Restriction map for
pFN21AB8586
(Circular) (Six-base) MAPSORT of: pFN21AB8586.seq Check: 434 from: 1 to: 5623
pFN21AB8586 5623 bp
With 182 enzymes: SgfI *
January 16, 2009 15:27 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3433 278
Size: 53 83 186 936 1897 2468
Fragments arranged by size:
2468 1897 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2966 1937
Size: 1029 4594
Acc65I G'GTAC_C
Cuts at: 2944 2944
Size: 5623
AclI AA'CG_TT
Cuts at: 1563 3750 4123 1563
Size: 2187 373 3063
Fragments arranged by size:
3063 2187 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3686 5070 5338 1632
Size: 2054 1384 268 1917
Fragments arranged by size:
2054 1917 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5426
AflIII A'CryG_T
Cuts at: 1203 2770 4522 5499 1203
Size: 1567 1752 977 1327
Fragments arranged by size:
1752 1567 1327 977
AgeI A'CCGG_T
Cuts at: 4454 4454
Size: 5623
AhdI GACnn_n'nnGTC
Cuts at: 4352 4352
Size: 5623
AleI CACnn'nnGTG
Cuts at: 1166 2789 1166
Size: 1623 4000
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5623
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2570 2602 2570
Size: 32 5591
AlwNI CAG_nnn'CTG
Cuts at: 2906 3366 4938 2906
Size: 460 1572 3591
Fragments arranged by size:
3591 1572 460
ApaLI G'TGCA_C
Cuts at: 3680 4836 3680
Size: 1156 4467
ApoI r'AATT_y
Cuts at: 1493 2036 2474 2932 3158 3310 5419 1493
Size: 543 438 458 226 152 2109 1697
Fragments arranged by size:
2109 1697 543 458 438 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4177 160
Size: 872 3145 1606
Fragments arranged by size:
3145 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5623
AvaI C'yCGr_G
Cuts at: 1870 1943 2318 2948 1870
Size: 73 375 630 4545
Fragments arranged by size:
4545 630 375 73
BamHI G'GATC_C
Cuts at: 2098 2129 2953 3320 2098
Size: 31 824 367 4401
Fragments arranged by size:
4401 824 367 31
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2944 4399 618
Size: 325 217 627 1157 1455 1842
Fragments arranged by size:
1842 1455 1157 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2942 1391
Size: 1551 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2459 928
Size: 971 560 4092
Fragments arranged by size:
4092 971 560
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3814 3848 1903
Size: 34 1877 34 3678
Fragments arranged by size:
3678 1877 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3515 4725 3515
Size: 1210 4413
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5623
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4234 136
Size: 107 122 71 631 605 2562 1525
Fragments arranged by size:
2562 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2359 5618 2359
Size: 3259 2364
BlpI GC'TnA_GC
Cuts at: 3040 3040
Size: 5623
Bme1580I G_kGCm'C
Cuts at: 1790 2472 3684 4840 1790
Size: 682 1212 1156 2573
Fragments arranged by size:
2573 1212 1156 682
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5623
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2180 3354 4312
Size: 416 53 83 399 24 763 1174 958
Cuts at: 4312 442
Size: 1753
Fragments arranged by size:
1753 1174 958 763 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5623
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2621 4283 1239
Size: 1382 1662 2579
Fragments arranged by size:
2579 1662 1382
Bpu10I CC'TnA_GC
Cuts at: 2143 2143
Size: 5623
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3748 4613 4911 3748
Size: 865 298 4460
Fragments arranged by size:
4460 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4286 882
Size: 617 2787 2219
Fragments arranged by size:
2787 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3414 493
Size: 711 2210 2702
Fragments arranged by size:
2702 2210 711
BsaBI GATnn'nnATC
Cuts at: 5617 5617
Size: 5623
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3430 3812 4447 275
Size: 53 83 186 936 1897 382 635 1451
Fragments arranged by size:
1897 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 4056 4454 4728 4875 5286 4056
Size: 398 274 147 411 4393
Fragments arranged by size:
4393 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2570 2594 2600 2624 2872
Size: 30 165 30 1167 24 6 24 248
