Restriction map for
pFN21AE0444
(Circular) (Six-base) MAPSORT of: pFN21AE0444.seq Check: 2165 from: 1 to: 5536
pFN21AE0444 5536 bp
With 182 enzymes: SgfI *
October 20, 2009 10:47 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3346 278
Size: 53 83 186 936 1810 2468
Fragments arranged by size:
2468 1810 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2879 1937
Size: 942 4594
Acc65I G'GTAC_C
Cuts at: 2857 2857
Size: 5536
AclI AA'CG_TT
Cuts at: 1563 3663 4036 1563
Size: 2100 373 3063
Fragments arranged by size:
3063 2100 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3599 4983 5251 1632
Size: 1967 1384 268 1917
Fragments arranged by size:
1967 1917 1384 268
AfeI AGC'GCT
Cuts at: 2280 2280
Size: 5536
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5339
AflIII A'CryG_T
Cuts at: 1203 4435 5412 1203
Size: 3232 977 1327
Fragments arranged by size:
3232 1327 977
AgeI A'CCGG_T
Cuts at: 4367 4367
Size: 5536
AhdI GACnn_n'nnGTC
Cuts at: 4265 4265
Size: 5536
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5536
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5536
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2690 2722 2690
Size: 32 5504
AlwNI CAG_nnn'CTG
Cuts at: 2741 3279 4851 2741
Size: 538 1572 3426
Fragments arranged by size:
3426 1572 538
ApaLI G'TGCA_C
Cuts at: 3593 4749 3593
Size: 1156 4380
ApoI r'AATT_y
Cuts at: 1493 2845 3071 3223 5332 1493
Size: 1352 226 152 2109 1697
Fragments arranged by size:
2109 1697 1352 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4090 160
Size: 872 3058 1606
Fragments arranged by size:
3058 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5536
AvaI C'yCGr_G
Cuts at: 1870 1943 2274 2861 1870
Size: 73 331 587 4545
Fragments arranged by size:
4545 587 331 73
BamHI G'GATC_C
Cuts at: 2866 3233 2866
Size: 367 5169
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2582 2857 4312 618
Size: 325 217 627 795 275 1455 1842
Fragments arranged by size:
1842 1455 795 627 325 275 217
BanII G_rGCy'C
Cuts at: 1391 2855 1391
Size: 1464 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2025 928
Size: 971 126 4439
Fragments arranged by size:
4439 971 126
BbvCI CC'TCA_GC
Cuts at: 2346 2346
Size: 5536
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3727 3761 1903
Size: 34 1790 34 3678
Fragments arranged by size:
3678 1790 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3428 4638 3428
Size: 1210 4326
BclI T'GATC_A
Cuts at: 1548 2104 1548
Size: 556 4980
BfrBI ATG'CAT
Cuts at: 2072 2072
Size: 5536
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4147 136
Size: 107 122 71 631 605 2475 1525
Fragments arranged by size:
2475 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5531 5531
Size: 5536
BlpI GC'TnA_GC
Cuts at: 2953 2953
Size: 5536
Bme1580I G_kGCm'C
Cuts at: 1790 3597 4753 1790
Size: 1807 1156 2573
Fragments arranged by size:
2573 1807 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5536
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3267 4225 442
Size: 416 53 83 399 24 1850 958 1753
Fragments arranged by size:
1850 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5536
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2452 2452
Size: 5536
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 4196 1239
Size: 2957 2579
Bpu10I CC'TnA_GC
Cuts at: 2346 2346
Size: 5536
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3661 4526 4824 3661
Size: 865 298 4373
Fragments arranged by size:
4373 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4199 882
Size: 617 2700 2219
Fragments arranged by size:
2700 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3327 493
Size: 711 2123 2702
Fragments arranged by size:
2702 2123 711
BsaBI GATnn'nnATC
Cuts at: 5530 5530
Size: 5536
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3343 3725 4360 275
Size: 53 83 186 936 1810 382 635 1451
Fragments arranged by size:
1810 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3969 4367 4641 4788 5199 3969
Size: 398 274 147 411 4306
Fragments arranged by size:
4306 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2255 2285 1178
Size: 30 165 30 852 30 4429
Fragments arranged by size:
4429 852 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5536
BseYI C'CCAG_C
