Restriction map for
pFN21AE0613
(Circular) (Six-base) MAPSORT of: pFN21AE0613.seq Check: 8578 from: 1 to: 5221
pFN21AE0613 5221 bp
With 182 enzymes: SgfI *
October 20, 2009 10:50 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3031 278
Size: 53 83 186 936 1495 2468
Fragments arranged by size:
2468 1495 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2504 2564 1937
Size: 567 60 4594
Fragments arranged by size:
4594 567 60
Acc65I G'GTAC_C
Cuts at: 2542 2542
Size: 5221
AclI AA'CG_TT
Cuts at: 1563 3348 3721 1563
Size: 1785 373 3063
Fragments arranged by size:
3063 1785 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2304 3284 4668 4936 1632
Size: 672 980 1384 268 1917
Fragments arranged by size:
1917 1384 980 672 268
AflII C'TTAA_G
Cuts at: 820 1017 2374 820
Size: 197 1357 3667
Fragments arranged by size:
3667 1357 197
AflIII A'CryG_T
Cuts at: 1203 4120 5097 1203
Size: 2917 977 1327
Fragments arranged by size:
2917 1327 977
AgeI A'CCGG_T
Cuts at: 2491 4052 2491
Size: 1561 3660
AhdI GACnn_n'nnGTC
Cuts at: 3950 3950
Size: 5221
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5221
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5221
AlwNI CAG_nnn'CTG
Cuts at: 2308 2964 4536 2308
Size: 656 1572 2993
Fragments arranged by size:
2993 1572 656
ApaLI G'TGCA_C
Cuts at: 3278 4434 3278
Size: 1156 4065
ApoI r'AATT_y
Cuts at: 1493 2039 2391 2530 2756 2908 5017 1493
Size: 546 352 139 226 152 2109 1697
Fragments arranged by size:
2109 1697 546 352 226 152 139
AseI AT'TA_AT
Cuts at: 160 1032 3775 160
Size: 872 2743 1606
Fragments arranged by size:
2743 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5221
AvaI C'yCGr_G
Cuts at: 1870 1943 2546 1870
Size: 73 603 4545
Fragments arranged by size:
4545 603 73
BamHI G'GATC_C
Cuts at: 2551 2918 2551
Size: 367 4854
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2542 3997 618
Size: 325 217 627 755 1455 1842
Fragments arranged by size:
1842 1455 755 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2226 2540 1391
Size: 835 314 4072
Fragments arranged by size:
4072 835 314
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2252 2262 2292 928
Size: 971 353 10 30 3857
Fragments arranged by size:
3857 971 353 30 10
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3412 3446 1903
Size: 34 1475 34 3678
Fragments arranged by size:
3678 1475 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3113 4323 3113
Size: 1210 4011
BclI T'GATC_A
Cuts at: 1548 2196 1548
Size: 648 4573
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3832 136
Size: 107 122 71 631 605 2160 1525
Fragments arranged by size:
2160 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5216 5216
Size: 5221
BlpI GC'TnA_GC
Cuts at: 2076 2638 2076
Size: 562 4659
Bme1580I G_kGCm'C
Cuts at: 1790 3282 4438 1790
Size: 1492 1156 2573
Fragments arranged by size:
2573 1492 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5221
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2395 2952 3910
Size: 416 53 83 399 24 978 557 958
Cuts at: 3910 442
Size: 1753
Fragments arranged by size:
1753 978 958 557 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5221
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2031 2228 3881 1239
Size: 792 197 1653 2579
Fragments arranged by size:
2579 1653 792 197
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2381 3346 4211 4509 2381
Size: 965 865 298 3093
Fragments arranged by size:
3093 965 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3884 882
Size: 617 2385 2219
Fragments arranged by size:
2385 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3012 493
Size: 711 1808 2702
Fragments arranged by size:
2702 1808 711
BsaBI GATnn'nnATC
Cuts at: 5215 5215
Size: 5221
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3028 3410 4045 275
Size: 53 83 186 936 1495 382 635 1451
Fragments arranged by size:
1495 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2491 3654 4052 4326 4473 4884 2491
Size: 1163 398 274 147 411 2828
Fragments arranged by size:
2828 1163 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2111 2141 1178
Size: 30 165 30 708 30 4258
Fragments arranged by size:
4258 708 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2066 1186
Size: 880 4341
BseYI C'CCAG_C
Cuts at: 2071 4424 4920 2071
Size: 2353 496 2372
Fragments arranged by size:
2372 2353 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4648
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2671 3432 4460 1540
Size: 275 186 670 761 1028 2301
Fragments arranged by size:
2301 1028 761 670 275 186
BsiHKAI G_wGCw'C
Cuts at: 3282 3367 4438 3282
Size: 85 1071 4065
Fragments arranged by size:
4065 1071 85
BsmI GAATG_Cn'
Cuts at: 2018 2066 2732 2825 2018
Size: 48 666 93 4414
Fragments arranged by size:
4414 666 93 48
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2226 2540 3282 3367 4438 1391
Size: 399 436 314 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 436 399 314 85
BspEI T'CCGG_A
Cuts at: 4884 4884
Size: 5221
BspHI T'CATG_A
Cuts at: 3110 4840 3110
Size: 1730 3491
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2576 844
Size: 1732 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3108 1394
Size: 429 1285 3507
Fragments arranged by size:
3507 1285 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3716 3890 65
Size: 1183 2468 174 1396
Fragments arranged by size:
2468 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2491 3865 4052 1700
Size: 110 681 1374 187 2869
Fragments arranged by size:
2869 1374 681 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5221
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5221
BssSI C'ACGA_G
Cuts at: 3281 4293 3281
Size: 1012 4209
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2308 794
Size: 1514 3707
BstBI TT'CG_AA
Cuts at: 4025 4025
Size: 5221
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5221
BstXI CCAn_nnnn'nTGG
Cuts at: 2055 2055
Size: 5221
BstYI r'GATC_y
Cuts at: 1972 2551 2918 3303 3320 4772 4858 4870 5216
Size: 579 367 385 17 1452 86 12 346
Cuts at: 5216 1972
Size: 1977
Fragments arranged by size:
1977 1452 579 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2450 2450
Size: 5221
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3730
Fragments arranged by size:
3730 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4482
Fragments arranged by size:
4482 683 56
BtsI GCAGTG_nn'
Cuts at: 2737 3531 3551 2737
Size: 794 20 4407
Fragments arranged by size:
4407 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5221
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5186
DraI TTT'AAA
Cuts at: 2525 2525
Size: 5221
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4228 809
Size: 507 2912 1802
Fragments arranged by size:
2912 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2668 3557 5186
Size: 54 1425 50 275 18 838 889 1629
Cuts at: 5186 8
Size: 43
Fragments arranged by size:
1629 1425 889 838 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2668 1537
Size: 275 856 4090
Fragments arranged by size:
4090 856 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3151 1353
Size: 1798 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3808 4182 4328 387
Size: 1064 138 2219 374 146 1280
Fragments arranged by size:
2219 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2031 2228 2304 3284 3881 4668 4936
Size: 393 399 197 76 980 597 787 268
Cuts at: 4936 1239
Size: 1524
Fragments arranged by size:
1524 980 787 597 399 393 268 197
76
EcoNI CCTnn'n_nnAGG
Cuts at: 2135 2135
Size: 5221
EcoO109I rG'GnC_Cy
Cuts at: 2305 2305
Size: 5221
EcoRI G'AATT_C
Cuts at: 2039 2530 2908 2039
Size: 491 378 4352
Fragments arranged by size:
4352 491 378
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2426 2426
Size: 5221
FspI TGC'GCA
Cuts at: 3727 3727
Size: 5221
HaeII r_GCGC'y
Cuts at: 1678 4368 1678
Size: 2690 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2188 2220 3862 3894 3936
Size: 32 135 32 616 32 1642 32 42
Cuts at: 3936 3968 1373
Size: 32 2626
Fragments arranged by size:
2626 1642 616 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2505 2565 2811 669
Size: 988 281 567 60 246 3079
Fragments arranged by size:
3079 988 567 281 246 60
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5221
HpaI GTT'AAC
Cuts at: 2811 2811
Size: 5221
KpnI G_GTAC'C
Cuts at: 2546 2546
Size: 5221
MfeI C'AATT_G
Cuts at: 2820 2820
Size: 5221
MluI A'CGCG_T
Cuts at: 5097 5097
Size: 5221
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4335 4519 1305
Size: 3030 184 2007
Fragments arranged by size:
3030 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3399
Fragments arranged by size:
3399 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3179 3538 3697 518
Size: 648 2013 359 159 2042
Fragments arranged by size:
2042 2013 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2080 2637 3314 4462 4707 1606
Size: 474 557 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 557 474 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3730
Fragments arranged by size:
3730 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5221
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5221
NotI GC'GGCC_GC
Cuts at: 2668 2668
Size: 5221
NspI r_CATG'y
Cuts at: 1132 1229 2477 2579 4124 1132
Size: 97 1248 102 1545 2229
Fragments arranged by size:
2229 1545 1248 102 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5221
PciI A'CATG_T
Cuts at: 4120 4120
Size: 5221
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5221
PmeI GTTT'AAAC
Cuts at: 2525 2525
Size: 5221
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3290 3322 4803 4835 3290
Size: 32 1481 32 3676
Fragments arranged by size:
3676 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5221
PsiI TTA'TAA
Cuts at: 2791 2791
Size: 5221
PstI C_TGCA'G
Cuts at: 830 2573 830
Size: 1743 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5221
SalI G'TCGA_C
Cuts at: 1936 2503 2563 1936
Size: 567 60 4594
Fragments arranged by size:
4594 567 60
SbfI CC_TGCA'GG
Cuts at: 2573 2573
Size: 5221
ScaI AGT'ACT
Cuts at: 3469 5181 3469
Size: 1712 3509
SfcI C'TryA_G
Cuts at: 826 1045 2113 2569 3704 4385 4576 826
Size: 219 1068 456 1135 681 191 1471
Fragments arranged by size:
1471 1135 1068 681 456 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5221
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5221
SmaI CCC'GGG
Cuts at: 1872 2548 1872
Size: 676 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2360 2374 3325 4226 4488 820
Size: 197 926 417 14 951 901 262 1553
Fragments arranged by size:
1553 951 926 901 417 262 197 14
SnaBI TAC'GTA
Cuts at: 493 3012 493
Size: 2519 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5221
SphI G_CATG'C
Cuts at: 1132 2579 1132
Size: 1447 3774
SspI AAT'ATT
Cuts at: 5 52 3145 5
Size: 47 3093 2081
Fragments arranged by size:
3093 2081 47
StuI AGG'CCT
Cuts at: 1517 2455 1517
Size: 938 4283
StyI C'CwwG_G
Cuts at: 513 1065 2004 2131 2660 513
Size: 552 939 127 529 3074
Fragments arranged by size:
3074 939 552 529 127
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3248 3265 3418 3603 4048 325
Size: 1255 1668 17 153 185 445 1498
Fragments arranged by size:
1668 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3467 5179 96
Size: 274 80 33 51 1443 1490 1712 138
Fragments arranged by size:
1712 1490 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5181 5213 5181
Size: 32 5189
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5221
XbaI T'CTAG_A
Cuts at: 2035 2557 2035
Size: 522 4699
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2011 2011
Size: 5221
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5221
XmaI C'CCGG_G
Cuts at: 1870 2546 1870
Size: 676 4545
XmnI GAAnn'nnTTC
Cuts at: 3350 3350
Size: 5221
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3029 276
Size: 53 83 186 936 1495 2468
Fragments arranged by size:
2468 1495 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI
SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I DraIII
EcoICRI EcoRV FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI
PsrI PvuII RsrII SacI SacII SanDI SapI SexAI
SfiI SfoI SrfI SwaI