Restriction map for
pFN21AB8283
(Circular) (Six-base) MAPSORT of: pFN21AB8283.seq Check: 4012 from: 1 to: 5581
pFN21AB8283 5581 bp
With 182 enzymes: SgfI *
February 27, 2009 14:41 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3391 278
Size: 53 83 186 936 1855 2468
Fragments arranged by size:
2468 1855 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2924 1937
Size: 987 4594
Acc65I G'GTAC_C
Cuts at: 2902 2902
Size: 5581
AclI AA'CG_TT
Cuts at: 1563 3708 4081 1563
Size: 2145 373 3063
Fragments arranged by size:
3063 2145 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2062 2398 3644 5028 5296 1632
Size: 430 336 1246 1384 268 1917
Fragments arranged by size:
1917 1384 1246 430 336 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5384
AflIII A'CryG_T
Cuts at: 1203 2608 4480 5457 1203
Size: 1405 1872 977 1327
Fragments arranged by size:
1872 1405 1327 977
AgeI A'CCGG_T
Cuts at: 4412 4412
Size: 5581
AhdI GACnn_n'nnGTC
Cuts at: 4310 4310
Size: 5581
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5581
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5581
AlwNI CAG_nnn'CTG
Cuts at: 3324 4896 3324
Size: 1572 4009
ApaLI G'TGCA_C
Cuts at: 3638 4794 3638
Size: 1156 4425
ApoI r'AATT_y
Cuts at: 1493 2028 2280 2868 2890 3116 3268 5377 1493
Size: 535 252 588 22 226 152 2109 1697
Fragments arranged by size:
2109 1697 588 535 252 226 152 22
AseI AT'TA_AT
Cuts at: 160 1032 4135 160
Size: 872 3103 1606
Fragments arranged by size:
3103 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5581
AvaI C'yCGr_G
Cuts at: 1870 1943 2906 1870
Size: 73 963 4545
Fragments arranged by size:
4545 963 73
BamHI G'GATC_C
Cuts at: 2911 3278 2911
Size: 367 5214
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2902 4357 618
Size: 325 217 627 1115 1455 1842
Fragments arranged by size:
1842 1455 1115 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2678 2900 1391
Size: 1287 222 4072
Fragments arranged by size:
4072 1287 222
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2068 928
Size: 971 169 4441
Fragments arranged by size:
4441 971 169
BbvCI CC'TCA_GC
Cuts at: 2015 2015
Size: 5581
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3772 3806 1903
Size: 34 1835 34 3678
Fragments arranged by size:
3678 1835 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3473 4683 3473
Size: 1210 4371
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5581
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4192 136
Size: 107 122 71 631 605 2520 1525
Fragments arranged by size:
2520 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5576 5576
Size: 5581
BlpI GC'TnA_GC
Cuts at: 2998 2998
Size: 5581
Bme1580I G_kGCm'C
Cuts at: 1790 3642 4798 1790
Size: 1852 1156 2573
Fragments arranged by size:
2573 1852 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5581
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3312 4270 442
Size: 416 53 83 399 24 1895 958 1753
Fragments arranged by size:
1895 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5581
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2697 2697
Size: 5581
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2310 2562 4241 1239
Size: 1071 252 1679 2579
Fragments arranged by size:
2579 1679 1071 252
Bpu10I CC'TnA_GC
Cuts at: 2015 2015
Size: 5581
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3706 4571 4869 3706
Size: 865 298 4418
Fragments arranged by size:
4418 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4244 882
Size: 617 2745 2219
Fragments arranged by size:
2745 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3372 493
Size: 711 2168 2702
Fragments arranged by size:
2702 2168 711
BsaBI GATnn'nnATC
Cuts at: 5575 5575
Size: 5581
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3388 3770 4405 275
Size: 53 83 186 936 1855 382 635 1451
Fragments arranged by size:
1855 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 4014 4412 4686 4833 5244 4014
Size: 398 274 147 411 4351
Fragments arranged by size:
4351 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5356
Fragments arranged by size:
5356 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5581
BseYI C'CCAG_C
Cuts at: 4784 5280 4784
Size: 496 5085
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2833 1163
Size: 573 1097 3911
Fragments arranged by size:
3911 1097 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 3031 3792 4820 1540
Size: 275 186 1030 761 1028 2301
Fragments arranged by size:
2301 1030 1028 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2678 3642 3727 4798 2678
Size: 964 85 1071 3461
Fragments arranged by size:
3461 1071 964 85
BsmI GAATG_Cn'
Cuts at: 2648 3092 3185 2648
Size: 444 93 5044
Fragments arranged by size:
5044 444 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2678 2900 3642 3727 4798 1391
Size: 399 888 222 742 85 1071 2174
Fragments arranged by size:
2174 1071 888 742 399 222 85
BspEI T'CCGG_A
Cuts at: 5244 5244
Size: 5581
BspHI T'CATG_A
Cuts at: 3470 5200 3470
Size: 1730 3851
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2936 844
Size: 2092 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3468 1394
Size: 429 1645 3507
Fragments arranged by size:
3507 1645 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2653 4076 4250 65
Size: 1183 1405 1423 174 1396
Fragments arranged by size:
1423 1405 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4225 4412 1700
Size: 110 2415 187 2869
Fragments arranged by size:
2869 2415 187 110
BsrGI T'GTAC_A
Cuts at: 96 2605 96
Size: 2509 3072
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5581
BssSI C'ACGA_G
Cuts at: 2119 3641 4653 2119
Size: 1522 1012 3047
Fragments arranged by size:
3047 1522 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5581
BstBI TT'CG_AA
Cuts at: 2220 4385 2220
Size: 2165 3416
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5581
BstYI r'GATC_y
Cuts at: 1972 2911 3278 3663 3680 5132 5218 5230 5576
Size: 939 367 385 17 1452 86 12 346
Cuts at: 5576 1972
Size: 1977
Fragments arranged by size:
1977 1452 939 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 5029
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4842
Fragments arranged by size:
4842 683 56
BtsI GCAGTG_nn'
Cuts at: 2821 3097 3891 3911 2821
Size: 276 794 20 4491
Fragments arranged by size:
4491 794 276 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5581
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 2635 2670 529
Size: 35 2071 35 3440
Fragments arranged by size:
3440 2071 35 35
DraI TTT'AAA
Cuts at: 2473 2885 2473
Size: 412 5169
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4588 809
Size: 507 3272 1802
Fragments arranged by size:
3272 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2500 3028 3917
Size: 54 1425 50 275 18 670 528 889
Cuts at: 3917 5546 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 670 528 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 3028 1537
Size: 275 1216 4090
Fragments arranged by size:
4090 1216 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3511 1353
Size: 2158 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4168 4542 4688 387
Size: 1064 138 2579 374 146 1280
Fragments arranged by size:
2579 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2676 2676
Size: 5581
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2062 2310 2398 2562 3644 4241 5028
Size: 393 430 248 88 164 1082 597 787
Cuts at: 5028 5296 1239
Size: 268 1524
Fragments arranged by size:
1524 1082 787 597 430 393 268 248
164 88
EcoRI G'AATT_C
Cuts at: 2890 3268 2890
Size: 378 5203
FspI TGC'GCA
Cuts at: 4087 4087
Size: 5581
HaeII r_GCGC'y
Cuts at: 1678 4728 1678
Size: 3050 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4222 4254 4296 4328 1373
Size: 32 135 32 2650 32 42 32 2626
Fragments arranged by size:
2650 2626 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2925 3171 669
Size: 988 281 987 246 3079
Fragments arranged by size:
3079 988 987 281 246
HindIII A'AGCT_T
Cuts at: 748 2213 2325 2745 2829 748
Size: 1465 112 420 84 3500
Fragments arranged by size:
3500 1465 420 112 84
HpaI GTT'AAC
Cuts at: 3171 3171
Size: 5581
KpnI G_GTAC'C
