(Circular) (Six-base) MAPSORT of: pFN21AB9597.seq Check: 728 from: 1 to: 6196 pFN21AB9597 6196 bp With 182 enzymes: SgfI * December 8, 2014 13:39 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 4006 278 Size: 53 83 186 936 2470 2468 Fragments arranged by size: 2470 2468 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3539 1937 Size: 1602 4594 Acc65I G'GTAC_C Cuts at: 2938 3517 2938 Size: 579 5617 AclI AA'CG_TT Cuts at: 1563 4323 4696 1563 Size: 2760 373 3063 Fragments arranged by size: 3063 2760 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 4259 5643 5911 1632 Size: 2627 1384 268 1917 Fragments arranged by size: 2627 1917 1384 268 AfeI AGC'GCT Cuts at: 2669 2669 Size: 6196 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5999 AflIII A'CryG_T Cuts at: 1203 2631 5095 6072 1203 Size: 1428 2464 977 1327 Fragments arranged by size: 2464 1428 1327 977 AgeI A'CCGG_T Cuts at: 5027 5027 Size: 6196 AhdI GACnn_n'nnGTC Cuts at: 2620 4925 2620 Size: 2305 3891 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6196 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2669 1184 Size: 1485 4711 AlwNI CAG_nnn'CTG Cuts at: 2022 2686 3020 3939 5511 2022 Size: 664 334 919 1572 2707 Fragments arranged by size: 2707 1572 919 664 334 ApaI G_GGCC'C Cuts at: 2139 2334 3044 3050 3056 2139 Size: 195 710 6 6 5279 Fragments arranged by size: 5279 710 195 6 6 ApaLI G'TGCA_C Cuts at: 4253 5409 4253 Size: 1156 5040 ApoI r'AATT_y Cuts at: 1493 3505 3731 3883 5992 1493 Size: 2012 226 152 2109 1697 Fragments arranged by size: 2109 2012 1697 226 152 AseI AT'TA_AT Cuts at: 160 1032 4750 160 Size: 872 3718 1606 Fragments arranged by size: 3718 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6196 AvaI C'yCGr_G Cuts at: 1870 1943 2148 2265 2293 2333 2587 3037 3043 Size: 73 205 117 28 40 254 450 6 Cuts at: 3043 3049 3292 3425 3521 1870 Size: 6 243 133 96 4545 Fragments arranged by size: 4545 450 254 243 205 133 117 96 73 40 28 6 6 BamHI G'GATC_C Cuts at: 2758 3526 3893 2758 Size: 768 367 5061 Fragments arranged by size: 5061 768 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2303 2795 2938 3140 3218 Size: 325 217 627 516 492 143 202 78 Cuts at: 3218 3296 3517 4972 618 Size: 78 221 1455 1842 Fragments arranged by size: 1842 1455 627 516 492 325 221 217 202 143 78 78 BanII G_rGCy'C Cuts at: 1391 2051 2121 2139 2250 2294 2334 2375 2435 Size: 660 70 18 111 44 40 41 60 Cuts at: 2435 3044 3050 3056 3311 3515 1391 Size: 609 6 6 255 204 4072 Fragments arranged by size: 4072 660 609 255 204 111 70 60 44 41 40 18 6 6 BbeI G_GCGC'C Cuts at: 2307 2799 3222 3300 2307 Size: 492 423 78 5203 Fragments arranged by size: 5203 492 423 78 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 5225 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 4387 4421 1903 Size: 34 2450 34 3678 Fragments arranged by size: 3678 2450 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4088 5298 4088 Size: 1210 4986 BclI T'GATC_A Cuts at: 1548 1548 Size: 6196 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2312 2750 3060 Size: 107 122 71 631 605 640 438 310 Cuts at: 3060 3273 3483 4807 136 Size: 213 210 1324 1525 Fragments arranged by size: 1525 1324 640 631 605 438 310 213 210 122 107 71 BglII A'GATC_T Cuts at: 2460 6191 2460 Size: 3731 2465 BlpI GC'TnA_GC Cuts at: 3613 3613 Size: 6196 Bme1580I G_kGCm'C Cuts at: 1790 2139 2334 3044 3050 3056 4257 5413 1790 Size: 349 195 710 6 6 1201 1156 2573 Fragments arranged by size: 2573 1201 1156 710 349 195 6 6 BmgBI CAC'GTC Cuts at: 1318 2089 2155 1318 Size: 771 66 5359 Fragments arranged by size: 5359 771 66 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3927 4885 442 Size: 416 53 83 399 24 2510 958 1753 Fragments arranged by size: 2510 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6196 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4856 1239 Size: 3617 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3167 4321 5186 5484 3167 Size: 1154 865 298 3879 Fragments arranged by size: 3879 1154 