Restriction map for
pFN21AE0245
(Circular) (Six-base) MAPSORT of: pFN21AE0245.seq Check: 7509 from: 1 to: 5425
pFN21AE0245 5425 bp
With 182 enzymes: SgfI *
October 20, 2009 10:46 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3235 278
Size: 53 83 186 936 1699 2468
Fragments arranged by size:
2468 1699 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2768 1937
Size: 831 4594
Acc65I G'GTAC_C
Cuts at: 2693 2746 2693
Size: 53 5372
AclI AA'CG_TT
Cuts at: 1563 3552 3925 1563
Size: 1989 373 3063
Fragments arranged by size:
3063 1989 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3488 4872 5140 1632
Size: 1856 1384 268 1917
Fragments arranged by size:
1917 1856 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5228
AflIII A'CryG_T
Cuts at: 1203 4324 5301 1203
Size: 3121 977 1327
Fragments arranged by size:
3121 1327 977
AgeI A'CCGG_T
Cuts at: 4256 4256
Size: 5425
AhdI GACnn_n'nnGTC
Cuts at: 4154 4154
Size: 5425
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5425
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5425
AlwNI CAG_nnn'CTG
Cuts at: 3168 4740 3168
Size: 1572 3853
ApaI G_GGCC'C
Cuts at: 2401 2401
Size: 5425
ApaLI G'TGCA_C
Cuts at: 3482 4638 3482
Size: 1156 4269
ApoI r'AATT_y
Cuts at: 1493 2734 2960 3112 5221 1493
Size: 1241 226 152 2109 1697
Fragments arranged by size:
2109 1697 1241 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3979 160
Size: 872 2947 1606
Fragments arranged by size:
2947 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5425
AvaI C'yCGr_G
Cuts at: 1870 1943 2112 2525 2586 2750 1870
Size: 73 169 413 61 164 4545
Fragments arranged by size:
4545 413 169 164 73 61
BamHI G'GATC_C
Cuts at: 2755 3122 2755
Size: 367 5058
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2693 2746 4201 618
Size: 325 217 627 906 53 1455 1842
Fragments arranged by size:
1842 1455 906 627 325 217 53
BanII G_rGCy'C
Cuts at: 1391 2401 2744 1391
Size: 1010 343 4072
Fragments arranged by size:
4072 1010 343
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4454
BbvCI CC'TCA_GC
Cuts at: 2381 2381
Size: 5425
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3616 3650 1903
Size: 34 1679 34 3678
Fragments arranged by size:
3678 1679 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3317 4527 3317
Size: 1210 4215
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5425
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2156 2472 4036
Size: 107 122 71 631 605 484 316 1564
Cuts at: 4036 136
Size: 1525
Fragments arranged by size:
1564 1525 631 605 484 316 122 107
71
BglII A'GATC_T
Cuts at: 5420 5420
Size: 5425
BlpI GC'TnA_GC
Cuts at: 2842 2842
Size: 5425
Bme1580I G_kGCm'C
Cuts at: 1790 2401 3486 4642 1790
Size: 611 1085 1156 2573
Fragments arranged by size:
2573 1156 1085 611
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5425
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3156 4114 442
Size: 416 53 83 399 24 1739 958 1753
Fragments arranged by size:
1753 1739 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5425
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2296 2555 2651 4085 1239
Size: 1057 259 96 1434 2579
Fragments arranged by size:
2579 1434 1057 259 96
Bpu10I CC'TnA_GC
Cuts at: 2381 2381
Size: 5425
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3550 4415 4713 3550
Size: 865 298 4262
Fragments arranged by size:
4262 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2132 2274 4088 882
Size: 617 633 142 1814 2219
Fragments arranged by size:
2219 1814 633 617 142
BsaAI yAC'GTr
Cuts at: 493 1204 3216 493
Size: 711 2012 2702
Fragments arranged by size:
2702 2012 711
BsaBI GATnn'nnATC
Cuts at: 5419 5419
Size: 5425
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2194 3232 3614 4249
Size: 53 83 186 936 661 1038 382 635
Cuts at: 4249 275
Size: 1451
Fragments arranged by size:
1451 1038 936 661 635 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 2088 3858 4256 4530 4677 5088 2088
Size: 1770 398 274 147 411 2425
Fragments arranged by size:
2425 1770 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2193 2223 2420 2450 1178
Size: 30 165 30 790 30 197 30 4153
Fragments arranged by size:
4153 790 197 165 30 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2024 2543 1186
Size: 838 519 4068
Fragments arranged by size:
4068 838 519
BseYI C'CCAG_C
Cuts at: 2074 2284 2356 2449 2470 2636 4628 5124 2074
Size: 210 72 93 21 166 1992 496 2375
Fragments arranged by size:
2375 1992 496 210 166 93 72 21