Cuts at: 2747 4739 5235 2747
Size: 1992 496 3048
Fragments arranged by size:
3048 1992 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4963
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2986 3747 4775 1540
Size: 275 186 985 761 1028 2301
Fragments arranged by size:
2301 1028 985 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3597 3682 4753 3597
Size: 85 1071 4380
Fragments arranged by size:
4380 1071 85
BsmI GAATG_Cn'
Cuts at: 3047 3140 3047
Size: 93 5443
BsmBI CGTCTCn'nnnn_
Cuts at: 2321 2321
Size: 5536
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2855 3597 3682 4753 1391
Size: 399 1065 742 85 1071 2174
Fragments arranged by size:
2174 1071 1065 742 399 85
BspEI T'CCGG_A
Cuts at: 5199 5199
Size: 5536
BspHI T'CATG_A
Cuts at: 3425 5155 3425
Size: 1730 3806
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2891 844
Size: 2047 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3423 1394
Size: 429 1600 3507
Fragments arranged by size:
3507 1600 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 4031 4205 65
Size: 1183 2783 174 1396
Fragments arranged by size:
2783 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4180 4367 1700
Size: 110 2370 187 2869
Fragments arranged by size:
2869 2370 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5536
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5536
BssSI C'ACGA_G
Cuts at: 3596 4608 3596
Size: 1012 4524
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5536
BstBI TT'CG_AA
Cuts at: 2674 4340 2674
Size: 1666 3870
BstEII G'GTnAC_C
Cuts at: 1184 2431 1184
Size: 1247 4289
BstYI r'GATC_y
Cuts at: 1972 2866 3233 3618 3635 5087 5173 5185 5531
Size: 894 367 385 17 1452 86 12 346
Cuts at: 5531 1972
Size: 1977
Fragments arranged by size:
1977 1452 894 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2546 2546
Size: 5536
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4984
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2700 487
Size: 683 56 1474 3323
Fragments arranged by size:
3323 1474 683 56
BtsI GCAGTG_nn'
Cuts at: 2079 2122 3052 3846 3866 2079
Size: 43 930 794 20 3749
Fragments arranged by size:
3749 930 794 43 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5536
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5501
DraI TTT'AAA
Cuts at: 2840 2840
Size: 5536
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4543 809
Size: 507 3227 1802
Fragments arranged by size:
3227 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2983 3872 5501
Size: 54 1425 50 275 18 1153 889 1629
Cuts at: 5501 8
Size: 43
Fragments arranged by size:
1629 1425 1153 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2983 1537
Size: 275 1171 4090
Fragments arranged by size:
4090 1171 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3466 1353
Size: 2113 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4123 4497 4643 387
Size: 1064 138 2534 374 146 1280
Fragments arranged by size:
2534 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3599 4196 4983 5251 1239
Size: 393 1967 597 787 268 1524
Fragments arranged by size:
1967 1524 787 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2814 2814
Size: 5536
EcoRI G'AATT_C
Cuts at: 2845 3223 2845
Size: 378 5158
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2603 2603
Size: 5536
FspI TGC'GCA
Cuts at: 4042 4042
Size: 5536
HaeII r_GCGC'y
Cuts at: 1678 2282 4683 1678
Size: 604 2401 2531
Fragments arranged by size:
2531 2401 604
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2238 2255 2270 2287 2365
Size: 32 135 32 666 17 15 17 78
Cuts at: 2365 2397 4177 4209 4251 4283 1373
Size: 32 1780 32 42 32 2626
Fragments arranged by size:
2626 1780 666 135 78 42 32 32
32 32 32 17 17 15
HincII GTy'rAC
Cuts at: 669 1657 1938 2880 3126 669
Size: 988 281 942 246 3079
Fragments arranged by size:
3079 988 942 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5536
HpaI GTT'AAC
Cuts at: 3126 3126
Size: 5536
KpnI G_GTAC'C
Cuts at: 2861 2861
Size: 5536
MfeI C'AATT_G
Cuts at: 3135 3135
Size: 5536
MluI A'CGCG_T
Cuts at: 5412 5412
Size: 5536
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2241 4650 4834 1305
Size: 936 2409 184 2007
Fragments arranged by size:
2409 2007 936 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3714
