Restriction map for
pFN21AB9390
(Circular) (Six-base) MAPSORT of: pFN21AB9390.seq Check: 7674 from: 1 to: 5440
pFN21AB9390 5440 bp
With 182 enzymes: SgfI *
January 16, 2009 15:28 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3250 278
Size: 53 83 186 936 1714 2468
Fragments arranged by size:
2468 1714 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2783 1937
Size: 846 4594
Acc65I G'GTAC_C
Cuts at: 2761 2761
Size: 5440
AclI AA'CG_TT
Cuts at: 1563 3567 3940 1563
Size: 2004 373 3063
Fragments arranged by size:
3063 2004 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2160 2382 2612 3503 4887 5155 1632
Size: 528 222 230 891 1384 268 1917
Fragments arranged by size:
1917 1384 891 528 268 230 222
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5243
AflIII A'CryG_T
Cuts at: 1203 4339 5316 1203
Size: 3136 977 1327
Fragments arranged by size:
3136 1327 977
AgeI A'CCGG_T
Cuts at: 4271 4271
Size: 5440
AhdI GACnn_n'nnGTC
Cuts at: 4169 4169
Size: 5440
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5440
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5440
AlwNI CAG_nnn'CTG
Cuts at: 2233 3183 4755 2233
Size: 950 1572 2918
Fragments arranged by size:
2918 1572 950
ApaLI G'TGCA_C
Cuts at: 3497 4653 3497
Size: 1156 4284
ApoI r'AATT_y
Cuts at: 1493 2322 2749 2975 3127 5236 1493
Size: 829 427 226 152 2109 1697
Fragments arranged by size:
2109 1697 829 427 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3994 160
Size: 872 2962 1606
Fragments arranged by size:
2962 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5440
AvaI C'yCGr_G
Cuts at: 1870 1943 2607 2765 1870
Size: 73 664 158 4545
Fragments arranged by size:
4545 664 158 73
BamHI G'GATC_C
Cuts at: 2770 3137 2770
Size: 367 5073
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2090 2761 4216 618
Size: 325 217 627 303 671 1455 1842
Fragments arranged by size:
1842 1455 671 627 325 303 217
BanII G_rGCy'C
Cuts at: 1391 2299 2451 2759 1391
Size: 908 152 308 4072
Fragments arranged by size:
4072 908 308 152
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2556 928
Size: 971 657 3812
Fragments arranged by size:
3812 971 657
BbvCI CC'TCA_GC
Cuts at: 2076 2126 2076
Size: 50 5390
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3631 3665 1903
Size: 34 1694 34 3678
Fragments arranged by size:
3678 1694 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3332 4542 3332
Size: 1210 4230
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5440
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4051 136
Size: 107 122 71 631 605 2379 1525
Fragments arranged by size:
2379 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5435 5435
Size: 5440
BlpI GC'TnA_GC
Cuts at: 2445 2857 2445
Size: 412 5028
Bme1580I G_kGCm'C
Cuts at: 1790 2093 2203 3501 4657 1790
Size: 303 110 1298 1156 2573
Fragments arranged by size:
2573 1298 1156 303 110
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5440
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3171 4129 442
Size: 416 53 83 399 24 1754 958 1753
Fragments arranged by size:
1754 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5440
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2554 2554
Size: 5440
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2045 2255 2537 4100 1239
Size: 806 210 282 1563 2579
Fragments arranged by size:
2579 1563 806 282 210
Bpu10I CC'TnA_GC
Cuts at: 2076 2126 2523 2076
Size: 50 397 4993
Fragments arranged by size:
4993 397 50
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2708 3565 4430 4728 2708
Size: 857 865 298 3420
Fragments arranged by size:
3420 865 857 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2126 4103 882
Size: 617 627 1977 2219
Fragments arranged by size:
2219 1977 627 617
BsaAI yAC'GTr
Cuts at: 493 1204 3231 493
Size: 711 2027 2702
Fragments arranged by size:
2702 2027 711
BsaBI GATnn'nnATC
Cuts at: 5434 5434
Size: 5440
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2070 3247 3629 4264
Size: 53 83 186 936 537 1177 382 635
Cuts at: 4264 275
Size: 1451
Fragments arranged by size:
1451 1177 936 635 537 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 2046 3873 4271 4545 4692 5103 2046
Size: 1827 398 274 147 411 2383
Fragments arranged by size:
2383 1827 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5215
Fragments arranged by size:
5215 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2093 2450 1186
Size: 907 357 4176
Fragments arranged by size:
4176 907 357
BseYI C'CCAG_C
Cuts at: 4643 5139 4643
Size: 496 4944
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2451 1163
Size: 573 715 4152
Fragments arranged by size:
4152 715 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2374 2890 3651 4679 1540
Size: 275 186 373 516 761 1028 2301
Fragments arranged by size:
2301 1028 761 516 373 275 186
BsiHKAI G_wGCw'C
Cuts at: 2451 3501 3586 4657 2451
Size: 1050 85 1071 3234
Fragments arranged by size:
3234 1071 1050 85
BsmI GAATG_Cn'
Cuts at: 2951 3044 2951
Size: 93 5347
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2093 2203 2299 2451 2759 3501 3586
Size: 399 303 110 96 152 308 742 85
Cuts at: 3586 4657 1391
Size: 1071 2174
Fragments arranged by size:
2174 1071 742 399 308 303 152 110
96 85
BspEI T'CCGG_A
Cuts at: 2046 5103 2046
Size: 3057 2383
BspHI T'CATG_A
Cuts at: 3329 5059 3329
Size: 1730 3710
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2795 844
Size: 1951 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2440 3327 1394
Size: 429 617 887 3507
Fragments arranged by size:
3507 887 617 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2355 3935 4109 65
Size: 1183 1107 1580 174 1396
Fragments arranged by size:
1580 1396 1183 1107 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4084 4271 1700
Size: 110 2274 187 2869
Fragments arranged by size:
2869 2274 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5440
BssHII G'CGCG_C
Cuts at: 1925 2083 1925
Size: 158 5282
BssSI C'ACGA_G
Cuts at: 2114 3500 4512 2114
Size: 1386 1012 3042
Fragments arranged by size:
3042 1386 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5440
BstBI TT'CG_AA
Cuts at: 4244 4244
Size: 5440
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5440
BstYI r'GATC_y
Cuts at: 1972 2043 2331 2770 3137 3522 3539 4991 5077
Size: 71 288 439 367 385 17 1452 86
Cuts at: 5077 5089 5435 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 439 385 367 346 288 86
71 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3949
Fragments arranged by size:
3949 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4701
Fragments arranged by size:
4701 683 56
BtsI GCAGTG_nn'
Cuts at: 2956 3750 3770 2956
Size: 794 20 4626
Fragments arranged by size:
4626 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5440
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5405
DraI TTT'AAA
Cuts at: 2744 2744
Size: 5440
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4447 809
Size: 507 3131 1802
Fragments arranged by size:
3131 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2887 3776 5405
Size: 54 1425 50 275 18 1057 889 1629
Cuts at: 5405 8
Size: 43
Fragments arranged by size:
1629 1425 1057 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2887 1537
Size: 275 1075 4090
Fragments arranged by size:
4090 1075 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2181 2379 2559 3370 1353
Size: 828 198 180 811 3423
Fragments arranged by size:
3423 828 811 198 180
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2081 4027 4401 4547 387
Size: 1064 138 492 1946 374 146 1280
Fragments arranged by size:
1946 1280 1064 492 374 146 138
EcoICRI GAG'CTC
Cuts at: 2449 2449
Size: 5440
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2045 2160 2255 2382 2537 2612 3503
Size: 393 413 115 95 127 155 75 891
Cuts at: 3503 4100 4887 5155 1239
Size: 597 787 268 1524
Fragments arranged by size:
1524 891 787 597 413 393 268 155
127 115 95 75
EcoNI CCTnn'n_nnAGG
Cuts at: 2732 2732
Size: 5440
EcoO109I rG'GnC_Cy
Cuts at: 2575 2575
Size: 5440
EcoRI G'AATT_C
Cuts at: 2749 3127 2749
Size: 378 5062
FspI TGC'GCA
Cuts at: 2036 3946 2036
Size: 1910 3530
HaeII r_GCGC'y
Cuts at: 1678 4587 1678
Size: 2909 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4081 4113 4155 4187 1373
Size: 32 135 32 2509 32 42 32 2626
Fragments arranged by size:
2626 2509 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2784 3030 669
Size: 988 281 846 246 3079
Fragments arranged by size:
3079 988 846 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5440
