Restriction map for
pFN21AB8928
(Circular) (Six-base) MAPSORT of: pFN21AB8928.seq Check: 1331 from: 1 to: 5545
pFN21AB8928 5545 bp
With 182 enzymes: SgfI *
October 20, 2009 10:55 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2087 2087
Size: 5545
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3355 278
Size: 53 83 186 936 1819 2468
Fragments arranged by size:
2468 1819 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2202 2248 2888 1937
Size: 265 46 640 4594
Fragments arranged by size:
4594 640 265 46
Acc65I G'GTAC_C
Cuts at: 2866 2866
Size: 5545
AclI AA'CG_TT
Cuts at: 1563 2180 3672 4045 1563
Size: 617 1492 373 3063
Fragments arranged by size:
3063 1492 617 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3608 4992 5260 1632
Size: 1976 1384 268 1917
Fragments arranged by size:
1976 1917 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5348
AflIII A'CryG_T
Cuts at: 1203 2139 4444 5421 1203
Size: 936 2305 977 1327
Fragments arranged by size:
2305 1327 977 936
AgeI A'CCGG_T
Cuts at: 4376 4376
Size: 5545
AhdI GACnn_n'nnGTC
Cuts at: 4274 4274
Size: 5545
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5545
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5545
AlwNI CAG_nnn'CTG
Cuts at: 2029 3288 4860 2029
Size: 1259 1572 2714
Fragments arranged by size:
2714 1572 1259
ApaLI G'TGCA_C
Cuts at: 3602 4758 3602
Size: 1156 4389
ApoI r'AATT_y
Cuts at: 1493 2854 3080 3232 5341 1493
Size: 1361 226 152 2109 1697
Fragments arranged by size:
2109 1697 1361 226 152
AseI AT'TA_AT
Cuts at: 160 1032 2277 4099 160
Size: 872 1245 1822 1606
Fragments arranged by size:
1822 1606 1245 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5545
AvaI C'yCGr_G
Cuts at: 1870 1943 2870 1870
Size: 73 927 4545
Fragments arranged by size:
4545 927 73
BamHI G'GATC_C
Cuts at: 2875 3242 2875
Size: 367 5178
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2866 4321 618
Size: 325 217 627 1079 1455 1842
Fragments arranged by size:
1842 1455 1079 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2864 1391
Size: 1473 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2461 2523 928
Size: 971 562 62 3950
Fragments arranged by size:
3950 971 562 62
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3736 3770 1903
Size: 34 1799 34 3678
Fragments arranged by size:
3678 1799 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3437 4647 3437
Size: 1210 4335
BclI T'GATC_A
Cuts at: 1548 2527 1548
Size: 979 4566
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4156 136
Size: 107 122 71 631 605 2484 1525
Fragments arranged by size:
2484 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2444 5540 2444
Size: 3096 2449
BlpI GC'TnA_GC
Cuts at: 2962 2962
Size: 5545
Bme1580I G_kGCm'C
Cuts at: 1790 3606 4762 1790
Size: 1816 1156 2573
Fragments arranged by size:
2573 1816 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5545
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3276 4234 442
Size: 416 53 83 399 24 1859 958 1753
Fragments arranged by size:
1859 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5545
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2383 2383
Size: 5545
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2246 4205 1239
Size: 1007 1959 2579
Fragments arranged by size:
2579 1959 1007
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2120 3670 4535 4833 2120
Size: 1550 865 298 2832
Fragments arranged by size:
2832 1550 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4208 882
Size: 617 2709 2219
Fragments arranged by size:
2709 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2086 3336 493
Size: 711 882 1250 2702
Fragments arranged by size:
2702 1250 882 711
BsaBI GATnn'nnATC
Cuts at: 5539 5539
Size: 5545
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3352 3734 4369 275
Size: 53 83 186 936 1819 382 635 1451
Fragments arranged by size:
1819 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3978 4376 4650 4797 5208 3978
Size: 398 274 147 411 4315
Fragments arranged by size:
4315 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5320
Fragments arranged by size:
5320 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5545
BseYI C'CCAG_C
Cuts at: 4748 5244 4748
Size: 496 5049
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2108 2797 1163
Size: 573 372 689 3911
Fragments arranged by size:
3911 689 573 372
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2995 3756 4784 1540
Size: 275 186 994 761 1028 2301
Fragments arranged by size:
2301 1028 994 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2272 3606 3691 4762 2272
Size: 1334 85 1071 3055
Fragments arranged by size:
3055 1334 1071 85
BsmI GAATG_Cn'
Cuts at: 3056 3149 3056
Size: 93 5452
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2272 2864 3606 3691 4762 1391
Size: 399 482 592 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 592 482 399 85
BspEI T'CCGG_A
Cuts at: 5208 5208
Size: 5545
BspHI T'CATG_A
Cuts at: 3434 5164 3434
Size: 1730 3815
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2087 2900 844
Size: 1243 813 3489
Fragments arranged by size:
3489 1243 813
BsrBI CCG'CTC
Cuts at: 1394 1823 2062 3432 1394
Size: 429 239 1370 3507
Fragments arranged by size:
3507 1370 429 239
BsrDI GCAATG_nn'
Cuts at: 65 1248 4040 4214 65
Size: 1183 2792 174 1396
Fragments arranged by size:
2792 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2067 4189 4376 1700
Size: 110 257 2122 187 2869
Fragments arranged by size:
2869 2122 257 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5545
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5545
BssSI C'ACGA_G
Cuts at: 3605 4617 3605
Size: 1012 4533
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5545
BstBI TT'CG_AA
Cuts at: 4349 4349
Size: 5545
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5545
BstXI CCAn_nnnn'nTGG
Cuts at: 2712 2712
Size: 5545
BstYI r'GATC_y
Cuts at: 1972 2383 2444 2626 2875 3242 3627 3644 5096
Size: 411 61 182 249 367 385 17 1452
Cuts at: 5096 5182 5194 5540 1972
Size: 86 12 346 1977
Fragments arranged by size:
1977 1452 411 385 367 346 249 182
86 61 17 12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4993
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4806
Fragments arranged by size:
4806 683 56
BtsI GCAGTG_nn'
Cuts at: 3061 3855 3875 3061
Size: 794 20 4731
Fragments arranged by size:
4731 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5545
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5510
DraI TTT'AAA
Cuts at: 2232 2849 2232
Size: 617 4928
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4552 809
Size: 507 3236 1802
Fragments arranged by size:
3236 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2992 3881 5510
Size: 54 1425 50 275 18 1162 889 1629
Cuts at: 5510 8
Size: 43
Fragments arranged by size:
1629 1425 1162 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2992 1537
Size: 275 1180 4090
Fragments arranged by size:
4090 1180 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3475 1353
Size: 2122 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4132 4506 4652 387
Size: 1064 138 2543 374 146 1280
Fragments arranged by size:
2543 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2246 3608 4205 4992 5260 1239
Size: 393 614 1362 597 787 268 1524
Fragments arranged by size:
1524 1362 787 614 597 393 268
EcoRI G'AATT_C
Cuts at: 2854 3232 2854
Size: 378 5167
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2619 2619
Size: 5545
FspI TGC'GCA
Cuts at: 4051 4051
Size: 5545
HaeII r_GCGC'y
Cuts at: 1678 4692 1678
Size: 3014 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2822 2854 4186 4218 4260
Size: 32 135 32 1250 32 1332 32 42
Cuts at: 4260 4292 1373
Size: 32 2626
Fragments arranged by size:
2626 1332 1250 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2889 3135 669
Size: 988 281 951 246 3079
Fragments arranged by size:
3079 988 951 281 246
HindIII A'AGCT_T
Cuts at: 748 2601 748
Size: 1853 3692
HpaI GTT'AAC
Cuts at: 3135 3135
Size: 5545
KpnI G_GTAC'C
Cuts at: 2870 2870
Size: 5545
MfeI C'AATT_G
Cuts at: 2706 3144 2706