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4859 882 Size: 617 3360 2219 Fragments arranged by size: 3360 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3987 493 Size: 711 2783 2702 Fragments arranged by size: 2783 2702 711 BsaBI GATnn'nnATC Cuts at: 6190 6190 Size: 6196 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2261 2304 2659 2796 Size: 53 83 186 936 728 43 355 137 Cuts at: 2796 3116 3219 3297 4003 4385 5020 275 Size: 320 103 78 706 382 635 1451 Fragments arranged by size: 1451 936 728 706 635 382 355 320 186 137 103 83 78 53 43 BsaWI w'CCGG_w Cuts at: 4629 5027 5301 5448 5859 4629 Size: 398 274 147 411 4966 Fragments arranged by size: 4966 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5971 Fragments arranged by size: 5971 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2231 2234 1186 Size: 1045 3 5148 Fragments arranged by size: 5148 1045 3 BseYI C'CCAG_C Cuts at: 2122 3013 3088 5399 5895 2122 Size: 891 75 2311 496 2423 Fragments arranged by size: 2423 2311 891 496 75 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 3225 1163 Size: 573 1489 4134 Fragments arranged by size: 4134 1489 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2058 2280 2482 2628 3646 4407 Size: 275 186 57 222 202 146 1018 761 Cuts at: 4407 5435 1540 Size: 1028 2301 Fragments arranged by size: 2301 1028 1018 761 275 222 202 186 146 57 BsiHKAI G_wGCw'C Cuts at: 2051 2121 2160 4257 4342 5413 2051 Size: 70 39 2097 85 1071 2834 Fragments arranged by size: 2834 2097 1071 85 70 39 BsmI GAATG_Cn' Cuts at: 3707 3800 3707 Size: 93 6103 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2051 2121 2139 2160 2250 2294 2334 Size: 399 261 70 18 21 90 44 40 Cuts at: 2334 2375 2435 3044 3050 3056 3311 3515 4257 Size: 41 60 609 6 6 255 204 742 Cuts at: 4257 4342 5413 1391 Size: 85 1071 2174 Fragments arranged by size: 2174 1071 742 609 399 261 255 204 90 85 70 60 44 41 40 21 18 6 6 BspEI T'CCGG_A Cuts at: 5859 5859 Size: 6196 BspHI T'CATG_A Cuts at: 4085 5815 4085 Size: 1730 4466 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3551 844 Size: 2707 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2921 4083 1394 Size: 429 1098 1162 3507 Fragments arranged by size: 3507 1162 1098 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4691 4865 65 Size: 1183 3443 174 1396 Fragments arranged by size: 3443 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2854 3137 3299 3473 4840 5027 1700 Size: 110 1044 283 162 174 1367 187 2869 Fragments arranged by size: 2869 1367 1044 283 187 174 162 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 6196 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 6196 BssSI C'ACGA_G Cuts at: 2171 4256 5268 2171 Size: 2085 1012 3099 Fragments arranged by size: 3099 2085 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 2022 2686 794 Size: 1228 664 4304 Fragments arranged by size: 4304 1228 664 BstBI TT'CG_AA Cuts at: 5000 5000 Size: 6196 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6196 BstXI CCAn_nnnn'nTGG Cuts at: 2011 2011 Size: 6196 BstYI r'GATC_y Cuts at: 1972 2460 2565 2758 3526 3893 4278 4295 5747 Size: 488 105 193 768 367 385 17 1452 Cuts at: 5747 5833 5845 6191 1972 Size: 86 12 346 1977 Fragments arranged by size: 1977 1452 768 488 385 367 346 193 105 86 17 12 Bsu36I CC'TnA_GG Cuts at: 3031 3445 3031 Size: 414 5782 BtgI C'CryG_G Cuts at: 513 1065 2164 2181 2307 2317 2415 2745 2904 Size: 552 1099 17 126 10 98 330 159 Cuts at: 2904 3144 3268 3336 513 Size: 240 124 68 3373 Fragments arranged by size: 3373 1099 552 330 240 159 126 124 98 68 17 10 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2386 487 Size: 683 56 1160 4297 Fragments arranged by size: 4297 1160 683 56 BtsI GCAGTG_nn' Cuts at: 3712 4506 4526 3712 Size: 794 20 5382 Fragments arranged by size: 5382 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6196 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6161 DraI TTT'AAA Cuts at: 3500 3500 Size: 6196 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2558 5203 809 Size: 507 1242 2645 1802 Fragments arranged by size: 2645 1802 1242 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2055 2167 2277 Size: 54 1425 50 275 18 225 112 110 Cuts at: 2277 2418 2479 2625 3366 3403 3643 4532 6161 Size: 141 61 146 741 37 240 889 1629 Cuts at: 6161 8 Size: 43 Fragments arranged by size: 1629 1425 889 741 275 240 225 146 141 112 110 61 54 50 43 37 18 EagI C'GGCC_G Cuts at: 1537 1812 2055 2277 2479 2625 3643 1537 Size: 275 243 222 202 146 1018 4090 Fragments arranged by size: 4090 1018 275 243 222 202 146 EarI CTCTTCn'nnn_ Cuts at: 1353 4126 1353 Size: 2773 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2519 4783 5157 5303 387 Size: 1064 138 930 2264 374 146 1280 Fragments arranged by size: 2264 1280 1064 930 374 146 138 EcoICRI GAG'CTC Cuts at: 2049 2119 2049 Size: 70 6126 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 4259 4856 5643 5911 1239 Size: 393 2627 597 787 268 1524 Fragments arranged by size: 2627 1524 787 597 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 3030 3030 Size: 6196 EcoO109I rG'GnC_Cy Cuts at: 2136 2330 3053 3178 3341 3450 2136 Size: 194 723 125 163 109 4882 Fragments arranged by size: 4882 723 194 163 125 109 EcoRI G'AATT_C Cuts at: 3505 3883 3505 Size: 378 5818 FseI GG_CCGG'CC Cuts at: 2858 2858 Size: 6196 FspI TGC'GCA Cuts at: 4702 4702 Size: 6196 HaeII r_GCGC'y Cuts at: 1678 2307 2671 2769 2799 3222 3300 5343 1678 Size: 629 364 98 30 423 78 2043 2531 Fragments arranged by size: 2531 2043 629 423 364 98 78 30 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2021 2053 2207 2239 2606 Size: 32 135 32 449 32 154 32 367 Cuts at: 2606 2638 4837 4869 4911 4943 1373 Size: 32 2199 32 42 32 2626 Fragments arranged by size: 2626 2199 449 367 154 135 42 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3540 3786 669 Size: 988 281 1602 246 3079 Fragments arranged by size: 3079 1602 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6196 HpaI GTT'AAC Cuts at: 3786 3786 Size: 6196 KasI G'GCGC_C Cuts at: 2303 2795 3218 3296 2303 Size: 492 423 78 5203 Fragments arranged by size: 5203 492 423 78 KpnI G_GTAC'C Cuts at: 2942 3521 2942 Size: 579 5617 MfeI C'AATT_G Cuts at: 3795 3795 Size: 6196 MluI A'CGCG_T Cuts at: 6072 6072 Size: 6196 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 3002 5310 5494 1305 Size: 1697 2308 184 2007 Fragments arranged by size: 2308 2007 1697 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2420 3368 3405 10 Size: 54 1425 343 588 948 37 2801 Fragments arranged by size: 2801 1425 948 588 343 54 37 MslI CAynn'nnrTG Cuts at: 518 1166 2087 2414 4154 4513 4672 518 Size: 648 921 327 1740 359 159 2042 Fragments arranged by size: 2042 1740 921 648 359 327 159 MspA1I CmG'CkG Cuts at: 1606 2019 2106 2183 2285 2309 2319 2327 2377 Size: 413 87 77 102 24 10 8 50 Cuts at: 2377 2478 2747 2906 2932 3146 3338 3612 4289 Size: 101 269 159 26 214 192 274 677 Cuts at: 4289 5437 5682 1606 Size: 1148 245 2120 Fragments arranged by size: 2120 1148 677 413 274 269 245 214 192 159 102 101 87 77 50 26 24 10 8 NaeI GCC'GGC Cuts at: 2856 3139 3301 3475 2856 Size: 283 162 174 5577 Fragments arranged by size: 5577 283 174 162 NarI GG'CG_CC Cuts at: 2304 2796 3219 3297 2304 Size: 492 423 78 5203 Fragments arranged by size: 5203 492 423 78 NcoI C'CATG_G Cuts at: 513 1065 2415 513 Size: 552 1350 4294 Fragments arranged by size: 4294 1350 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 6196 NgoMIV G'CCGG_C Cuts at: 2854 3137 3299 3473 2854 Size: 283 162 174 5577 Fragments arranged by size: 5577 283 174 162 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6196 NotI GC'GGCC_GC Cuts at: 2277 2479 3643 2277 Size: 202 1164 4830 Fragments arranged by size: 4830 1164 202 NspI r_CATG'y Cuts at: 1132 1229 2635 3554 5099 1132 Size: 97 1406 919 1545 2229 Fragments arranged by size: 2229 1545 1406 919 97 PasI CC'CwG_GG Cuts at: 1348 2011 1348 Size: 663 5533 PciI A'CATG_T Cuts at: 2631 5095 2631 Size: 2464 3732 PflMI CCAn_nnn'nTGG Cuts