Fragments arranged by size:
3714 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2115 3494 3853 4012 518
Size: 648 949 1379 359 159 2042
Fragments arranged by size:
2042 1379 949 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2952 3629 4777 5022 1606
Size: 1346 677 1148 245 2120
Fragments arranged by size:
2120 1346 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4984
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5536
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5536
NotI GC'GGCC_GC
Cuts at: 2983 2983
Size: 5536
NsiI A_TGCA'T
Cuts at: 2074 2074
Size: 5536
NspI r_CATG'y
Cuts at: 1132 1229 2026 2894 4439 1132
Size: 97 797 868 1545 2229
Fragments arranged by size:
2229 1545 868 797 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5536
PciI A'CATG_T
Cuts at: 4435 4435
Size: 5536
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5536
PmeI GTTT'AAAC
Cuts at: 2840 2840
Size: 5536
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3605 3637 5118 5150 3605
Size: 32 1481 32 3991
Fragments arranged by size:
3991 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5536
PsiI TTA'TAA
Cuts at: 3106 3106
Size: 5536
PstI C_TGCA'G
Cuts at: 830 2888 830
Size: 2058 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5536
SalI G'TCGA_C
Cuts at: 1936 2878 1936
Size: 942 4594
SbfI CC_TGCA'GG
Cuts at: 2888 2888
Size: 5536
ScaI AGT'ACT
Cuts at: 2451 3784 5496 2451
Size: 1333 1712 2491
Fragments arranged by size:
2491 1712 1333
SfcI C'TryA_G
Cuts at: 826 1045 2884 4019 4700 4891 826
Size: 219 1839 1135 681 191 1471
Fragments arranged by size:
1839 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5536
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5536
SmaI CCC'GGG
Cuts at: 1872 2863 1872
Size: 991 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3640 4541 4803 820
Size: 197 926 1697 901 262 1553
Fragments arranged by size:
1697 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3327 493
Size: 2834 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5536
SphI G_CATG'C
Cuts at: 1132 2894 1132
Size: 1762 3774
SspI AAT'ATT
Cuts at: 5 52 3460 5
Size: 47 3408 2081
Fragments arranged by size:
3408 2081 47
StuI AGG'CCT
Cuts at: 1517 2532 1517
Size: 1015 4521
StyI C'CwwG_G
Cuts at: 513 1065 2527 2975 513
Size: 552 1462 448 3074
Fragments arranged by size:
3074 1462 552 448
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3563 3580 3733 3918 4363 325
Size: 1255 1983 17 153 185 445 1498
Fragments arranged by size:
1983 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2449 3782 5494
Size: 274 80 33 51 1443 472 1333 1712
Cuts at: 5494 96
Size: 138
Fragments arranged by size:
1712 1443 1333 472 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5496 5528 5496
Size: 32 5504
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5536
XbaI T'CTAG_A
Cuts at: 2872 2872
Size: 5536
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2653 2653
Size: 5536
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5536
XmaI C'CCGG_G
Cuts at: 1870 2861 1870
Size: 991 4545
XmnI GAAnn'nnTTC
Cuts at: 2471 3665 2471
Size: 1194 4342
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3344 276
Size: 53 83 186 936 1810 2468
Fragments arranged by size:
2468 1810 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AfeI AflII AflIII
AgeI AhdI AleI AlfI AloI AlwNI ApaLI ApoI
AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI
BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I
BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI
BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI
BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI
BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI
BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI
DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I
EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NsiI NspI PasI PciI PflMI
PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI
ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI ApaI AscI AvrII BaeI BbeI BsiWI BstXI
BstZ17I DraIII EcoICRI EcoNI EcoRV FseI FspAI KasI
NaeI NarI NgoMIV NruI PacI PfoI PmlI PpuMI
PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI
SapI SexAI SfiI SfoI SrfI SwaI