Restriction map for
pFN21AE0285
(Circular) (Six-base) MAPSORT of: pFN21AE0285.seq Check: 19 from: 1 to: 5368
pFN21AE0285 5368 bp
With 182 enzymes: SgfI *
October 20, 2009 10:46 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2247 3178 278
Size: 53 83 186 936 711 931 2468
Fragments arranged by size:
2468 936 931 711 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2161 2711 1937
Size: 224 550 4594
Fragments arranged by size:
4594 550 224
Acc65I G'GTAC_C
Cuts at: 2689 2689
Size: 5368
AclI AA'CG_TT
Cuts at: 1563 3495 3868 1563
Size: 1932 373 3063
Fragments arranged by size:
3063 1932 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2102 3431 4815 5083 1632
Size: 470 1329 1384 268 1917
Fragments arranged by size:
1917 1384 1329 470 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5171
AflIII A'CryG_T
Cuts at: 1203 4267 5244 1203
Size: 3064 977 1327
Fragments arranged by size:
3064 1327 977
AgeI A'CCGG_T
Cuts at: 4199 4199
Size: 5368
AhdI GACnn_n'nnGTC
Cuts at: 4097 4097
Size: 5368
AleI CACnn'nnGTG
Cuts at: 1166 2069 1166
Size: 903 4465
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5368
AlwNI CAG_nnn'CTG
Cuts at: 3111 4683 3111
Size: 1572 3796
ApaI G_GGCC'C
Cuts at: 2661 2661
Size: 5368
ApaLI G'TGCA_C
Cuts at: 3425 4581 3425
Size: 1156 4212
ApoI r'AATT_y
Cuts at: 1493 2677 2903 3055 5164 1493
Size: 1184 226 152 2109 1697
Fragments arranged by size:
2109 1697 1184 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3922 160
Size: 872 2890 1606
Fragments arranged by size:
2890 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5368
AvaI C'yCGr_G
Cuts at: 1870 1943 2693 1870
Size: 73 750 4545
Fragments arranged by size:
4545 750 73
BamHI G'GATC_C
Cuts at: 2117 2698 3065 2117
Size: 581 367 4420
Fragments arranged by size:
4420 581 367
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2689 4144 618
Size: 325 217 627 902 1455 1842
Fragments arranged by size:
1842 1455 902 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2661 2687 1391
Size: 1270 26 4072
Fragments arranged by size:
4072 1270 26
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2090 2357 928
Size: 971 191 267 3939
Fragments arranged by size:
3939 971 267 191
BbvCI CC'TCA_GC
Cuts at: 2174 2174
Size: 5368
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 1987 2021 3559 3593 1903
Size: 34 50 34 1538 34 3678
Fragments arranged by size:
3678 1538 50 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2512 3260 4470 2512
Size: 748 1210 3410
Fragments arranged by size:
3410 1210 748
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5368
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3979 136
Size: 107 122 71 631 605 2307 1525
Fragments arranged by size:
2307 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5363 5363
Size: 5368
BlpI GC'TnA_GC
Cuts at: 2785 2785
Size: 5368
Bme1580I G_kGCm'C
Cuts at: 1790 2661 3429 4585 1790
Size: 871 768 1156 2573
Fragments arranged by size:
2573 1156 871 768
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5368
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2470 2645 3099
Size: 416 53 83 399 24 1053 175 454
Cuts at: 3099 4057 442
Size: 958 1753
Fragments arranged by size:
1753 1053 958 454 416 399 175 83
53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5368
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2164 4028 1239
Size: 925 1864 2579
Fragments arranged by size:
2579 1864 925
Bpu10I CC'TnA_GC
Cuts at: 2174 2174
Size: 5368
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2532 3493 4358 4656 2532
Size: 961 865 298 3244
Fragments arranged by size:
3244 961 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2103 4031 882
Size: 617 604 1928 2219
Fragments arranged by size:
2219 1928 617 604
BsaAI yAC'GTr
Cuts at: 493 1204 3159 493
Size: 711 1955 2702
Fragments arranged by size:
2702 1955 711
BsaBI GATnn'nnATC
Cuts at: 5362 5362
Size: 5368
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2244 3175 3557 4192
Size: 53 83 186 936 711 931 382 635
Cuts at: 4192 275
Size: 1451
Fragments arranged by size:
1451 936 931 711 635 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3801 4199 4473 4620 5031 3801
Size: 398 274 147 411 4138
Fragments arranged by size:
4138 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5143
Fragments arranged by size:
5143 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2015 1186
Size: 829 4539
BseYI C'CCAG_C
Cuts at: 2041 4571 5067 2041
Size: 2530 496 2342
Fragments arranged by size:
2530 2342 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4795
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2818 3579 4607 1540
Size: 275 186 817 761 1028 2301
Fragments arranged by size:
2301 1028 817 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2548 3429 3514 4585 2548
Size: 881 85 1071 3331
Fragments arranged by size:
3331 1071 881 85
BsmI GAATG_Cn'
Cuts at: 2879 2972 2879
Size: 93 5275
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2548 2661 2687 3429 3514 4585 1391
Size: 399 758 113 26 742 85 1071 2174
Fragments arranged by size:
2174 1071 758 742 399 113 85 26
BspEI T'CCGG_A
Cuts at: 5031 5031
Size: 5368
BspHI T'CATG_A
Cuts at: 2326 3257 4987 2326
Size: 931 1730 2707
Fragments arranged by size:
2707 1730 931
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2723 844
Size: 1879 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3255 1394
Size: 429 1432 3507
Fragments arranged by size:
3507 1432 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3863 4037 65
Size: 1183 2615 174 1396
Fragments arranged by size:
2615 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4012 4199 1700
Size: 110 2202 187 2869
Fragments arranged by size:
2869 2202 187 110
BsrGI T'GTAC_A
Cuts at: 96 2128 96
Size: 2032 3336
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5368
BssSI C'ACGA_G
Cuts at: 3428 4440 3428
Size: 1012 4356
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2392 794
Size: 1598 3770
BstBI TT'CG_AA
Cuts at: 4172 4172
Size: 5368
BstEII G'GTnAC_C
Cuts at: 1184 2615 1184
Size: 1431 3937
BstYI r'GATC_y
Cuts at: 1972 2117 2698 3065 3450 3467 4919 5005 5017
Size: 145 581 367 385 17 1452 86 12
Cuts at: 5017 5363 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 581 385 367 346 145 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2121 513
Size: 552 1056 3760
Fragments arranged by size:
3760 1056 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4629
Fragments arranged by size:
4629 683 56
BtsI GCAGTG_nn'
Cuts at: 2884 3678 3698 2884
Size: 794 20 4554
Fragments arranged by size:
4554 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5368
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5333
DraI TTT'AAA
Cuts at: 2672 2672
Size: 5368
DraIII CAC_nnn'GTG
Cuts at: 2653 2653
Size: 5368
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4375 809
Size: 507 3059 1802
Fragments arranged by size:
3059 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2815 3704 5333
Size: 54 1425 50 275 18 985 889 1629
Cuts at: 5333 8
Size: 43
Fragments arranged by size:
1629 1425 985 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2815 1537
Size: 275 1003 4090
Fragments arranged by size:
4090 1003 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3298 1353
Size: 1945 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3955 4329 4475 387
Size: 1064 138 2366 374 146 1280
Fragments arranged by size:
2366 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2102 2164 3431 4028 4815 5083 1239
Size: 393 470 62 1267 597 787 268 1524
Fragments arranged by size:
1524 1267 787 597 470 393 268 62
EcoO109I rG'GnC_Cy
Cuts at: 2657 2658 2657
Size: 1 5367
EcoRI G'AATT_C
Cuts at: 2677 3055 2677
Size: 378 4990
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2107 2226 2107
Size: 119 5249
FspI TGC'GCA
Cuts at: 2385 3874 2385
Size: 1489 3879
HaeII r_GCGC'y
Cuts at: 1678 4515 1678
Size: 2837 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2274 2306 4009 4041 4083
Size: 32 135 32 702 32 1703 32 42
Cuts at: 4083 4115 1373
Size: 32 2626
Fragments arranged by size:
2626 1703 702 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2712 2958 669
Size: 988 281 774 246 3079
Fragments arranged by size:
3079 988 774 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5368
HpaI GTT'AAC
Cuts at: 2958 2958
Size: 5368
KpnI G_GTAC'C