at: 1108 3262 3364 1108 Size: 2154 102 3940 Fragments arranged by size: 3940 2154 102 PfoI T'CCnGG_A Cuts at: 3313 3313 Size: 6196 PmeI GTTT'AAAC Cuts at: 3500 3500 Size: 6196 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4265 4297 5778 5810 4265 Size: 32 1481 32 4651 Fragments arranged by size: 4651 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 3341 3450 3341 Size: 109 6087 PshAI GACnn'nnGTC Cuts at: 1613 2347 1613 Size: 734 5462 PsiI TTA'TAA Cuts at: 3766 3766 Size: 6196 PspOMI G'GGCC_C Cuts at: 2135 2330 3040 3046 3052 2135 Size: 195 710 6 6 5279 Fragments arranged by size: 5279 710 195 6 6 PstI C_TGCA'G Cuts at: 830 2430 3548 830 Size: 1600 1118 3478 Fragments arranged by size: 3478 1600 1118 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6196 PvuII CAG'CTG Cuts at: 2019 2932 2019 Size: 913 5283 SacI G_AGCT'C Cuts at: 2051 2121 2051 Size: 70 6126 SacII CC_GC'GG Cuts at: 2184 2310 2320 2748 2907 3147 3339 2184 Size: 126 10 428 159 240 192 5041 Fragments arranged by size: 5041 428 240 192 159 126 10 SalI G'TCGA_C Cuts at: 1936 3538 1936 Size: 1602 4594 SanDI GG'GwC_CC Cuts at: 3450 3450 Size: 6196 SbfI CC_TGCA'GG Cuts at: 3548 3548 Size: 6196 ScaI AGT'ACT Cuts at: 4444 6156 4444 Size: 1712 4484 SfcI C'TryA_G Cuts at: 826 1045 2426 3249 3544 4679 5360 5551 826 Size: 219 1381 823 295 1135 681 191 1471 Fragments arranged by size: 1471 1381 1135 823 681 295 219 191 SfiI GGCCn_nnn'nGGCC Cuts at: 3060 3060 Size: 6196 SfoI GGC'GCC Cuts at: 2305 2797 3220 3298 2305 Size: 492 423 78 5203 Fragments arranged by size: 5203 492 423 78 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6196 SgrAI Cr'CCGG_yG Cuts at: 1700 3299 1700 Size: 1599 4597 SmaI CCC'GGG Cuts at: 1872 2150 2267 2295 2335 2589 3045 3051 3294 Size: 278 117 28 40 254 456 6 243 Cuts at: 3294 3427 3523 1872 Size: 133 96 4545 Fragments arranged by size: 4545 456 278 254 243 133 117 96 40 28 6 SmlI C'TyrA_G Cuts at: 820 1017 1943 3182 4300 5201 5463 820 Size: 197 926 1239 1118 901 262 1553 Fragments arranged by size: 1553 1239 1118 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3987 493 Size: 3494 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6196 SphI G_CATG'C Cuts at: 1132 3554 1132 Size: 2422 3774 SrfI GCCC'GGGC Cuts at: 2335 3045 3051 2335 Size: 710 6 5480 Fragments arranged by size: 5480 710 6 SspI AAT'ATT Cuts at: 5 52 4120 5 Size: 47 4068 2081 Fragments arranged by size: 4068 2081 47 StuI AGG'CCT Cuts at: 1517 3063 3238 1517 Size: 1546 175 4475 Fragments arranged by size: 4475 1546 175 StyI C'CwwG_G Cuts at: 513 1065 2415 3635 513 Size: 552 1350 1220 3074 Fragments arranged by size: 3074 1350 1220 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2715 4223 4240 4393 4578 5023 325 Size: 1255 1135 1508 17 153 185 445 1498 Fragments arranged by size: 1508 1498 1255 1135 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 4442 6154 96 Size: 274 80 33 51 1443 2465 1712 138 Fragments arranged by size: 2465 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 6156 6188 6156 Size: 32 6164 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 6196 XbaI T'CTAG_A Cuts at: 3532 3532 Size: 6196 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6196 XmaI C'CCGG_G Cuts at: 1870 2148 2265 2293 2333 2587 3043 3049 3292 Size: 278 117 28 40 254 456 6 243 Cuts at: 3292 3425 3521 1870 Size: 133 96 4545 Fragments arranged by size: 4545 456 278 254 243 133 117 96 40 28 6 XmnI GAAnn'nnTTC Cuts at: 4325 4325 Size: 6196 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 4004 276 Size: 53 83 186 936 2470 2468 Fragments arranged by size: 2470 2468 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FseI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SacI SacII SalI SanDI SbfI ScaI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SrfI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI AscI AvrII BaeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I DraIII EcoRV FalI FspAI NruI NsiI PacI PmlI PspXI PsrI RsrII SapI SexAI SwaI XcmI