Restriction map for
pFN21AB8193
(Circular) (Six-base) MAPSORT of: pFN21AB8193.seq Check: 7541 from: 1 to: 5062
pFN21AB8193 5062 bp
With 182 enzymes: SgfI *
October 20, 2009 10:50 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2872 278
Size: 53 83 186 936 1336 2468
Fragments arranged by size:
2468 1336 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2405 1937
Size: 468 4594
Acc65I G'GTAC_C
Cuts at: 2167 2383 2167
Size: 216 4846
AclI AA'CG_TT
Cuts at: 1563 3189 3562 1563
Size: 1626 373 3063
Fragments arranged by size:
3063 1626 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3125 4509 4777 1632
Size: 1493 1384 268 1917
Fragments arranged by size:
1917 1493 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4865
AflIII A'CryG_T
Cuts at: 1203 3961 4938 1203
Size: 2758 977 1327
Fragments arranged by size:
2758 1327 977
AgeI A'CCGG_T
Cuts at: 3893 3893
Size: 5062
AhdI GACnn_n'nnGTC
Cuts at: 3791 3791
Size: 5062
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5062
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5062
AlwNI CAG_nnn'CTG
Cuts at: 2270 2805 4377 2270
Size: 535 1572 2955
Fragments arranged by size:
2955 1572 535
ApaI G_GGCC'C
Cuts at: 2099 2099
Size: 5062
ApaLI G'TGCA_C
Cuts at: 3119 4275 3119
Size: 1156 3906
ApoI r'AATT_y
Cuts at: 1493 2371 2597 2749 4858 1493
Size: 878 226 152 2109 1697
Fragments arranged by size:
2109 1697 878 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3616 160
Size: 872 2584 1606
Fragments arranged by size:
2584 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5062
AvaI C'yCGr_G
Cuts at: 1870 1943 2079 2179 2387 1870
Size: 73 136 100 208 4545
Fragments arranged by size:
4545 208 136 100 73
BamHI G'GATC_C
Cuts at: 2392 2759 2392
Size: 367 4695
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2167 2383 3838 618
Size: 325 217 627 380 216 1455 1842
Fragments arranged by size:
1842 1455 627 380 325 217 216
BanII G_rGCy'C
Cuts at: 1391 2021 2099 2316 2381 1391
Size: 630 78 217 65 4072
Fragments arranged by size:
4072 630 217 78 65
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4091
BbvCI CC'TCA_GC
Cuts at: 2106 2106
Size: 5062
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3253 3287 1903
Size: 34 1316 34 3678
Fragments arranged by size:
3678 1316 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2954 4164 2954
Size: 1210 3852
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5062
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2009 3673 136
Size: 107 122 71 631 605 337 1664 1525
Fragments arranged by size:
1664 1525 631 605 337 122 107 71
BglII A'GATC_T
Cuts at: 5057 5057
Size: 5062
BlpI GC'TnA_GC
Cuts at: 2015 2117 2195 2479 2015
Size: 102 78 284 4598
Fragments arranged by size:
4598 284 102 78
Bme1580I G_kGCm'C
Cuts at: 1790 2099 3123 4279 1790
Size: 309 1024 1156 2573
Fragments arranged by size:
2573 1156 1024 309
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5062
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2793 3751 442
Size: 416 53 83 399 24 1376 958 1753
Fragments arranged by size:
1753 1376 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5062
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2205 2205
Size: 5062
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3722 1239
Size: 2483 2579
Bpu10I CC'TnA_GC
Cuts at: 2106 2106
Size: 5062
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3187 4052 4350 3187
Size: 865 298 3899
Fragments arranged by size:
3899 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3725 882
Size: 617 2226 2219
Fragments arranged by size:
2226 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2853 493
Size: 711 1649 2702
Fragments arranged by size:
2702 1649 711
BsaBI GATnn'nnATC
Cuts at: 5056 5056
Size: 5062
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2869 3251 3886 275
Size: 53 83 186 936 1336 382 635 1451
Fragments arranged by size:
1451 1336 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2320 3495 3893 4167 4314 4725 2320
Size: 1175 398 274 147 411 2657
Fragments arranged by size:
2657 1175 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2132 2162 1178
Size: 30 165 30 729 30 4078
Fragments arranged by size:
4078 729 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2123 1186
Size: 937 4125
BseYI C'CCAG_C
Cuts at: 4265 4761 4265
Size: 496 4566
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4489
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2512 3273 4301 1540
Size: 275 186 511 761 1028 2301
Fragments arranged by size:
2301 1028 761 511 275 186
BsiHKAI G_wGCw'C
Cuts at: 2316 3123 3208 4279 2316
Size: 807 85 1071 3099
Fragments arranged by size:
3099 1071 807 85
BsmI GAATG_Cn'
Cuts at: 2573 2666 2573
Size: 93 4969
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2021 2099 2316 2381 3123 3208 4279
Size: 399 231 78 217 65 742 85 1071
Cuts at: 4279 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 399 231 217 85 78
65
BspEI T'CCGG_A
Cuts at: 2320 4725 2320
Size: 2405 2657
BspHI T'CATG_A
Cuts at: 2951 4681 2951
Size: 1730 3332
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2236 2250 2417 844
Size: 1392 14 167 3489
Fragments arranged by size:
3489 1392 167 14
BsrBI CCG'CTC
Cuts at: 1394 1823 2949 1394
Size: 429 1126 3507
Fragments arranged by size:
3507 1126 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3557 3731 65
Size: 1183 2309 174 1396
Fragments arranged by size:
2309 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3706 3893 1700
Size: 110 1896 187 2869
Fragments arranged by size:
2869 1896 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5062
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5062
BssSI C'ACGA_G
Cuts at: 3122 4134 3122
Size: 1012 4050
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5062
BstBI TT'CG_AA
Cuts at: 3866 3866
Size: 5062
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5062
BstYI r'GATC_y
Cuts at: 1972 2392 2759 3144 3161 4613 4699 4711 5057
Size: 420 367 385 17 1452 86 12 346
Cuts at: 5057 1972
Size: 1977
Fragments arranged by size:
1977 1452 420 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4510
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2059 487
Size: 683 56 833 3490
Fragments arranged by size:
3490 833 683 56
BtsI GCAGTG_nn'
Cuts at: 2140 2578 3372 3392 2140
Size: 438 794 20 3810
Fragments arranged by size:
3810 794 438 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5062
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5027
DraI TTT'AAA
Cuts at: 2366 2366
Size: 5062
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4069 809
Size: 507 2753 1802
Fragments arranged by size:
2753 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2070 2256 2509
Size: 54 1425 50 275 18 240 186 253
Cuts at: 2509 3398 5027 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 275 253 240 186 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2509 1537
Size: 275 697 4090
Fragments arranged by size:
4090 697 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2992 1353
Size: 1639 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3649 4023 4169 387
Size: 1064 138 2060 374 146 1280
Fragments arranged by size:
2060 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2314 2314
Size: 5062
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3125 3722 4509 4777 1239
Size: 393 1493 597 787 268 1524
Fragments arranged by size:
1524 1493 787 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2095 2095
Size: 5062
EcoRI G'AATT_C
Cuts at: 2371 2749 2371
Size: 378 4684
FspI TGC'GCA
Cuts at: 3568 3568
Size: 5062
HaeII r_GCGC'y
Cuts at: 1678 2015 4209 1678
Size: 337 2194 2531
Fragments arranged by size:
2531 2194 337
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3703 3735 3777 3809 1373
Size: 32 135 32 2131 32 42 32 2626
Fragments arranged by size:
2626 2131 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2406 2652 669
Size: 988 281 468 246 3079
Fragments arranged by size:
3079 988 468 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5062
HpaI GTT'AAC
Cuts at: 2652 2652
Size: 5062
KpnI G_GTAC'C
Cuts at: 2171 2387 2171
Size: 216 4846
MfeI C'AATT_G
Cuts at: 2661 2661
Size: 5062
MluI A'CGCG_T
Cuts at: 4938 4938
Size: 5062
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2037 2361 4176 4360 1305
Size: 732 324 1815 184 2007
Fragments arranged by size:
2007 1815 732 324 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2072 10