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2122 2171 2465 1163
Size: 573 386 49 294 4123
Fragments arranged by size:
4123 573 386 294 49
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2875 3636 4664 1540
Size: 275 186 874 761 1028 2301
Fragments arranged by size:
2301 1028 874 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3486 3571 4642 3486
Size: 85 1071 4269
Fragments arranged by size:
4269 1071 85
BsiWI C'GTAC_G
Cuts at: 2020 2020
Size: 5425
BsmI GAATG_Cn'
Cuts at: 2936 3029 2936
Size: 93 5332
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2401 2744 3486 3571 4642 1391
Size: 399 611 343 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 611 399 343 85
BspEI T'CCGG_A
Cuts at: 5088 5088
Size: 5425
BspHI T'CATG_A
Cuts at: 3314 5044 3314
Size: 1730 3695
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2239 2780 844
Size: 1395 541 3489
Fragments arranged by size:
3489 1395 541
BsrBI CCG'CTC
Cuts at: 1394 1823 3312 1394
Size: 429 1489 3507
Fragments arranged by size:
3507 1489 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3920 4094 65
Size: 1183 2672 174 1396
Fragments arranged by size:
2672 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2321 4069 4256 1700
Size: 110 511 1748 187 2869
Fragments arranged by size:
2869 1748 511 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5425
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5425
BssSI C'ACGA_G
Cuts at: 2068 2273 3485 4497 2068
Size: 205 1212 1012 2996
Fragments arranged by size:
2996 1212 1012 205
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5425
BstBI TT'CG_AA
Cuts at: 4229 4229
Size: 5425
BstEII G'GTnAC_C
Cuts at: 1184 2209 2407 1184
Size: 1025 198 4202
Fragments arranged by size:
4202 1025 198
BstYI r'GATC_y
Cuts at: 1972 2755 3122 3507 3524 4976 5062 5074 5420
Size: 783 367 385 17 1452 86 12 346
Cuts at: 5420 1972
Size: 1977
Fragments arranged by size:
1977 1452 783 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2372 2372
Size: 5425
BtgI C'CryG_G
Cuts at: 513 1065 2004 2494 513
Size: 552 939 490 3444
Fragments arranged by size:
3444 939 552 490
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4686
Fragments arranged by size:
4686 683 56
BtsI GCAGTG_nn'
Cuts at: 2110 2941 3735 3755 2110
Size: 831 794 20 3780
Fragments arranged by size:
3780 831 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5425
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5390
DraI TTT'AAA
Cuts at: 2729 2729
Size: 5425
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4432 809
Size: 507 3116 1802
Fragments arranged by size:
3116 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2157 2478 2872
Size: 54 1425 50 275 18 327 321 394
Cuts at: 2872 3761 5390 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 394 327 321 275 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2872 1537
Size: 275 1060 4090
Fragments arranged by size:
4090 1060 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3355 1353
Size: 2002 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4012 4386 4532 387
Size: 1064 138 2423 374 146 1280
Fragments arranged by size:
2423 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2296 2555 2651 3488 4085 4872 5140
Size: 393 664 259 96 837 597 787 268
Cuts at: 5140 1239
Size: 1524
Fragments arranged by size:
1524 837 787 664 597 393 268 259
96
EcoNI CCTnn'n_nnAGG
Cuts at: 2371 2371
Size: 5425
EcoO109I rG'GnC_Cy
Cuts at: 2377 2397 2398 2377
Size: 20 1 5404
Fragments arranged by size:
5404 20 1
EcoRI G'AATT_C
Cuts at: 2734 3112 2734
Size: 378 5047
FspI TGC'GCA
Cuts at: 3931 3931
Size: 5425
HaeII r_GCGC'y
Cuts at: 1678 4572 1678
Size: 2894 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2193 2225 2252 2284 4066
Size: 32 135 32 621 32 27 32 1782
Cuts at: 4066 4098 4140 4172 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1782 621 135 42 32 32 32
32 32 32 27
HincII GTy'rAC
Cuts at: 669 1657 1938 2281 2769 3015 669
Size: 988 281 343 488 246 3079
Fragments arranged by size:
3079 988 488 343 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5425
HpaI GTT'AAC
Cuts at: 3015 3015
Size: 5425
KpnI G_GTAC'C
Cuts at: 2697 2750 2697
Size: 53 5372
MfeI C'AATT_G
Cuts at: 3024 3024
Size: 5425
MluI A'CGCG_T
Cuts at: 5301 5301
Size: 5425
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4539 4723 1305
Size: 3234 184 2007
Fragments arranged by size:
3234 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2480 10
Size: 54 1425 343 648 2955
Fragments arranged by size:
2955 1425 648 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3383 3742 3901 518
Size: 648 2217 359 159 2042
Fragments arranged by size:
2217 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2185 2251 2328 2338 2356 2449 2470 2841
Size: 579 66 77 10 18 93 21 371
Cuts at: 2841 3518 4666 4911 1606
Size: 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 579 371 245 93 77
66 21 18 10
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3934
Fragments arranged by size:
3934 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5425
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5425
NotI GC'GGCC_GC
Cuts at: 2872 2872
Size: 5425
NspI r_CATG'y
Cuts at: 1132 1229 2783 4328 1132
Size: 97 1554 1545 2229
Fragments arranged by size:
2229 1554 1545 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5425
PciI A'CATG_T
Cuts at: 4324 4324
Size: 5425
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5425
PmeI GTTT'AAAC
Cuts at: 2729 2729
Size: 5425
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3494 3526 5007 5039 3494
Size: 32 1481 32 3880
Fragments arranged by size:
3880 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5425
PsiI TTA'TAA
Cuts at: 2995 2995
Size: 5425
PspOMI G'GGCC_C
Cuts at: 2397 2397
Size: 5425
PstI C_TGCA'G
Cuts at: 830 2184 2236 2777 830
Size: 1354 52 541 3478
Fragments arranged by size:
3478 1354 541 52
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5425
PvuII CAG'CTG
Cuts at: 2185 2251 2356 2449 2185
Size: 66 105 93 5161
Fragments arranged by size:
5161 105 93 66
SalI G'TCGA_C
Cuts at: 1936 2767 1936
Size: 831 4594
SbfI CC_TGCA'GG
Cuts at: 2236 2777 2236
Size: 541 4884
ScaI AGT'ACT
Cuts at: 3673 5385 3673
Size: 1712 3713
SfcI C'TryA_G
Cuts at: 826 1045 2180 2232 2773 3908 4589 4780 826
Size: 219 1135 52 541 1135 681 191 1471
Fragments arranged by size:
1471 1135 1135 681 541 219 191 52
SfiI GGCCn_nnn'nGGCC
Cuts at: 2156 2156
Size: 5425
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5425
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5425
SmaI CCC'GGG
Cuts at: 1872 2114 2588 2752 1872
Size: 242 474 164 4545
Fragments arranged by size:
4545 474 242 164
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3529 4430 4692 820
Size: 197 926 1586 901 262 1553
Fragments arranged by size:
1586 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3216 493
Size: 2723 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5425
SphI G_CATG'C
Cuts at: 1132 2783 1132
Size: 1651 3774
SspI AAT'ATT
Cuts at: 5 52 3349 5
Size: 47 3297 2081
Fragments arranged by size:
3297 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5425
StyI C'CwwG_G
Cuts at: 513 1065 2004 2164 2439 2864 513
Size: 552 939 160 275 425 3074
Fragments arranged by size:
3074 939 552 425 275 160
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2069 2507 2603 3452 3469 3622 3807
Size: 1255 489 438 96 849 17 153 185
Cuts at: 3807 4252 325
Size: 445 1498
Fragments arranged by size:
1498 1255 849 489 445 438 185 153
96 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3671 5383 96
Size: 274 80 33 51 1443 1694 1712 138
Fragments arranged by size:
1712 1694 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5385 5417 5385
Size: 32 5393
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5425
XbaI T'CTAG_A
Cuts at: 2761 2761
Size: 5425
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2446 2446
Size: 5425
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5425
XmaI C'CCGG_G
Cuts at: 1870 2112 2586 2750 1870
Size: 242 474 164 4545
Fragments arranged by size:
4545 474 242 164
XmnI GAAnn'nnTTC
Cuts at: 3554 3554
Size: 5425
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3233 276
Size: 53 83 186 936 1699 2468
Fragments arranged by size:
2468 1699 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI
BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI
BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I
BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI
EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI
HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI
MmeI MscI MslI MspA1I NcoI NdeI NheI NotI
NspI PasI PciI PflMI PmeI PpiI PshAI PsiI
PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI
SfiI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BfrBI
BplI BsmBI BstXI BstZ17I DraIII EcoICRI EcoRV FalI
FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI
PacI PfoI PmlI PpuMI PspXI PsrI RsrII SacI
SacII SanDI SapI SexAI SfoI SrfI SwaI