Restriction map for
pFN21AB8107
(Circular) (Six-base) MAPSORT of: pFN21AB8107.seq Check: 3531 from: 1 to: 5371
pFN21AB8107 5371 bp
With 182 enzymes: SgfI *
February 27, 2009 14:40 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3181 278
Size: 53 83 186 936 1645 2468
Fragments arranged by size:
2468 1645 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2714 1937
Size: 777 4594
Acc65I G'GTAC_C
Cuts at: 2692 2692
Size: 5371
AclI AA'CG_TT
Cuts at: 1563 3498 3871 1563
Size: 1935 373 3063
Fragments arranged by size:
3063 1935 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3434 4818 5086 1632
Size: 1802 1384 268 1917
Fragments arranged by size:
1917 1802 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5174
AflIII A'CryG_T
Cuts at: 1203 4270 5247 1203
Size: 3067 977 1327
Fragments arranged by size:
3067 1327 977
AgeI A'CCGG_T
Cuts at: 4202 4202
Size: 5371
AhdI GACnn_n'nnGTC
Cuts at: 4100 4100
Size: 5371
AleI CACnn'nnGTG
Cuts at: 1166 2330 1166
Size: 1164 4207
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5371
AlwNI CAG_nnn'CTG
Cuts at: 3114 4686 3114
Size: 1572 3799
ApaLI G'TGCA_C
Cuts at: 3428 4584 3428
Size: 1156 4215
ApoI r'AATT_y
Cuts at: 1493 2505 2680 2906 3058 5167 1493
Size: 1012 175 226 152 2109 1697
Fragments arranged by size:
2109 1697 1012 226 175 152
AseI AT'TA_AT
Cuts at: 160 1032 3925 160
Size: 872 2893 1606
Fragments arranged by size:
2893 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5371
AvaI C'yCGr_G
Cuts at: 1870 1943 2696 1870
Size: 73 753 4545
Fragments arranged by size:
4545 753 73
BamHI G'GATC_C
Cuts at: 2701 3068 2701
Size: 367 5004
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2692 4147 618
Size: 325 217 627 905 1455 1842
Fragments arranged by size:
1842 1455 905 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2690 1391
Size: 1299 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4400
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3562 3596 1903
Size: 34 1625 34 3678
Fragments arranged by size:
3678 1625 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3263 4473 3263
Size: 1210 4161
BclI T'GATC_A
Cuts at: 1548 2205 1548
Size: 657 4714
BfrBI ATG'CAT
Cuts at: 2240 2240
Size: 5371
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3982 136
Size: 107 122 71 631 605 2310 1525
Fragments arranged by size:
2310 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5366 5366
Size: 5371
BlpI GC'TnA_GC
Cuts at: 2788 2788
Size: 5371
Bme1580I G_kGCm'C
Cuts at: 1790 3432 4588 1790
Size: 1642 1156 2573
Fragments arranged by size:
2573 1642 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5371
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2541 3102 4060
Size: 416 53 83 399 24 1124 561 958
Cuts at: 4060 442
Size: 1753
Fragments arranged by size:
1753 1124 958 561 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5371
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2568 2654 4031 1239
Size: 1329 86 1377 2579
Fragments arranged by size:
2579 1377 1329 86
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3496 4361 4659 3496
Size: 865 298 4208
Fragments arranged by size:
4208 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4034 882
Size: 617 2535 2219
Fragments arranged by size:
2535 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3162 493
Size: 711 1958 2702
Fragments arranged by size:
2702 1958 711
BsaBI GATnn'nnATC
Cuts at: 5365 5365
Size: 5371
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3178 3560 4195 275
Size: 53 83 186 936 1645 382 635 1451
Fragments arranged by size:
1645 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3804 4202 4476 4623 5034 3804
Size: 398 274 147 411 4141
Fragments arranged by size:
4141 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5146
Fragments arranged by size:
5146 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2441 2627 2630 2633 1186
Size: 1255 186 3 3 3924
Fragments arranged by size:
3924 1255 186 3 3
BseYI C'CCAG_C
Cuts at: 2414 4574 5070 2414
Size: 2160 496 2715