Size: 54 1425 343 240 3000
Fragments arranged by size:
3000 1425 343 240 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3020 3379 3538 518
Size: 648 1854 359 159 2042
Fragments arranged by size:
2042 1854 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2105 2116 2478 3155 4303 4548 1606
Size: 499 11 362 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 499 362 245 11
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4510
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5062
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5062
NotI GC'GGCC_GC
Cuts at: 2509 2509
Size: 5062
NspI r_CATG'y
Cuts at: 1132 1229 2420 3965 1132
Size: 97 1191 1545 2229
Fragments arranged by size:
2229 1545 1191 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5062
PciI A'CATG_T
Cuts at: 3961 3961
Size: 5062
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2270 1108
Size: 1162 3900
PmeI GTTT'AAAC
Cuts at: 2366 2366
Size: 5062
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3131 3163 4644 4676 3131
Size: 32 1481 32 3517
Fragments arranged by size:
3517 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5062
PsiI TTA'TAA
Cuts at: 2632 2632
Size: 5062
PspOMI G'GGCC_C
Cuts at: 2095 2095
Size: 5062
PsrI GAACnnnnnnTACnnnnnnn_nnnnn'
Cuts at: 2129 2161 2129
Size: 32 5030
PstI C_TGCA'G
Cuts at: 830 2247 2414 830
Size: 1417 167 3478
Fragments arranged by size:
3478 1417 167
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5062
PvuII CAG'CTG
Cuts at: 2105 2105
Size: 5062
SacI G_AGCT'C
Cuts at: 2316 2316
Size: 5062
SalI G'TCGA_C
Cuts at: 1936 2404 1936
Size: 468 4594
SbfI CC_TGCA'GG
Cuts at: 2247 2414 2247
Size: 167 4895
ScaI AGT'ACT
Cuts at: 3310 5022 3310
Size: 1712 3350
SfcI C'TryA_G
Cuts at: 826 1045 2213 2243 2410 3545 4226 4417 826
Size: 219 1168 30 167 1135 681 191 1471
Fragments arranged by size:
1471 1168 1135 681 219 191 167 30
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5062
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5062
SmaI CCC'GGG
Cuts at: 1872 2081 2389 1872
Size: 209 308 4545
Fragments arranged by size:
4545 308 209
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3166 4067 4329 820
Size: 197 926 1223 901 262 1553
Fragments arranged by size:
1553 1223 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2853 493
Size: 2360 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5062
SphI G_CATG'C
Cuts at: 1132 2420 1132
Size: 1288 3774
SspI AAT'ATT
Cuts at: 5 52 2986 5
Size: 47 2934 2081
Fragments arranged by size:
2934 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5062
StyI C'CwwG_G
Cuts at: 513 1065 2501 513
Size: 552 1436 3074
Fragments arranged by size:
3074 1436 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3089 3106 3259 3444 3889 325
Size: 1255 1509 17 153 185 445 1498
Fragments arranged by size:
1509 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3308 5020 96
Size: 274 80 33 51 1443 1331 1712 138
Fragments arranged by size:
1712 1443 1331 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2132 2164 5022 5054 2132
Size: 32 2858 32 2140
Fragments arranged by size:
2858 2140 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5062
XbaI T'CTAG_A
Cuts at: 2398 2398
Size: 5062
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5062
XmaI C'CCGG_G
Cuts at: 1870 2079 2387 1870
Size: 209 308 4545
Fragments arranged by size:
4545 308 209
XmnI GAAnn'nnTTC
Cuts at: 3191 3191
Size: 5062
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2870 276
Size: 53 83 186 936 1336 2468
Fragments arranged by size:
2468 1336 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI
BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI
BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI
BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI
BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI
EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI
PsrI PstI PvuI PvuII SacI SalI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI AscI AvrII BaeI BbeI BfrBI
BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI EcoRV
FalI FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PfoI PmlI PpuMI PspXI RsrII SacII
SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI