Restriction map for
pFN21AB7913
(Circular) (Six-base) MAPSORT of: pFN21AB7913.seq Check: 8682 from: 1 to: 5188
pFN21AB7913 5188 bp
With 182 enzymes: SgfI *
April 15, 2010 09:28 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2998 278
Size: 53 83 186 936 1462 2468
Fragments arranged by size:
2468 1462 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2531 1937
Size: 594 4594
Acc65I G'GTAC_C
Cuts at: 2509 2509
Size: 5188
AclI AA'CG_TT
Cuts at: 1563 3315 3688 1563
Size: 1752 373 3063
Fragments arranged by size:
3063 1752 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2424 3251 4635 4903 1632
Size: 792 827 1384 268 1917
Fragments arranged by size:
1917 1384 827 792 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4991
AflIII A'CryG_T
Cuts at: 1203 2379 4087 5064 1203
Size: 1176 1708 977 1327
Fragments arranged by size:
1708 1327 1176 977
AgeI A'CCGG_T
Cuts at: 4019 4019
Size: 5188
AhdI GACnn_n'nnGTC
Cuts at: 3917 3917
Size: 5188
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5188
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5188
AlwNI CAG_nnn'CTG
Cuts at: 2931 4503 2931
Size: 1572 3616
ApaLI G'TGCA_C
Cuts at: 3245 4401 3245
Size: 1156 4032
ApoI r'AATT_y
Cuts at: 1493 2497 2723 2875 4984 1493
Size: 1004 226 152 2109 1697
Fragments arranged by size:
2109 1697 1004 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3742 160
Size: 872 2710 1606
Fragments arranged by size:
2710 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5188
AvaI C'yCGr_G
Cuts at: 1870 1943 2513 1870
Size: 73 570 4545
Fragments arranged by size:
4545 570 73
BamHI G'GATC_C
Cuts at: 2215 2385 2518 2885 2215
Size: 170 133 367 4518
Fragments arranged by size:
4518 367 170 133
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2509 3964 618
Size: 325 217 627 722 1455 1842
Fragments arranged by size:
1842 1455 722 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2507 1391
Size: 1116 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4217
BbvCI CC'TCA_GC
Cuts at: 2023 2023
Size: 5188
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3379 3413 1903
Size: 34 1442 34 3678
Fragments arranged by size:
3678 1442 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3080 4290 3080
Size: 1210 3978
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5188
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3799 136
Size: 107 122 71 631 605 2127 1525
Fragments arranged by size:
2127 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5183 5183
Size: 5188
BlpI GC'TnA_GC
Cuts at: 2605 2605
Size: 5188
Bme1580I G_kGCm'C
Cuts at: 1790 3249 4405 1790
Size: 1459 1156 2573
Fragments arranged by size:
2573 1459 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5188
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2919 3877 442
Size: 416 53 83 399 24 1502 958 1753
Fragments arranged by size:
1753 1502 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5188
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2357 3848 1239
Size: 1118 1491 2579
Fragments arranged by size:
2579 1491 1118
Bpu10I CC'TnA_GC
Cuts at: 2023 2023
Size: 5188
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3313 4178 4476 3313
Size: 865 298 4025
Fragments arranged by size:
4025 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3851 882
Size: 617 2352 2219
Fragments arranged by size:
2352 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2979 493
Size: 711 1775 2702
Fragments arranged by size:
2702 1775 711
BsaBI GATnn'nnATC
Cuts at: 5182 5182
Size: 5188
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2995 3377 4012 275
Size: 53 83 186 936 1462 382 635 1451
Fragments arranged by size:
1462 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2062 2469 3621 4019 4293 4440 4851 2062
Size: 407 1152 398 274 147 411 2399
Fragments arranged by size:
2399 1152 411 407 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4963
Fragments arranged by size:
4963 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2261 1186