Cuts at: 2872 2902 1178
Size: 30 3899
Fragments arranged by size:
3899 1167 248 165 30 30 30 24
24 6
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5623
BseYI C'CCAG_C
Cuts at: 4826 5322 4826
Size: 496 5127
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 5050
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3073 3834 4862 1540
Size: 275 186 1072 761 1028 2301
Fragments arranged by size:
2301 1072 1028 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3684 3769 4840 3684
Size: 85 1071 4467
Fragments arranged by size:
4467 1071 85
BsmI GAATG_Cn'
Cuts at: 3134 3227 3134
Size: 93 5530
BsmBI CGTCTCn'nnnn_
Cuts at: 2590 2590
Size: 5623
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2472 2942 3684 3769 4840 1391
Size: 399 682 470 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 682 470 399 85
BspEI T'CCGG_A
Cuts at: 5286 5286
Size: 5623
BspHI T'CATG_A
Cuts at: 2697 3512 5242 2697
Size: 815 1730 3078
Fragments arranged by size:
3078 1730 815
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2978 844
Size: 2134 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3510 1394
Size: 429 1687 3507
Fragments arranged by size:
3507 1687 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2050 2739 4118 4292 65
Size: 1183 802 689 1379 174 1396
Fragments arranged by size:
1396 1379 1183 802 689 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4267 4454 1700
Size: 110 2457 187 2869
Fragments arranged by size:
2869 2457 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5623
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5623
BssSI C'ACGA_G
Cuts at: 3683 4695 3683
Size: 1012 4611
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5623
BstBI TT'CG_AA
Cuts at: 4427 4427
Size: 5623
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5623
BstYI r'GATC_y
Cuts at: 1972 2098 2129 2300 2359 2720 2953 3320 3705
Size: 126 31 171 59 361 233 367 385
Cuts at: 3705 3722 5174 5260 5272 5618 1972
Size: 17 1452 86 12 346 1977
Fragments arranged by size:
1977 1452 385 367 361 346 233 171
126 86 59 31 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4132
Fragments arranged by size:
4132 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4884
Fragments arranged by size:
4884 683 56
BtsI GCAGTG_nn'
Cuts at: 3139 3933 3953 3139
Size: 794 20 4809
Fragments arranged by size:
4809 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5623
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5588
DraI TTT'AAA
Cuts at: 2927 2927
Size: 5623
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4630 809
Size: 507 3314 1802
Fragments arranged by size:
3314 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2744 2781 3070
Size: 54 1425 50 275 18 914 37 289
Cuts at: 3070 3959 5588 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 914 889 289 275 54 50
43 37 18
EagI C'GGCC_G
Cuts at: 1537 1812 3070 1537
Size: 275 1258 4090
Fragments arranged by size:
4090 1258 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2143 2636 3553 1353
Size: 790 493 917 3423
Fragments arranged by size:
3423 917 790 493
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4210 4584 4730 387
Size: 1064 138 2621 374 146 1280
Fragments arranged by size:
2621 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2621 3686 4283 5070 5338 1239
Size: 393 989 1065 597 787 268 1524
Fragments arranged by size:
1524 1065 989 787 597 393 268
EcoRI G'AATT_C
Cuts at: 2474 2932 3310 2474
Size: 458 378 4787
Fragments arranged by size:
4787 458 378
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2321 2321
Size: 5623
FspI TGC'GCA
Cuts at: 4129 4129
Size: 5623
HaeII r_GCGC'y
Cuts at: 1678 4770 1678
Size: 3092 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2613 2645 2851 2883 4264
Size: 32 135 32 1041 32 206 32 1381
Cuts at: 4264 4296 4338 4370 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1381 1041 206 135 42 32 32
32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2967 3213 669
Size: 988 281 1029 246 3079
Fragments arranged by size:
3079 1029 988 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5623
HpaI GTT'AAC
Cuts at: 3213 3213
Size: 5623
KpnI G_GTAC'C
Cuts at: 2948 2948
Size: 5623
MfeI C'AATT_G
Cuts at: 2787 2796 3222 2787
Size: 9 426 5188
Fragments arranged by size:
5188 426 9
MluI A'CGCG_T
Cuts at: 2770 5499 2770
Size: 2729 2894
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2451 2666 4737 4921 1305
Size: 1146 215 2071 184 2007
Fragments arranged by size:
2071 2007 1146 215 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2746 2783 10
Size: 54 1425 343 914 37 2850
Fragments arranged by size:
2850 1425 914 343 54 37
MslI CAynn'nnrTG
Cuts at: 518 1166 2789 3581 3940 4099 518
Size: 648 1623 792 359 159 2042
Fragments arranged by size:
2042 1623 792 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2750 3039 3716 4864 5109 1606
Size: 1144 289 677 1148 245 2120
Fragments arranged by size:
2120 1148 1144 677 289 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 4132
Fragments arranged by size:
4132 939 552
NdeI CA'TA_TG
Cuts at: 387 2811 387
Size: 2424 3199
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5623
NotI GC'GGCC_GC
Cuts at: 3070 3070
Size: 5623
NspI r_CATG'y
Cuts at: 1132 1229 2981 4526 1132
Size: 97 1752 1545 2229
Fragments arranged by size:
2229 1752 1545 97
PasI CC'CwG_GG
Cuts at: 1348 2707 1348
Size: 1359 4264
PciI A'CATG_T
Cuts at: 4522 4522
Size: 5623
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5623
PmeI GTTT'AAAC
Cuts at: 2927 2927
Size: 5623
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2570 2602 3692 3724 5205 5237 2570
Size: 32 1090 32 1481 32 2956
Fragments arranged by size:
2956 1481 1090 32 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5623
PsiI TTA'TAA
Cuts at: 3193 3193
Size: 5623
PstI C_TGCA'G
Cuts at: 830 2911 2975 830
Size: 2081 64 3478
Fragments arranged by size:
3478 2081 64
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5623
PvuII CAG'CTG
Cuts at: 2750 2750
Size: 5623
SalI G'TCGA_C
Cuts at: 1936 2965 1936
Size: 1029 4594
SbfI CC_TGCA'GG
Cuts at: 2975 2975
Size: 5623
ScaI AGT'ACT
Cuts at: 3871 5583 3871
Size: 1712 3911
SexAI A'CCwGG_T
Cuts at: 2277 2277
Size: 5623
SfcI C'TryA_G
Cuts at: 826 1045 2907 2971 4106 4787 4978 826
Size: 219 1862 64 1135 681 191 1471
Fragments arranged by size:
1862 1471 1135 681 219 191 64
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5623
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5623
SmaI CCC'GGG
Cuts at: 1872 2320 2950 1872
Size: 448 630 4545
Fragments arranged by size:
4545 630 448
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3727 4628 4890 820
Size: 197 926 1784 901 262 1553
Fragments arranged by size:
1784 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3414 493
Size: 2921 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5623
SphI G_CATG'C
Cuts at: 1132 2981 1132
Size: 1849 3774
SspI AAT'ATT
Cuts at: 5 52 3547 5
Size: 47 3495 2081
Fragments arranged by size:
3495 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5623
StyI C'CwwG_G
Cuts at: 513 1065 2004 3062 513
Size: 552 939 1058 3074
Fragments arranged by size:
3074 1058 939 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3650 3667 3820 4005 4450 325
Size: 1255 2070 17 153 185 445 1498
Fragments arranged by size:
2070 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3869 5581 96
Size: 274 80 33 51 1443 1892 1712 138
Fragments arranged by size:
1892 1712 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2594 2626 5583 5615 2594
Size: 32 2957 32 2602
Fragments arranged by size:
2957 2602 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5623
XbaI T'CTAG_A
Cuts at: 2959 2959
Size: 5623
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5623
XmaI C'CCGG_G
Cuts at: 1870 2318 2948 1870
Size: 448 630 4545
Fragments arranged by size:
4545 630 448
XmnI GAAnn'nnTTC
Cuts at: 3752 3752
Size: 5623
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3431 276
Size: 53 83 186 936 1897 2468
Fragments arranged by size:
2468 1897 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoRI FalI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII
SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI
EcoNI EcoO109I EcoRV FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI
PspXI PsrI RsrII SacI SacII SanDI SapI SfiI
SfoI SrfI SwaI XcmI