Restriction map for
pFN21AE0252
(Circular) (Six-base) MAPSORT of: pFN21AE0252.seq Check: 8048 from: 1 to: 5356
pFN21AE0252 5356 bp
With 182 enzymes: SgfI *
October 20, 2009 10:46 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3166 278
Size: 53 83 186 936 1630 2468
Fragments arranged by size:
2468 1630 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2699 1937
Size: 762 4594
Acc65I G'GTAC_C
Cuts at: 2677 2677
Size: 5356
AclI AA'CG_TT
Cuts at: 1563 3483 3856 1563
Size: 1920 373 3063
Fragments arranged by size:
3063 1920 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2156 3419 4803 5071 1632
Size: 524 1263 1384 268 1917
Fragments arranged by size:
1917 1384 1263 524 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5159
AflIII A'CryG_T
Cuts at: 1203 2329 4255 5232 1203
Size: 1126 1926 977 1327
Fragments arranged by size:
1926 1327 1126 977
AgeI A'CCGG_T
Cuts at: 4187 4187
Size: 5356
AhdI GACnn_n'nnGTC
Cuts at: 4085 4085
Size: 5356
AleI CACnn'nnGTG
Cuts at: 1166 2098 1166
Size: 932 4424
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5356
AlwNI CAG_nnn'CTG
Cuts at: 2023 3099 4671 2023
Size: 1076 1572 2708
Fragments arranged by size:
2708 1572 1076
ApaLI G'TGCA_C
Cuts at: 3413 4569 3413
Size: 1156 4200
ApoI r'AATT_y
Cuts at: 1493 2665 2891 3043 5152 1493
Size: 1172 226 152 2109 1697
Fragments arranged by size:
2109 1697 1172 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3910 160
Size: 872 2878 1606
Fragments arranged by size:
2878 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5356
AvaI C'yCGr_G
Cuts at: 1870 1943 2681 1870
Size: 73 738 4545
Fragments arranged by size:
4545 738 73
BamHI G'GATC_C
Cuts at: 2686 3053 2686
Size: 367 4989
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2026 2100 2677 4132 618
Size: 325 217 627 239 74 577 1455 1842
Fragments arranged by size:
1842 1455 627 577 325 239 217 74
BanII G_rGCy'C
Cuts at: 1391 2675 1391
Size: 1284 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4385
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3547 3581 1903
Size: 34 1610 34 3678
Fragments arranged by size:
3678 1610 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3248 4458 3248
Size: 1210 4146
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5356
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3967 136
Size: 107 122 71 631 605 2295 1525
Fragments arranged by size:
2295 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5351 5351
Size: 5356
BlpI GC'TnA_GC
Cuts at: 2773 2773
Size: 5356
Bme1580I G_kGCm'C
Cuts at: 1790 2031 2105 3417 4573 1790
Size: 241 74 1312 1156 2573
Fragments arranged by size:
2573 1312 1156 241 74
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5356
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2521 3087 4045
Size: 416 53 83 399 24 1104 566 958
Cuts at: 4045 442
Size: 1753
Fragments arranged by size:
1753 1104 958 566 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5356
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2564 4016 1239
Size: 1325 1452 2579
Fragments arranged by size:
2579 1452 1325
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3481 4346 4644 3481
Size: 865 298 4193
Fragments arranged by size:
4193 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4019 882
Size: 617 2520 2219
Fragments arranged by size:
2520 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3147 493
Size: 711 1943 2702
Fragments arranged by size:
2702 1943 711
BsaBI GATnn'nnATC
Cuts at: 5350 5350
Size: 5356
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3163 3545 4180 275
Size: 53 83 186 936 1630 382 635 1451
Fragments arranged by size:
1630 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3789 4187 4461 4608 5019 3789
Size: 398 274 147 411 4126
Fragments arranged by size:
4126 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5131
Fragments arranged by size:
5131 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5356
BseYI C'CCAG_C
Cuts at: 4559 5055 4559
Size: 496 4860
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2036 1163
Size: 573 300 4483
Fragments arranged by size:
4483 573 300
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2806 3567 4595 1540
Size: 275 186 805 761 1028 2301
Fragments arranged by size:
2301 1028 805 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3417 3502 4573 3417
Size: 85 1071 4200
Fragments arranged by size:
4200 1071 85
BsmI GAATG_Cn'
Cuts at: 2867 2960 2867
Size: 93 5263
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2031 2105 2675 3417 3502 4573 1391
Size: 399 241 74 570 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 570 399 241 85 74
BspEI T'CCGG_A
Cuts at: 5019 5019
Size: 5356
BspHI T'CATG_A
Cuts at: 3245 4975 3245
Size: 1730 3626
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2435 2711 844
Size: 1591 276 3489
Fragments arranged by size:
3489 1591 276
BsrBI CCG'CTC
Cuts at: 1394 1823 3243 1394
Size: 429 1420 3507
Fragments arranged by size:
3507 1420 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2391 3851 4025 65
Size: 1183 1143 1460 174 1396
Fragments arranged by size:
1460 1396 1183 1143 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4000 4187 1700
Size: 110 2190 187 2869
Fragments arranged by size:
2869 2190 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5356
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5356
BssSI C'ACGA_G
Cuts at: 3416 4428 3416
Size: 1012 4344
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5356
BstBI TT'CG_AA
Cuts at: 4160 4160
Size: 5356
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5356
BstXI CCAn_nnnn'nTGG
Cuts at: 2524 2524
Size: 5356
BstYI r'GATC_y
Cuts at: 1972 2358 2416 2686 3053 3438 3455 4907 4993
Size: 386 58 270 367 385 17 1452 86
Cuts at: 4993 5005 5351 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 386 385 367 346 270 86
58 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3865
Fragments arranged by size:
3865 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4617
Fragments arranged by size:
4617 683 56
BtsI GCAGTG_nn'
Cuts at: 2482 2573 2872 3666 3686 2482
Size: 91 299 794 20 4152
Fragments arranged by size:
4152 794 299 91 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5356
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5321
DraI TTT'AAA
Cuts at: 2660 2660
Size: 5356
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4363 809
Size: 507 3047 1802
Fragments arranged by size:
3047 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2266 2803 3692
Size: 54 1425 50 275 18 436 537 889
Cuts at: 3692 5321 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 537 436 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2803 1537
Size: 275 991 4090
Fragments arranged by size:
4090 991 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3286 1353
Size: 1933 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3943 4317 4463 387
Size: 1064 138 2354 374 146 1280
Fragments arranged by size:
2354 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2156 2564 3419 4016 4803 5071 1239
Size: 393 524 408 855 597 787 268 1524
Fragments arranged by size:
1524 855 787 597 524 408 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2077 2077
Size: 5356
EcoRI G'AATT_C
Cuts at: 2665 3043 2665
Size: 378 4978
FspI TGC'GCA
Cuts at: 3862 3862
Size: 5356
HaeII r_GCGC'y
Cuts at: 1678 2024 4503 1678
Size: 346 2479 2531
Fragments arranged by size:
2531 2479 346
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3997 4029 4071 4103 1373
Size: 32 135 32 2425 32 42 32 2626
Fragments arranged by size:
2626 2425 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2700 2946 669
Size: 988 281 762 246 3079
Fragments arranged by size:
3079 988 762 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5356
HpaI GTT'AAC
Cuts at: 2946 2946
Size: 5356
KpnI G_GTAC'C
Cuts at: 2681 2681
Size: 5356
MfeI C'AATT_G
Cuts at: 2955 2955
Size: 5356
MluI A'CGCG_T
Cuts at: 5232 5232
Size: 5356
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4470 4654 1305
Size: 3165 184 2007
Fragments arranged by size:
3165 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3534
Fragments arranged by size:
3534 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2098 2628 3314 3673 3832 518
Size: 648 932 530 686 359 159 2042
Fragments arranged by size:
2042 932 686 648 530 359 159
MspA1I CmG'CkG
Cuts at: 1606 2772 3449 4597 4842 1606
Size: 1166 677 1148 245 2120
Fragments arranged by size:
2120 1166 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3865
Fragments arranged by size:
3865 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5356
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5356
NotI GC'GGCC_GC
Cuts at: 2803 2803
Size: 5356
NspI r_CATG'y
Cuts at: 1132 1229 2479 2714 4259 1132
Size: 97 1250 235 1545 2229
Fragments arranged by size:
2229 1545 1250 235 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5356
PciI A'CATG_T
Cuts at: 4255 4255
Size: 5356
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2275 1108
Size: 1167 4189
PfoI T'CCnGG_A
Cuts at: 2354 2354
Size: 5356
PmeI GTTT'AAAC
Cuts at: 2660 2660
Size: 5356
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3425 3457 4938 4970 3425
Size: 32 1481 32 3811
Fragments arranged by size:
3811 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2077 2077
Size: 5356
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5356
PsiI TTA'TAA
Cuts at: 2168 2926 2168
Size: 758 4598
PstI C_TGCA'G
Cuts at: 830 2708 830
Size: 1878 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5356
SalI G'TCGA_C
Cuts at: 1936 2698 1936
Size: 762 4594
SanDI GG'GwC_CC
Cuts at: 2077 2077
Size: 5356
SbfI CC_TGCA'GG
Cuts at: 2708 2708
Size: 5356
ScaI AGT'ACT
Cuts at: 3604 5316 3604
Size: 1712 3644
SfcI C'TryA_G
Cuts at: 826 1045 2176 2704 3839 4520 4711 826
Size: 219 1131 528 1135 681 191 1471
Fragments arranged by size:
1471 1135 1131 681 528 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5356
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5356
SmaI CCC'GGG
Cuts at: 1872 2683 1872
Size: 811 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3460 4361 4623 820
Size: 197 926 1517 901 262 1553
Fragments arranged by size:
1553 1517 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3147 493
Size: 2654 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5356
SphI G_CATG'C
Cuts at: 1132 2714 1132
Size: 1582 3774
SspI AAT'ATT
Cuts at: 5 52 2561 3280 5
Size: 47 2509 719 2081
Fragments arranged by size:
2509 2081 719 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5356
StyI C'CwwG_G
Cuts at: 513 1065 2004 2141 2274 2795 513
Size: 552 939 137 133 521 3074
Fragments arranged by size:
3074 939 552 521 137 133
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2241 2246 3383 3400 3553 3738 4183
Size: 1255 661 5 1137 17 153 185 445
Cuts at: 4183 325
Size: 1498
Fragments arranged by size:
1498 1255 1137 661 445 185 153 17
5
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3602 5314 96
Size: 274 80 33 51 1443 1625 1712 138
Fragments arranged by size:
1712 1625 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5316 5348 5316
Size: 32 5324
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5356
XbaI T'CTAG_A
Cuts at: 2692 2692
Size: 5356
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2062 2062
Size: 5356
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5356
XmaI C'CCGG_G
Cuts at: 1870 2681 1870
Size: 811 4545
XmnI GAAnn'nnTTC
Cuts at: 3485 3485
Size: 5356
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3164 276
Size: 53 83 186 936 1630 2468
Fragments arranged by size:
2468 1630 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI
EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PfoI
PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI
SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I
DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI
PspXI PsrI PvuII RsrII SacI SacII SapI SexAI
SfiI SfoI SrfI SwaI