Size: 1075 4113
BseYI C'CCAG_C
Cuts at: 4391 4887 4391
Size: 496 4692
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4615
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2638 3399 4427 1540
Size: 275 186 637 761 1028 2301
Fragments arranged by size:
2301 1028 761 637 275 186
BsiHKAI G_wGCw'C
Cuts at: 3249 3334 4405 3249
Size: 85 1071 4032
Fragments arranged by size:
4032 1071 85
BsmI GAATG_Cn'
Cuts at: 2699 2792 2699
Size: 93 5095
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2507 3249 3334 4405 1391
Size: 399 717 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 717 399 85
BspEI T'CCGG_A
Cuts at: 2469 4851 2469
Size: 2382 2806
BspHI T'CATG_A
Cuts at: 3077 4807 3077
Size: 1730 3458
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2543 844
Size: 1699 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3075 1394
Size: 429 1252 3507
Fragments arranged by size:
3507 1252 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3683 3857 65
Size: 1183 2435 174 1396
Fragments arranged by size:
2435 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3832 4019 1700
Size: 110 2022 187 2869
Fragments arranged by size:
2869 2022 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5188
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5188
BssSI C'ACGA_G
Cuts at: 3248 4260 3248
Size: 1012 4176
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5188
BstBI TT'CG_AA
Cuts at: 3992 3992
Size: 5188
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5188
BstYI r'GATC_y
Cuts at: 1972 2215 2385 2518 2885 3270 3287 4739 4825
Size: 243 170 133 367 385 17 1452 86
Cuts at: 4825 4837 5183 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 385 367 346 243 170 133
86 17 12
BtgI C'CryG_G
Cuts at: 513 1065 2094 513
Size: 552 1029 3607
Fragments arranged by size:
3607 1029 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2303 487
Size: 683 56 1077 3372
Fragments arranged by size:
3372 1077 683 56
BtsI GCAGTG_nn'
Cuts at: 2118 2704 3498 3518 2118
Size: 586 794 20 3788
Fragments arranged by size:
3788 794 586 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5188
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5153
DraI TTT'AAA
Cuts at: 2492 2492
Size: 5188
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4195 809
Size: 507 2879 1802
Fragments arranged by size:
2879 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2097 2635 3524
Size: 54 1425 50 275 18 267 538 889
Cuts at: 3524 5153 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 538 275 267 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2635 1537
Size: 275 823 4090
Fragments arranged by size:
4090 823 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3118 1353
Size: 1765 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3775 4149 4295 387
Size: 1064 138 2186 374 146 1280
Fragments arranged by size:
2186 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2357 2424 3251 3848 4635 4903 1239
Size: 393 725 67 827 597 787 268 1524
Fragments arranged by size:
1524 827 787 725 597 393 268 67
EcoNI CCTnn'n_nnAGG
Cuts at: 2085 2139 2085
Size: 54 5134
EcoRI G'AATT_C
Cuts at: 2497 2875 2497
Size: 378 4810
FspI TGC'GCA
Cuts at: 3694 3694
Size: 5188
HaeII r_GCGC'y
Cuts at: 1678 2371 4335 1678
Size: 693 1964 2531
Fragments arranged by size:
2531 1964 693
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3829 3861 3903 3935 1373
Size: 32 135 32 2257 32 42 32 2626
Fragments arranged by size:
2626 2257 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2532 2778 669
Size: 988 281 594 246 3079
Fragments arranged by size:
3079 988 594 281 246
HindIII A'AGCT_T
Cuts at: 748 2427 748
Size: 1679 3509
HpaI GTT'AAC
Cuts at: 2778 2778
Size: 5188
KpnI G_GTAC'C
Cuts at: 2513 2513
Size: 5188
MfeI C'AATT_G
Cuts at: 2787 2787
Size: 5188
MluI A'CGCG_T
Cuts at: 5064 5064
Size: 5188
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2211 2437 4302 4486 1305
Size: 906 226 1865 184 2007