HpaI GTT'AAC
Cuts at: 3030 3030
Size: 5440
KpnI G_GTAC'C
Cuts at: 2765 2765
Size: 5440
MfeI C'AATT_G
Cuts at: 3039 3039
Size: 5440
MluI A'CGCG_T
Cuts at: 5316 5316
Size: 5440
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2172 2359 2607 4554 4738 1305
Size: 867 187 248 1947 184 2007
Fragments arranged by size:
2007 1947 867 248 187 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3618
Fragments arranged by size:
3618 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3398 3757 3916 518
Size: 648 2232 359 159 2042
Fragments arranged by size:
2232 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2075 2138 2176 2856 3533 4681 4926 1606
Size: 469 63 38 680 677 1148 245 2120
Fragments arranged by size:
2120 1148 680 677 469 245 63 38
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3949
Fragments arranged by size:
3949 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5440
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5440
NotI GC'GGCC_GC
Cuts at: 2887 2887
Size: 5440
NspI r_CATG'y
Cuts at: 1132 1229 2798 4343 1132
Size: 97 1569 1545 2229
Fragments arranged by size:
2229 1569 1545 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5440
PciI A'CATG_T
Cuts at: 4339 4339
Size: 5440
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5440
PmeI GTTT'AAAC
Cuts at: 2744 2744
Size: 5440
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3509 3541 5022 5054 3509
Size: 32 1481 32 3895
Fragments arranged by size:
3895 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2575 2575
Size: 5440
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5440
PsiI TTA'TAA
Cuts at: 3010 3010
Size: 5440
PstI C_TGCA'G
Cuts at: 830 2058 2100 2792 830
Size: 1228 42 692 3478
Fragments arranged by size:
3478 1228 692 42
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5440
PvuII CAG'CTG
Cuts at: 2176 2176
Size: 5440
SacI G_AGCT'C
Cuts at: 2451 2451
Size: 5440
SalI G'TCGA_C
Cuts at: 1936 2782 1936
Size: 846 4594
SbfI CC_TGCA'GG
Cuts at: 2058 2792 2058
Size: 734 4706
ScaI AGT'ACT
Cuts at: 2537 3688 5400 2537
Size: 1151 1712 2577
Fragments arranged by size:
2577 1712 1151
SfcI C'TryA_G
Cuts at: 826 1045 2054 2096 2788 3923 4604 4795 826
Size: 219 1009 42 692 1135 681 191 1471
Fragments arranged by size:
1471 1135 1009 692 681 219 191 42
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5440
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5440
SmaI CCC'GGG
Cuts at: 1872 2767 1872
Size: 895 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2687 3544 4445 4707 820
Size: 197 926 744 857 901 262 1553
Fragments arranged by size:
1553 926 901 857 744 262 197
SnaBI TAC'GTA
Cuts at: 493 3231 493
Size: 2738 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5440
SphI G_CATG'C
Cuts at: 1132 2798 1132
Size: 1666 3774
SspI AAT'ATT
Cuts at: 5 52 3364 5
Size: 47 3312 2081
Fragments arranged by size:
3312 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5440
StyI C'CwwG_G
Cuts at: 513 1065 2004 2879 513
Size: 552 939 875 3074
Fragments arranged by size:
3074 939 875 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3467 3484 3637 3822 4267 325
Size: 1255 1887 17 153 185 445 1498
Fragments arranged by size:
1887 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2535 3686 5398
Size: 274 80 33 51 1443 558 1151 1712
Cuts at: 5398 96
Size: 138
Fragments arranged by size:
1712 1443 1151 558 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5400 5432 5400
Size: 32 5408
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5440
XbaI T'CTAG_A
Cuts at: 2776 2776
Size: 5440
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5440
XmaI C'CCGG_G
Cuts at: 1870 2765 1870
Size: 895 4545
XmnI GAAnn'nnTTC
Cuts at: 3569 3569
Size: 5440
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3248 276
Size: 53 83 186 936 1714 2468
Fragments arranged by size:
2468 1714 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI
PstI PvuI PvuII SacI SalI SbfI ScaI SfcI
SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BfrBI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoRV
FalI FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PfoI PmlI PspOMI PspXI PsrI RsrII
SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI
XcmI