Fragments arranged by size:
2715 2160 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4798
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2821 3582 4610 1540
Size: 275 186 820 761 1028 2301
Fragments arranged by size:
2301 1028 820 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2268 2327 3432 3517 4588 2268
Size: 59 1105 85 1071 3051
Fragments arranged by size:
3051 1105 1071 85 59
BsmI GAATG_Cn'
Cuts at: 2882 2975 2882
Size: 93 5278
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2268 2327 2690 3432 3517 4588 1391
Size: 399 478 59 363 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 478 399 363 85 59
BspEI T'CCGG_A
Cuts at: 5034 5034
Size: 5371
BspHI T'CATG_A
Cuts at: 3260 4990 3260
Size: 1730 3641
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2726 844
Size: 1882 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3258 1394
Size: 429 1435 3507
Fragments arranged by size:
3507 1435 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3866 4040 65
Size: 1183 2618 174 1396
Fragments arranged by size:
2618 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4015 4202 1700
Size: 110 2205 187 2869
Fragments arranged by size:
2869 2205 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5371
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5371
BssSI C'ACGA_G
Cuts at: 3431 4443 3431
Size: 1012 4359
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5371
BstBI TT'CG_AA
Cuts at: 4175 4175
Size: 5371
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5371
BstXI CCAn_nnnn'nTGG
Cuts at: 2047 2047
Size: 5371
BstYI r'GATC_y
Cuts at: 1972 2701 3068 3453 3470 4922 5008 5020 5366
Size: 729 367 385 17 1452 86 12 346
Cuts at: 5366 1972
Size: 1977
Fragments arranged by size:
1977 1452 729 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3880
Fragments arranged by size:
3880 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2606 487
Size: 683 56 1380 3252
Fragments arranged by size:
3252 1380 683 56
BtsI GCAGTG_nn'
Cuts at: 2887 3681 3701 2887
Size: 794 20 4557
Fragments arranged by size:
4557 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5371
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5336
DraI TTT'AAA
Cuts at: 2675 2675
Size: 5371
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4378 809
Size: 507 3062 1802
Fragments arranged by size:
3062 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2193 2655 2818
Size: 54 1425 50 275 18 363 462 163
Cuts at: 2818 3707 5336 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 462 363 275 163 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2818 1537
Size: 275 1006 4090
Fragments arranged by size:
4090 1006 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2315 2619 3301 1353
Size: 962 304 682 3423
Fragments arranged by size:
3423 962 682 304
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3958 4332 4478 387
Size: 1064 138 2369 374 146 1280
Fragments arranged by size:
2369 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2568 2654 3434 4031 4818 5086 1239
Size: 393 936 86 780 597 787 268 1524
Fragments arranged by size:
1524 936 787 780 597 393 268 86
EcoO109I rG'GnC_Cy
Cuts at: 2529 2529
Size: 5371
EcoRI G'AATT_C
Cuts at: 2505 2680 3058 2505
Size: 175 378 4818
Fragments arranged by size:
4818 378 175
EcoRV GAT'ATC
Cuts at: 2113 2113
Size: 5371
FspI TGC'GCA
Cuts at: 3877 3877
Size: 5371
HaeII r_GCGC'y
Cuts at: 1678 4518 1678
Size: 2840 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4012 4044 4086 4118 1373
Size: 32 135 32 2440 32 42 32 2626
Fragments arranged by size:
2626 2440 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2095 2715 2961 669
Size: 988 281 157 620 246 3079
Fragments arranged by size:
3079 988 620 281 246 157
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5371
HpaI GTT'AAC
Cuts at: 2961 2961
Size: 5371
KpnI G_GTAC'C
Cuts at: 2696 2696
Size: 5371
MfeI C'AATT_G
Cuts at: 2970 2970
Size: 5371
MluI A'CGCG_T
Cuts at: 5247 5247
Size: 5371
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4485 4669 1305
