Restriction map for
pFN21AE0473
(Circular) (Six-base) MAPSORT of: pFN21AE0473.seq Check: 5296 from: 1 to: 5296
pFN21AE0473 5296 bp
With 182 enzymes: SgfI *
October 20, 2009 10:48 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3106 278
Size: 53 83 186 936 1570 2468
Fragments arranged by size:
2468 1570 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2639 1937
Size: 702 4594
Acc65I G'GTAC_C
Cuts at: 2617 2617
Size: 5296
AclI AA'CG_TT
Cuts at: 1563 3423 3796 1563
Size: 1860 373 3063
Fragments arranged by size:
3063 1860 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2334 2532 3359 4743 5011 1632
Size: 702 198 827 1384 268 1917
Fragments arranged by size:
1917 1384 827 702 268 198
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5099
AflIII A'CryG_T
Cuts at: 1203 4195 5172 1203
Size: 2992 977 1327
Fragments arranged by size:
2992 1327 977
AgeI A'CCGG_T
Cuts at: 4127 4127
Size: 5296
AhdI GACnn_n'nnGTC
Cuts at: 4025 4025
Size: 5296
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5296
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2496 2559 1184
Size: 1312 63 3921
Fragments arranged by size:
3921 1312 63
AlwNI CAG_nnn'CTG
Cuts at: 2072 2084 2096 3039 4611 2072
Size: 12 12 943 1572 2757
Fragments arranged by size:
2757 1572 943 12 12
ApaI G_GGCC'C
Cuts at: 2257 2257
Size: 5296
ApaLI G'TGCA_C
Cuts at: 3353 4509 3353
Size: 1156 4140
ApoI r'AATT_y
Cuts at: 1493 2605 2831 2983 5092 1493
Size: 1112 226 152 2109 1697
Fragments arranged by size:
2109 1697 1112 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3850 160
Size: 872 2818 1606
Fragments arranged by size:
2818 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5296
AvaI C'yCGr_G
Cuts at: 1870 1943 2621 1870
Size: 73 678 4545
Fragments arranged by size:
4545 678 73
BamHI G'GATC_C
Cuts at: 2626 2993 2626
Size: 367 4929
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2393 2617 4072 618
Size: 325 217 627 606 224 1455 1842
Fragments arranged by size:
1842 1455 627 606 325 224 217
BanII G_rGCy'C
Cuts at: 1391 2257 2615 1391
Size: 866 358 4072
Fragments arranged by size:
4072 866 358
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4325
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3487 3521 1903
Size: 34 1550 34 3678
Fragments arranged by size:
3678 1550 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3188 4398 3188
Size: 1210 4086
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5296
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3907 136
Size: 107 122 71 631 605 2235 1525
Fragments arranged by size:
2235 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5291 5291
Size: 5296
BlpI GC'TnA_GC
Cuts at: 2463 2713 2463
Size: 250 5046
Bme1580I G_kGCm'C
Cuts at: 1790 2257 2396 3357 4513 1790
Size: 467 139 961 1156 2573
Fragments arranged by size:
2573 1156 961 467 139
BmgBI CAC'GTC
Cuts at: 1318 2476 1318
Size: 1158 4138
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3027 3985 442
Size: 416 53 83 399 24 1610 958 1753
Fragments arranged by size:
1753 1610 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5296
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2037 2043 2049 2229 3956 1239
Size: 798 6 6 180 1727 2579
Fragments arranged by size:
2579 1727 798 180 6 6
Bpu10I CC'TnA_GC
Cuts at: 2022 2022
Size: 5296
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3421 4286 4584 3421
Size: 865 298 4133
Fragments arranged by size:
4133 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3959 882
Size: 617 2460 2219
Fragments arranged by size:
2460 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3087 493
Size: 711 1883 2702
Fragments arranged by size:
2702 1883 711
BsaBI GATnn'nnATC
Cuts at: 2219 5290 2219
Size: 3071 2225
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3103 3485 4120 275
Size: 53 83 186 936 1570 382 635 1451
Fragments arranged by size:
1570 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2196 3729 4127 4401 4548 4959 2196
Size: 1533 398 274 147 411 2533
Fragments arranged by size:
2533 1533 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2510 2540 1178
Size: 30 165 30 1107 30 3934
Fragments arranged by size:
3934 1107 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5296
