragments arranged by size:
4156 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2755 487
Size: 683 56 1529 3379
Fragments arranged by size:
3379 1529 683 56
BtsI GCAGTG_nn'
Cuts at: 3163 3957 3977 3163
Size: 794 20 4833
Fragments arranged by size:
4833 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5647
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5612
DraI TTT'AAA
Cuts at: 2951 2951
Size: 5647
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4654 809
Size: 507 3338 1802
Fragments arranged by size:
3338 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 3094 3983 5612
Size: 54 1425 50 275 18 1264 889 1629
Cuts at: 5612 8
Size: 43
Fragments arranged by size:
1629 1425 1264 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 3094 1537
Size: 275 1282 4090
Fragments arranged by size:
4090 1282 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2312 2891 3577 1353
Size: 959 579 686 3423
Fragments arranged by size:
3423 959 686 579
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4234 4608 4754 387
Size: 1064 138 2645 374 146 1280
Fragments arranged by size:
2645 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2702 2891 3710 4307 5094 5362 1239
Size: 393 1070 189 819 597 787 268 1524
Fragments arranged by size:
1524 1070 819 787 597 393 268 189
EcoRI G'AATT_C
Cuts at: 2036 2956 3334 2036
Size: 920 378 4349
Fragments arranged by size:
4349 920 378
FspI TGC'GCA
Cuts at: 4153 4153
Size: 5647
HaeII r_GCGC'y
Cuts at: 1678 4794 1678
Size: 3116 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2807 2839 2845 2877 4288
Size: 32 135 32 1235 32 6 32 1411
Cuts at: 4288 4320 4362 4394 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1411 1235 135 42 32 32 32
32 32 32 6
HincII GTy'rAC
Cuts at: 669 1657 1938 2212 2229 2826 2991 3237 669
Size: 988 281 274 17 597 165 246 3079
Fragments arranged by size:
3079 988 597 281 274 246 165 17
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5647
HpaI GTT'AAC
Cuts at: 3237 3237
Size: 5647
KpnI G_GTAC'C
Cuts at: 2972 2972
Size: 5647
MfeI C'AATT_G
Cuts at: 3246 3246
Size: 5647
MluI A'CGCG_T
Cuts at: 5523 5523
Size: 5647
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4761 4945 1305
Size: 3456 184 2007
Fragments arranged by size:
3456 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3825
Fragments arranged by size:
3825 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3605 3964 4123 518
Size: 648 2439 359 159 2042
Fragments arranged by size:
2439 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2500 2730 3063 3740 4888 5133 1606
Size: 894 230 333 677 1148 245 2120
Fragments arranged by size:
2120 1148 894 677 333 245 230
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4156
Fragments arranged by size:
4156 939 552
NdeI CA'TA_TG
Cuts at: 387 2362 2802 387
Size: 1975 440 3232
Fragments arranged by size:
3232 1975 440
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5647
NotI GC'GGCC_GC
Cuts at: 3094 3094
Size: 5647
NspI r_CATG'y
Cuts at: 1132 1229 2134 3005 4550 1132
Size: 97 905 871 1545 2229
Fragments arranged by size:
2229 1545 905 871 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5647
PciI A'CATG_T
Cuts at: 4546 4546
Size: 5647
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2437 1108
Size: 1329 4318
PmeI GTTT'AAAC
Cuts at: 2951 2951
Size: 5647
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3716 3748 5229 5261 3716
Size: 32 1481 32 4102
Fragments arranged by size:
4102 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 2234 1613
Size: 621 5026
PsiI TTA'TAA
Cuts at: 3217 3217
Size: 5647
PstI C_TGCA'G
Cuts at: 830 2562 2729 2999 830
Size: 1732 167 270 3478
Fragments arranged by size:
3478 1732 270 167
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5647
PvuII CAG'CTG
Cuts at: 2500 2730 2500
Size: 230 5417
SalI G'TCGA_C
Cuts at: 1936 2227 2989 1936
Size: 291 762 4594
Fragments arranged by size:
4594 762 291
SapI GCTCTTCn'nnn_
Cuts at: 2312 2312
Size: 5647
SbfI CC_TGCA'GG
Cuts at: 2999 2999
Size: 5647
ScaI AGT'ACT
Cuts at: 3895 5607 3895
Size: 1712 3935
SfcI C'TryA_G
Cuts at: 826 1045 2232 2558 2725 2995 4130 4811 5002
Size: 219 1187 326 167 270 1135 681 191
Cuts at: 5002 826
Size: 1471
Fragments arranged by size:
1471 1187 1135 681 326 270 219 191
167
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5647
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5647
SmaI CCC'GGG
Cuts at: 1872 2974 1872
Size: 1102 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2921 3751 4652 4914 820
Size: 197 926 978 830 901 262 1553
Fragments arranged by size:
1553 978 926 901 830 262 197
SnaBI TAC'GTA
Cuts at: 493 3438 493
Size: 2945 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5647
SphI G_CATG'C
Cuts at: 1132 3005 1132
Size: 1873 3774
SspI AAT'ATT
Cuts at: 5 52 3571 5
Size: 47 3519 2081
Fragments arranged by size:
3519 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5647
StyI C'CwwG_G
Cuts at: 513 1065 2004 2121 3086 513
Size: 552 939 117 965 3074
Fragments arranged by size:
3074 965 939 552 117
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2315 3674 3691 3844 4029 4474 325
Size: 1255 735 1359 17 153 185 445 1498
Fragments arranged by size:
1498 1359 1255 735 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2181 3893 5605
Size: 274 80 33 51 1443 204 1712 1712
Cuts at: 5605 96
Size: 138
Fragments arranged by size:
1712 1712 1443 274 204 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2156 2188 5607 5639 2156
Size: 32 3419 32 2164
Fragments arranged by size:
3419 2164 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5647
XbaI T'CTAG_A
Cuts at: 2983 2983
Size: 5647
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2438 2438
Size: 5647
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5647
XmaI C'CCGG_G
Cuts at: 1870 2972 1870
Size: 1102 4545
XmnI GAAnn'nnTTC
Cuts at: 2864 3776 2864
Size: 912 4735
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2578 3455 276
Size: 53 83 186 936 1044 877 2468
Fragments arranged by size:
2468 1044 936 877 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I
BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI
EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI
PvuII SalI SapI SbfI ScaI SfcI SgfI SgrAI
SmaI SmlI SnaBI SpeI SphI SspI StuI StyI
TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI
XmnI ZraI
Enzymes that do not cut:
AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI Bpu10I BsiWI BstZ17I DraIII EcoICRI EcoNI EcoO109I
EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI
PsrI RsrII SacI SacII SanDI SexAI SfiI SfoI
SrfI SwaI