Size: 3180 184 2007
Fragments arranged by size:
3180 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2195 2657 10
Size: 54 1425 343 363 462 2724
Fragments arranged by size:
2724 1425 462 363 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2273 2330 3329 3688 3847 518
Size: 648 1107 57 999 359 159 2042
Fragments arranged by size:
2042 1107 999 648 359 159 57
MspA1I CmG'CkG
Cuts at: 1606 2787 3464 4612 4857 1606
Size: 1181 677 1148 245 2120
Fragments arranged by size:
2120 1181 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3880
Fragments arranged by size:
3880 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5371
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5371
NotI GC'GGCC_GC
Cuts at: 2818 2818
Size: 5371
NsiI A_TGCA'T
Cuts at: 2242 2242
Size: 5371
NspI r_CATG'y
Cuts at: 1132 1229 2729 4274 1132
Size: 97 1500 1545 2229
Fragments arranged by size:
2229 1545 1500 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5371
PciI A'CATG_T
Cuts at: 4270 4270
Size: 5371
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5371
PfoI T'CCnGG_A
Cuts at: 2584 2584
Size: 5371
PmeI GTTT'AAAC
Cuts at: 2675 2675
Size: 5371
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3440 3472 4953 4985 3440
Size: 32 1481 32 3826
Fragments arranged by size:
3826 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5371
PsiI TTA'TAA
Cuts at: 2941 2941
Size: 5371
PstI C_TGCA'G
Cuts at: 830 2319 2723 830
Size: 1489 404 3478
Fragments arranged by size:
3478 1489 404
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5371
SalI G'TCGA_C
Cuts at: 1936 2713 1936
Size: 777 4594
SapI GCTCTTCn'nnn_
Cuts at: 2315 2315
Size: 5371
SbfI CC_TGCA'GG
Cuts at: 2723 2723
Size: 5371
ScaI AGT'ACT
Cuts at: 3619 5331 3619
Size: 1712 3659
SfcI C'TryA_G
Cuts at: 826 1045 2315 2719 3854 4535 4726 826
Size: 219 1270 404 1135 681 191 1471
Fragments arranged by size:
1471 1270 1135 681 404 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5371
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5371
SmaI CCC'GGG
Cuts at: 1872 2698 1872
Size: 826 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3475 4376 4638 820
Size: 197 926 1532 901 262 1553
Fragments arranged by size:
1553 1532 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3162 493
Size: 2669 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5371
SphI G_CATG'C
Cuts at: 1132 2729 1132
Size: 1597 3774
SspI AAT'ATT
Cuts at: 5 52 3295 5
Size: 47 3243 2081
Fragments arranged by size:
3243 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5371
StyI C'CwwG_G
Cuts at: 513 1065 2004 2196 2532 2810 513
Size: 552 939 192 336 278 3074
Fragments arranged by size:
3074 939 552 336 278 192
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2560 3398 3415 3568 3753 4198 325
Size: 1255 980 838 17 153 185 445 1498
Fragments arranged by size:
1498 1255 980 838 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3617 5329 96
Size: 274 80 33 51 1443 1640 1712 138
Fragments arranged by size:
1712 1640 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5331 5363 5331
Size: 32 5339
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5371
XbaI T'CTAG_A
Cuts at: 2707 2707
Size: 5371
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5371
XmaI C'CCGG_G
Cuts at: 1870 2696 1870
Size: 826 4545
XmnI GAAnn'nnTTC
Cuts at: 3500 3500
Size: 5371
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3179 276
Size: 53 83 186 936 1645 2468
Fragments arranged by size:
2468 1645 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoO109I EcoRI EcoRV FspI HaeII Hin4I HincII
HindIII HpaI KpnI MfeI MluI MmeI MscI MslI
MspA1I NcoI NdeI NheI NotI NsiI NspI PasI
PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI
PvuI SalI SapI SbfI ScaI SfcI SgfI SgrAI
SmaI SmlI SnaBI SpeI SphI SspI StuI StyI
TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII
EcoICRI EcoNI FalI FseI FspAI KasI NaeI NarI
NgoMIV NruI PacI PmlI PpuMI PspOMI PspXI PsrI
PvuII RsrII SacI SacII SanDI SexAI SfiI SfoI
SrfI SwaI XcmI