BseYI C'CCAG_C
Cuts at: 2089 2296 2531 4499 4995 2089
Size: 207 235 1968 496 2390
Fragments arranged by size:
2390 1968 496 235 207
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2058 1163
Size: 573 322 4401
Fragments arranged by size:
4401 573 322
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2746 3507 4535 1540
Size: 275 186 745 761 1028 2301
Fragments arranged by size:
2301 1028 761 745 275 186
BsiHKAI G_wGCw'C
Cuts at: 3357 3442 4513 3357
Size: 85 1071 4140
Fragments arranged by size:
4140 1071 85
BsmI GAATG_Cn'
Cuts at: 2807 2900 2807
Size: 93 5203
BsmBI CGTCTCn'nnnn_
Cuts at: 2339 2339
Size: 5296
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2257 2396 2615 3357 3442 4513 1391
Size: 399 467 139 219 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 467 399 219 139 85
BspEI T'CCGG_A
Cuts at: 4959 4959
Size: 5296
BspHI T'CATG_A
Cuts at: 3185 4915 3185
Size: 1730 3566
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2122 2651 844
Size: 1278 529 3489
Fragments arranged by size:
3489 1278 529
BsrBI CCG'CTC
Cuts at: 1394 1823 3183 1394
Size: 429 1360 3507
Fragments arranged by size:
3507 1360 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2449 3791 3965 65
Size: 1183 1201 1342 174 1396
Fragments arranged by size:
1396 1342 1201 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3940 4127 1700
Size: 110 2130 187 2869
Fragments arranged by size:
2869 2130 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5296
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5296
BssSI C'ACGA_G
Cuts at: 3356 4368 3356
Size: 1012 4284
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5296
BstBI TT'CG_AA
Cuts at: 4100 4100
Size: 5296
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5296
BstYI r'GATC_y
Cuts at: 1972 2626 2993 3378 3395 4847 4933 4945 5291
Size: 654 367 385 17 1452 86 12 346
Cuts at: 5291 1972
Size: 1977
Fragments arranged by size:
1977 1452 654 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2097 2097
Size: 5296
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3805
Fragments arranged by size:
3805 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4557
Fragments arranged by size:
4557 683 56
BtsI GCAGTG_nn'
Cuts at: 2148 2812 3606 3626 2148
Size: 664 794 20 3818
Fragments arranged by size:
3818 794 664 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5296
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5261
DraI TTT'AAA
Cuts at: 2600 2600
Size: 5296
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4303 809
Size: 507 2987 1802
Fragments arranged by size:
2987 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2230 2743 3632
Size: 54 1425 50 275 18 400 513 889
Cuts at: 3632 5261 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 513 400 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2743 1537
Size: 275 931 4090
Fragments arranged by size:
4090 931 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2160 2310 3226 1353
Size: 807 150 916 3423
Fragments arranged by size:
3423 916 807 150
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3883 4257 4403 387
Size: 1064 138 2294 374 146 1280
Fragments arranged by size:
2294 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2037 2043 2049 2229 2334 2532 3359
Size: 393 405 6 6 180 105 198 827
Cuts at: 3359 3956 4743 5011 1239
Size: 597 787 268 1524
Fragments arranged by size:
1524 827 787 597 405 393 268 198
180 105 6 6
EcoO109I rG'GnC_Cy
Cuts at: 2254 2416 2254
Size: 162 5134
EcoRI G'AATT_C
Cuts at: 2605 2983 2605
Size: 378 4918
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2161 2161
Size: 5296
FspI TGC'GCA
Cuts at: 3802 3802
Size: 5296
HaeII r_GCGC'y
Cuts at: 1678 4443 1678
Size: 2765 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3937 3969 4011 4043 1373
Size: 32 135 32 2365 32 42 32 2626
Fragments arranged by size:
2626 2365 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2640 2886 669
Size: 988 281 702 246 3079
Fragments arranged by size:
3079 988 702 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5296
HpaI GTT'AAC
Cuts at: 2886 2886
Size: 5296
KpnI G_GTAC'C
Cuts at: 2621 2621
Size: 5296
MfeI C'AATT_G