Cuts at: 2906 2906
Size: 5581
MfeI C'AATT_G
Cuts at: 3180 3180
Size: 5581
MluI A'CGCG_T
Cuts at: 5457 5457
Size: 5581
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2451 4695 4879 1305
Size: 1146 2244 184 2007
Fragments arranged by size:
2244 2007 1146 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2502 10
Size: 54 1425 343 670 3089
Fragments arranged by size:
3089 1425 670 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2625 3539 3898 4057 518
Size: 648 1459 914 359 159 2042
Fragments arranged by size:
2042 1459 914 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2997 3674 4822 5067 1606
Size: 1391 677 1148 245 2120
Fragments arranged by size:
2120 1391 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 5029
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5581
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5581
NotI GC'GGCC_GC
Cuts at: 3028 3028
Size: 5581
NspI r_CATG'y
Cuts at: 1132 1229 2612 2696 2939 4484 1132
Size: 97 1383 84 243 1545 2229
Fragments arranged by size:
2229 1545 1383 243 97 84
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5581
PciI A'CATG_T
Cuts at: 2608 4480 2608
Size: 1872 3709
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5581
PmeI GTTT'AAAC
Cuts at: 2885 2885
Size: 5581
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3650 3682 5163 5195 3650
Size: 32 1481 32 4036
Fragments arranged by size:
4036 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5581
PsiI TTA'TAA
Cuts at: 3151 3151
Size: 5581
PstI C_TGCA'G
Cuts at: 830 2933 830
Size: 2103 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5581
SacI G_AGCT'C
Cuts at: 2678 2678
Size: 5581
SalI G'TCGA_C
Cuts at: 1936 2923 1936
Size: 987 4594
SbfI CC_TGCA'GG
Cuts at: 2933 2933
Size: 5581
ScaI AGT'ACT
Cuts at: 3829 5541 3829
Size: 1712 3869
SfcI C'TryA_G
Cuts at: 826 1045 2929 4064 4745 4936 826
Size: 219 1884 1135 681 191 1471
Fragments arranged by size:
1884 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5581
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5581
SmaI CCC'GGG
Cuts at: 1872 2908 1872
Size: 1036 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3685 4586 4848 820
Size: 197 926 1742 901 262 1553
Fragments arranged by size:
1742 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3372 493
Size: 2879 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5581
SphI G_CATG'C
Cuts at: 1132 2939 1132
Size: 1807 3774
SspI AAT'ATT
Cuts at: 5 52 3505 5
Size: 47 3453 2081
Fragments arranged by size:
3453 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5581
StyI C'CwwG_G
Cuts at: 513 1065 3020 513
Size: 552 1955 3074
Fragments arranged by size:
3074 1955 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2213 3608 3625 3778 3963 4408 325
Size: 1255 633 1395 17 153 185 445 1498
Fragments arranged by size:
1498 1395 1255 633 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2605 3827 5539
Size: 274 80 33 51 1443 628 1222 1712
Cuts at: 5539 96
Size: 138
Fragments arranged by size:
1712 1443 1222 628 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5541 5573 5541
Size: 32 5549
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5581
XbaI T'CTAG_A
Cuts at: 2917 2917
Size: 5581
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5581
XmaI C'CCGG_G
Cuts at: 1870 2906 1870
Size: 1036 4545
XmnI GAAnn'nnTTC
Cuts at: 2216 2327 2747 2831 3710 2216
Size: 111 420 84 879 4087
Fragments arranged by size:
4087 879 420 111 84
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3389 276
Size: 53 83 186 936 1855 2468
Fragments arranged by size:
2468 1855 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI EcoICRI Eco57MI EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PstI PvuI SacI
SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI
SnaBI SpeI SphI SspI StuI StyI TaqII TatI
TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BfrBI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI
EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI
PspXI PsrI PvuII RsrII SacII SanDI SapI SexAI
SfiI SfoI SrfI SwaI XcmI