Size: 438 5107
MluI A'CGCG_T
Cuts at: 5421 5421
Size: 5545
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4659 4843 1305
Size: 3354 184 2007
Fragments arranged by size:
3354 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3723
Fragments arranged by size:
3723 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3503 3862 4021 518
Size: 648 2337 359 159 2042
Fragments arranged by size:
2337 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2470 2961 3638 4786 5031 1606
Size: 864 491 677 1148 245 2120
Fragments arranged by size:
2120 1148 864 677 491 245
NaeI GCC'GGC
Cuts at: 2069 2069
Size: 5545
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4993
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5545
NgoMIV G'CCGG_C
Cuts at: 2067 2067
Size: 5545
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5545
NotI GC'GGCC_GC
Cuts at: 2992 2992
Size: 5545
NspI r_CATG'y
Cuts at: 1132 1229 2131 2903 4448 1132
Size: 97 902 772 1545 2229
Fragments arranged by size:
2229 1545 902 772 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5545
PciI A'CATG_T
Cuts at: 4444 4444
Size: 5545
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5545
PmeI GTTT'AAAC
Cuts at: 2849 2849
Size: 5545
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3614 3646 5127 5159 3614
Size: 32 1481 32 4000
Fragments arranged by size:
4000 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5545
PsiI TTA'TAA
Cuts at: 3115 3115
Size: 5545
PstI C_TGCA'G
Cuts at: 830 2897 830
Size: 2067 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5545
SalI G'TCGA_C
Cuts at: 1936 2887 1936
Size: 951 4594
SbfI CC_TGCA'GG
Cuts at: 2897 2897
Size: 5545
ScaI AGT'ACT
Cuts at: 2812 3793 5505 2812
Size: 981 1712 2852
Fragments arranged by size:
2852 1712 981
SfcI C'TryA_G
Cuts at: 826 1045 2249 2893 4028 4709 4900 826
Size: 219 1204 644 1135 681 191 1471
Fragments arranged by size:
1471 1204 1135 681 644 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5545
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5545
SmaI CCC'GGG
Cuts at: 1872 2872 1872
Size: 1000 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2099 3649 4550 4812 820
Size: 197 926 156 1550 901 262 1553
Fragments arranged by size:
1553 1550 926 901 262 197 156
SnaBI TAC'GTA
Cuts at: 493 3336 493
Size: 2843 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5545
SphI G_CATG'C
Cuts at: 1132 2903 1132
Size: 1771 3774
SspI AAT'ATT
Cuts at: 5 52 3469 5
Size: 47 3417 2081
Fragments arranged by size:
3417 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5545
StyI C'CwwG_G
Cuts at: 513 1065 2580 2984 513
Size: 552 1515 404 3074
Fragments arranged by size:
3074 1515 552 404
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3572 3589 3742 3927 4372 325
Size: 1255 1992 17 153 185 445 1498
Fragments arranged by size:
1992 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2031 2810 3791
Size: 274 80 33 51 1443 54 779 981
Cuts at: 3791 5503 96
Size: 1712 138
Fragments arranged by size:
1712 1443 981 779 274 138 80 54
51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2361 2393 5505 5537 2361
Size: 32 3112 32 2369
Fragments arranged by size:
3112 2369 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5545
XbaI T'CTAG_A
Cuts at: 2881 2881
Size: 5545
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2666 2757 2666
Size: 91 5454
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5545
XmaI C'CCGG_G
Cuts at: 1870 2870 1870
Size: 1000 4545
XmnI GAAnn'nnTTC
Cuts at: 2715 3674 2715
Size: 959 4586
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3353 276
Size: 53 83 186 936 1819 2468
Fragments arranged by size:
2468 1819 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoRI FalI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI
PasI PciI PflMI PmeI PpiI PshAI PsiI PstI
PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI
EcoNI EcoO109I EcoRV FseI FspAI KasI NarI NruI
NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI
PvuII RsrII SacI SacII SanDI SapI SexAI SfiI
SfoI SrfI SwaI