Cuts at: 2693 2693
Size: 5368
MfeI C'AATT_G
Cuts at: 2967 2967
Size: 5368
MluI A'CGCG_T
Cuts at: 5244 5244
Size: 5368
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2175 4482 4666 1305
Size: 870 2307 184 2007
Fragments arranged by size:
2307 2007 870 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3546
Fragments arranged by size:
3546 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2069 2186 3326 3685 3844 518
Size: 648 903 117 1140 359 159 2042
Fragments arranged by size:
2042 1140 903 648 359 159 117
MspA1I CmG'CkG
Cuts at: 1606 2784 3461 4609 4854 1606
Size: 1178 677 1148 245 2120
Fragments arranged by size:
2120 1178 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2121 513
Size: 552 1056 3760
Fragments arranged by size:
3760 1056 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5368
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5368
NotI GC'GGCC_GC
Cuts at: 2815 2815
Size: 5368
NspI r_CATG'y
Cuts at: 1132 1229 2267 2726 4271 1132
Size: 97 1038 459 1545 2229
Fragments arranged by size:
2229 1545 1038 459 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5368
PciI A'CATG_T
Cuts at: 4267 4267
Size: 5368
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2653 1108
Size: 1545 3823
PmeI GTTT'AAAC
Cuts at: 2672 2672
Size: 5368
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3437 3469 4950 4982 3437
Size: 32 1481 32 3823
Fragments arranged by size:
3823 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5368
PsiI TTA'TAA
Cuts at: 2938 2938
Size: 5368
PspOMI G'GGCC_C
Cuts at: 2657 2657
Size: 5368
PstI C_TGCA'G
Cuts at: 830 2559 2720 830
Size: 1729 161 3478
Fragments arranged by size:
3478 1729 161
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5368
SalI G'TCGA_C
Cuts at: 1936 2710 1936
Size: 774 4594
SbfI CC_TGCA'GG
Cuts at: 2720 2720
Size: 5368
ScaI AGT'ACT
Cuts at: 3616 5328 3616
Size: 1712 3656
SfcI C'TryA_G
Cuts at: 826 1045 2534 2555 2587 2716 3851 4532 4723
Size: 219 1489 21 32 129 1135 681 191
Cuts at: 4723 826
Size: 1471
Fragments arranged by size:
1489 1471 1135 681 219 191 129 32
21
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5368
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5368
SmaI CCC'GGG
Cuts at: 1872 2695 1872
Size: 823 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2547 3472 4373 4635 820
Size: 197 926 604 925 901 262 1553
Fragments arranged by size:
1553 926 925 901 604 262 197
SnaBI TAC'GTA
Cuts at: 493 3159 493
Size: 2666 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5368
SphI G_CATG'C
Cuts at: 1132 2726 1132
Size: 1594 3774
SspI AAT'ATT
Cuts at: 5 52 3292 5
Size: 47 3240 2081
Fragments arranged by size:
3240 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5368
StyI C'CwwG_G
Cuts at: 513 1065 2121 2807 513
Size: 552 1056 686 3074
Fragments arranged by size:
3074 1056 686 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2664 3395 3412 3565 3750 4195 325
Size: 1255 1084 731 17 153 185 445 1498
Fragments arranged by size:
1498 1255 1084 731 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2128 3614 5326
Size: 274 80 33 51 1443 151 1486 1712
Cuts at: 5326 96
Size: 138
Fragments arranged by size:
1712 1486 1443 274 151 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5328 5360 5328
Size: 32 5336
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5368
XbaI T'CTAG_A
Cuts at: 2704 2704
Size: 5368
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5368
XmaI C'CCGG_G
Cuts at: 1870 2693 1870
Size: 823 4545
XmnI GAAnn'nnTTC
Cuts at: 3497 3497
Size: 5368
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2245 3176 276
Size: 53 83 186 936 711 931 2468
Fragments arranged by size:
2468 936 931 711 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI
EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI
PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI
SmaI SmlI SnaBI SpeI SphI SspI StuI StyI
TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BfrBI
BplI BsiWI BsmBI BstXI BstZ17I Bsu36I EcoICRI EcoNI
EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PfoI PmlI PpuMI PspXI PsrI PvuII
RsrII SacI SacII SanDI SapI SexAI SfiI SfoI
SrfI SwaI XcmI