Cuts at: 2895 2895
Size: 5296
MluI A'CGCG_T
Cuts at: 5172 5172
Size: 5296
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4410 4594 1305
Size: 3105 184 2007
Fragments arranged by size:
3105 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3474
Fragments arranged by size:
3474 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2453 3254 3613 3772 518
Size: 648 1287 801 359 159 2042
Fragments arranged by size:
2042 1287 801 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2524 2712 3389 4537 4782 1606
Size: 918 188 677 1148 245 2120
Fragments arranged by size:
2120 1148 918 677 245 188
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3805
Fragments arranged by size:
3805 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5296
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5296
NotI GC'GGCC_GC
Cuts at: 2743 2743
Size: 5296
NspI r_CATG'y
Cuts at: 1132 1229 2654 4199 1132
Size: 97 1425 1545 2229
Fragments arranged by size:
2229 1545 1425 97
PasI CC'CwG_GG
Cuts at: 1348 2257 2488 1348
Size: 909 231 4156
Fragments arranged by size:
4156 909 231
PciI A'CATG_T
Cuts at: 4195 4195
Size: 5296
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5296
PmeI GTTT'AAAC
Cuts at: 2600 2600
Size: 5296
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3365 3397 4878 4910 3365
Size: 32 1481 32 3751
Fragments arranged by size:
3751 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5296
PsiI TTA'TAA
Cuts at: 2866 2866
Size: 5296
PspOMI G'GGCC_C
Cuts at: 2253 2253
Size: 5296
PstI C_TGCA'G
Cuts at: 830 2367 2648 830
Size: 1537 281 3478
Fragments arranged by size:
3478 1537 281
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5296
PvuII CAG'CTG
Cuts at: 2524 2524
Size: 5296
SalI G'TCGA_C
Cuts at: 1936 2638 1936
Size: 702 4594
SbfI CC_TGCA'GG
Cuts at: 2648 2648
Size: 5296
ScaI AGT'ACT
Cuts at: 3544 5256 3544
Size: 1712 3584
SfcI C'TryA_G
Cuts at: 826 1045 2363 2644 3779 4460 4651 826
Size: 219 1318 281 1135 681 191 1471
Fragments arranged by size:
1471 1318 1135 681 281 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5296
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5296
SmaI CCC'GGG
Cuts at: 1872 2623 1872
Size: 751 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3400 4301 4563 820
Size: 197 926 1457 901 262 1553
Fragments arranged by size:
1553 1457 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3087 493
Size: 2594 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5296
SphI G_CATG'C
Cuts at: 1132 2654 1132
Size: 1522 3774
SspI AAT'ATT
Cuts at: 5 52 3220 5
Size: 47 3168 2081
Fragments arranged by size:
3168 2081 47
StuI AGG'CCT
Cuts at: 1517 2180 1517
Size: 663 4633
StyI C'CwwG_G
Cuts at: 513 1065 2004 2106 2735 513
Size: 552 939 102 629 3074
Fragments arranged by size:
3074 939 629 552 102
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2447 3323 3340 3493 3678 4123 325
Size: 1255 867 876 17 153 185 445 1498
Fragments arranged by size:
1498 1255 876 867 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2245 3542 5254
Size: 274 80 33 51 1443 268 1297 1712
Cuts at: 5254 96
Size: 138
Fragments arranged by size:
1712 1443 1297 274 268 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5256 5288 5256
Size: 32 5264
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5296
XbaI T'CTAG_A
Cuts at: 2632 2632
Size: 5296
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5296
XmaI C'CCGG_G
Cuts at: 1870 2621 1870
Size: 751 4545
XmnI GAAnn'nnTTC
Cuts at: 3425 3425
Size: 5296
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3104 276
Size: 53 83 186 936 1570 2468
Fragments arranged by size:
2468 1570 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI
BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI
EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI
PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI
SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI
StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI
XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI BsiWI BstXI BstZ17I DraIII EcoICRI EcoNI
EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PfoI PmlI PpuMI PspXI PsrI RsrII
SacI SacII SanDI SapI SexAI SfiI SfoI SrfI
SwaI XcmI