Fragments arranged by size:
2007 1865 906 226 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2099 10
Size: 54 1425 343 267 3099
Fragments arranged by size:
3099 1425 343 267 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3146 3505 3664 518
Size: 648 1980 359 159 2042
Fragments arranged by size:
2042 1980 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2356 2604 3281 4429 4674 1606
Size: 750 248 677 1148 245 2120
Fragments arranged by size:
2120 1148 750 677 248 245
NcoI C'CATG_G
Cuts at: 513 1065 2094 513
Size: 552 1029 3607
Fragments arranged by size:
3607 1029 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5188
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5188
NotI GC'GGCC_GC
Cuts at: 2635 2635
Size: 5188
NspI r_CATG'y
Cuts at: 1132 1229 2383 2546 4091 1132
Size: 97 1154 163 1545 2229
Fragments arranged by size:
2229 1545 1154 163 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5188
PciI A'CATG_T
Cuts at: 2379 4087 2379
Size: 1708 3480
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2396 1108
Size: 1288 3900
PmeI GTTT'AAAC
Cuts at: 2492 2492
Size: 5188
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3257 3289 4770 4802 3257
Size: 32 1481 32 3643
Fragments arranged by size:
3643 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5188
PsiI TTA'TAA
Cuts at: 2758 2758
Size: 5188
PstI C_TGCA'G
Cuts at: 830 2113 2262 2540 830
Size: 1283 149 278 3478
Fragments arranged by size:
3478 1283 278 149
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5188
PvuII CAG'CTG
Cuts at: 2356 2356
Size: 5188
SalI G'TCGA_C
Cuts at: 1936 2530 1936
Size: 594 4594
SbfI CC_TGCA'GG
Cuts at: 2540 2540
Size: 5188
ScaI AGT'ACT
Cuts at: 2107 3436 5148 2107
Size: 1329 1712 2147
Fragments arranged by size:
2147 1712 1329
SfcI C'TryA_G
Cuts at: 826 1045 2109 2258 2536 3671 4352 4543 826
Size: 219 1064 149 278 1135 681 191 1471
Fragments arranged by size:
1471 1135 1064 681 278 219 191 149
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5188
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5188
SmaI CCC'GGG
Cuts at: 1872 2515 1872
Size: 643 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3292 4193 4455 820
Size: 197 926 1349 901 262 1553
Fragments arranged by size:
1553 1349 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2979 493
Size: 2486 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5188
SphI G_CATG'C
Cuts at: 1132 2546 1132
Size: 1414 3774
SspI AAT'ATT
Cuts at: 5 52 3112 5
Size: 47 3060 2081
Fragments arranged by size:
3060 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5188
StyI C'CwwG_G
Cuts at: 513 1065 2094 2627 513
Size: 552 1029 533 3074
Fragments arranged by size:
3074 1029 552 533
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3215 3232 3385 3570 4015 325
Size: 1255 1635 17 153 185 445 1498
Fragments arranged by size:
1635 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2105 3434 5146
Size: 274 80 33 51 1443 128 1329 1712
Cuts at: 5146 96
Size: 138
Fragments arranged by size:
1712 1443 1329 274 138 128 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5148 5180 5148
Size: 32 5156
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5188
XbaI T'CTAG_A
Cuts at: 2524 2524
Size: 5188
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5188
XmaI C'CCGG_G
Cuts at: 1870 2513 1870
Size: 643 4545
XmnI GAAnn'nnTTC
Cuts at: 3317 3317
Size: 5188
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2996 276
Size: 53 83 186 936 1462 2468
Fragments arranged by size:
2468 1462 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NspI PasI PciI PflMI
PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI
SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI
SpeI SphI SspI StuI StyI TaqII TatI TstI
Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII
EcoICRI EcoO109I EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI
PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI
SexAI SfiI SfoI SrfI SwaI XcmI