Restriction map for
pFN21AE0530
(Circular) (Six-base) MAPSORT of: pFN21AE0530.seq Check: 4508 from: 1 to: 5167
pFN21AE0530 5167 bp
With 182 enzymes: SgfI *
October 20, 2009 10:49 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2977 278
Size: 53 83 186 936 1441 2468
Fragments arranged by size:
2468 1441 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2510 1937
Size: 573 4594
Acc65I G'GTAC_C
Cuts at: 2488 2488
Size: 5167
AclI AA'CG_TT
Cuts at: 1563 3294 3667 1563
Size: 1731 373 3063
Fragments arranged by size:
3063 1731 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2174 3230 4614 4882 1632
Size: 542 1056 1384 268 1917
Fragments arranged by size:
1917 1384 1056 542 268
AflII C'TTAA_G
Cuts at: 820 1017 2234 820
Size: 197 1217 3753
Fragments arranged by size:
3753 1217 197
AflIII A'CryG_T
Cuts at: 1203 4066 5043 1203
Size: 2863 977 1327
Fragments arranged by size:
2863 1327 977
AgeI A'CCGG_T
Cuts at: 3998 3998
Size: 5167
AhdI GACnn_n'nnGTC
Cuts at: 3896 3896
Size: 5167
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5167
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5167
AlwNI CAG_nnn'CTG
Cuts at: 2350 2910 4482 2350
Size: 560 1572 3035
Fragments arranged by size:
3035 1572 560
ApaLI G'TGCA_C
Cuts at: 3224 4380 3224
Size: 1156 4011
ApoI r'AATT_y
Cuts at: 1493 2476 2702 2854 4963 1493
Size: 983 226 152 2109 1697
Fragments arranged by size:
2109 1697 983 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3721 160
Size: 872 2689 1606
Fragments arranged by size:
2689 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5167
AvaI C'yCGr_G
Cuts at: 1870 1943 2366 2492 1870
Size: 73 423 126 4545
Fragments arranged by size:
4545 423 126 73
BamHI G'GATC_C
Cuts at: 2497 2864 2497
Size: 367 4800
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2201 2488 3943 618
Size: 325 217 627 414 287 1455 1842
Fragments arranged by size:
1842 1455 627 414 325 287 217
BanII G_rGCy'C
Cuts at: 1391 2013 2486 1391
Size: 622 473 4072
Fragments arranged by size:
4072 622 473
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4196
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3358 3392 1903
Size: 34 1421 34 3678
Fragments arranged by size:
3678 1421 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3059 4269 3059
Size: 1210 3957
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5167
BfrBI ATG'CAT
Cuts at: 2337 2337
Size: 5167
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2393 3778 136
Size: 107 122 71 631 605 721 1385 1525
Fragments arranged by size:
1525 1385 721 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5162 5162
Size: 5167
BlpI GC'TnA_GC
Cuts at: 2012 2584 2012
Size: 572 4595
Bme1580I G_kGCm'C
Cuts at: 1790 3228 4384 1790
Size: 1438 1156 2573
Fragments arranged by size:
2573 1438 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5167
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2898 3856 442
Size: 416 53 83 399 24 1481 958 1753
Fragments arranged by size:
1753 1481 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5167
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2344 2344
Size: 5167
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2147 2339 2432 3827 1239
Size: 908 192 93 1395 2579
Fragments arranged by size:
2579 1395 908 192 93
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3292 4157 4455 3292
Size: 865 298 4004
Fragments arranged by size:
4004 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3830 882
Size: 617 2331 2219
Fragments arranged by size:
2331 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2958 493
Size: 711 1754 2702
Fragments arranged by size:
2702 1754 711
BsaBI GATnn'nnATC
Cuts at: 5161 5161
Size: 5167
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2974 3356 3991 275
Size: 53 83 186 936 1441 382 635 1451
Fragments arranged by size:
1451 1441 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2421 3600 3998 4272 4419 4830 2421
Size: 1179 398 274 147 411 2758
Fragments arranged by size:
2758 1179 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2420 2450 1178
Size: 30 165 30 1017 30 3895
Fragments arranged by size:
3895 1017 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5167
BseYI C'CCAG_C
Cuts at: 2452 4370 4866 2452
Size: 1918 496 2753
Fragments arranged by size:
2753 1918 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4594
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2617 3378 4406 1540
Size: 275 186 616 761 1028 2301
Fragments arranged by size:
2301 1028 761 616 275 186
BsiHKAI G_wGCw'C
Cuts at: 2214 3228 3313 4384 2214
Size: 1014 85 1071 2997
Fragments arranged by size:
2997 1071 1014 85
BsmI GAATG_Cn'
Cuts at: 2339 2678 2771 2339
Size: 339 93 4735
Fragments arranged by size:
4735 339 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2013 2214 2486 3228 3313 4384 1391
Size: 399 223 201 272 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 272 223 201 85
BspEI T'CCGG_A
Cuts at: 2421 4830 2421
Size: 2409 2758
BspHI T'CATG_A
Cuts at: 2251 3056 4786 2251
Size: 805 1730 2632
Fragments arranged by size:
2632 1730 805
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2522 844
Size: 1678 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3054 1394
Size: 429 1231 3507
Fragments arranged by size:
3507 1231 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3662 3836 65
Size: 1183 2414 174 1396
Fragments arranged by size:
2414 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3811 3998 1700
Size: 110 2001 187 2869
Fragments arranged by size:
2869 2001 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5167
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5167
BssSI C'ACGA_G
Cuts at: 3227 4239 3227
Size: 1012 4155
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2035 794
Size: 1241 3926
BstBI TT'CG_AA
Cuts at: 3971 3971
Size: 5167
BstEII G'GTnAC_C
Cuts at: 1184 2111 1184
Size: 927 4240
BstYI r'GATC_y
Cuts at: 1972 2301 2497 2864 3249 3266 4718 4804 4816
Size: 329 196 367 385 17 1452 86 12
Cuts at: 4816 5162 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 385 367 346 329 196 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2077 513
Size: 552 939 73 3603
Fragments arranged by size:
3603 939 552 73
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4428
Fragments arranged by size:
4428 683 56
BtsI GCAGTG_nn'
Cuts at: 2683 3477 3497 2683
Size: 794 20 4353
Fragments arranged by size:
4353 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5167
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5132
DraI TTT'AAA
Cuts at: 2471 2471
Size: 5167
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4174 809
Size: 507 2858 1802
Fragments arranged by size:
2858 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2614 3503 5132
Size: 54 1425 50 275 18 784 889 1629
Cuts at: 5132 8
Size: 43
Fragments arranged by size:
1629 1425 889 784 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2614 1537
Size: 275 802 4090
Fragments arranged by size:
4090 802 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3097 1353
Size: 1744 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3754 4128 4274 387
Size: 1064 138 2165 374 146 1280
Fragments arranged by size:
2165 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2147 2174 2339 2432 3230 3827 4614
Size: 393 515 27 165 93 798 597 787
Cuts at: 4614 4882 1239
Size: 268 1524
Fragments arranged by size:
1524 798 787 597 515 393 268 165
93 27
EcoO109I rG'GnC_Cy
Cuts at: 2407 2407
Size: 5167
EcoRI G'AATT_C
Cuts at: 2476 2854 2476
Size: 378 4789
FspI TGC'GCA
Cuts at: 3673 3673
Size: 5167
HaeII r_GCGC'y
Cuts at: 1678 4314 1678
Size: 2636 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2347 2379 2420 2452 3808
Size: 32 135 32 775 32 41 32 1356
Cuts at: 3808 3840 3882 3914 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1356 775 135 42 41 32 32
32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2511 2757 669
Size: 988 281 573 246 3079
Fragments arranged by size:
3079 988 573 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5167
HpaI GTT'AAC
Cuts at: 2757 2757
Size: 5167
KpnI G_GTAC'C
Cuts at: 2492 2492
Size: 5167
MfeI C'AATT_G
Cuts at: 2766 2766
Size: 5167
MluI A'CGCG_T
Cuts at: 5043 5043
Size: 5167
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2463 4281 4465 1305
Size: 1158 1818 184 2007
Fragments arranged by size:
2007 1818 1158 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3345
Fragments arranged by size:
3345 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3125 3484 3643 518
Size: 648 1959 359 159 2042
Fragments arranged by size:
2042 1959 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2583 3260 4408 4653 1606
Size: 977 677 1148 245 2120
Fragments arranged by size:
2120 1148 977 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 2077 513
Size: 552 939 73 3603
Fragments arranged by size:
3603 939 552 73
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5167
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5167
NotI GC'GGCC_GC
Cuts at: 2614 2614
Size: 5167
NsiI A_TGCA'T
Cuts at: 2339 2339
Size: 5167
NspI r_CATG'y
Cuts at: 1132 1229 2288 2525 4070 1132
Size: 97 1059 237 1545 2229
Fragments arranged by size:
2229 1545 1059 237 97
PasI CC'CwG_GG
Cuts at: 1348 2221 2389 1348
Size: 873 168 4126
Fragments arranged by size:
4126 873 168
PciI A'CATG_T
Cuts at: 4066 4066
Size: 5167
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2078 1108
Size: 970 4197
PmeI GTTT'AAAC
Cuts at: 2471 2471
Size: 5167
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3236 3268 4749 4781 3236
Size: 32 1481 32 3622
Fragments arranged by size:
3622 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5167
PsiI TTA'TAA
Cuts at: 2737 2737
Size: 5167
PsrI GAACnnnnnnTACnnnnnnn_nnnnn'
Cuts at: 2306 2338 2306
Size: 32 5135
PstI C_TGCA'G
Cuts at: 830 2355 2519 830
Size: 1525 164 3478
Fragments arranged by size:
3478 1525 164
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5167
SalI G'TCGA_C
Cuts at: 1936 2509 1936
Size: 573 4594
SbfI CC_TGCA'GG
Cuts at: 2519 2519
Size: 5167
ScaI AGT'ACT
Cuts at: 3415 5127 3415
Size: 1712 3455
SfcI C'TryA_G
Cuts at: 826 1045 2351 2515 3650 4331 4522 826
Size: 219 1306 164 1135 681 191 1471
Fragments arranged by size:
1471 1306 1135 681 219 191 164
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5167
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5167
SmaI CCC'GGG
Cuts at: 1872 2368 2494 1872
Size: 496 126 4545
Fragments arranged by size:
4545 496 126
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2234 3271 4172 4434 820
Size: 197 926 291 1037 901 262 1553
Fragments arranged by size:
1553 1037 926 901 291 262 197
SnaBI TAC'GTA
Cuts at: 493 2958 493
Size: 2465 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5167
SphI G_CATG'C
Cuts at: 1132 2288 2525 1132
Size: 1156 237 3774
Fragments arranged by size:
3774 1156 237
SspI AAT'ATT
Cuts at: 5 52 3091 5
Size: 47 3039 2081
Fragments arranged by size:
3039 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5167
StyI C'CwwG_G
Cuts at: 513 1065 2004 2077 2606 513
Size: 552 939 73 529 3074
Fragments arranged by size:
3074 939 552 529 73
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2130 2213 3194 3211 3364 3549 3994
Size: 1255 550 83 981 17 153 185 445
Cuts at: 3994 325
Size: 1498
Fragments arranged by size:
1498 1255 981 550 445 185 153 83
17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3413 5125 96
Size: 274 80 33 51 1443 1436 1712 138
Fragments arranged by size:
1712 1443 1436 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5127 5159 5127
Size: 32 5135
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5167
XbaI T'CTAG_A
Cuts at: 2503 2503
Size: 5167
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5167
XmaI C'CCGG_G
Cuts at: 1870 2366 2492 1870
Size: 496 126 4545
Fragments arranged by size:
4545 496 126
XmnI GAAnn'nnTTC
Cuts at: 3296 3296
Size: 5167
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2975 276
Size: 53 83 186 936 1441 2468
Fragments arranged by size:
2468 1441 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NsiI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PsrI PstI PvuI
SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII
EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI PacI PfoI PmlI PpuMI PspOMI
PspXI PvuII RsrII SacI SacII SanDI SapI SexAI
SfiI SfoI SrfI SwaI XcmI