Restriction map for
pFN21AB6943
(Circular) (Six-base) MAPSORT of: pFN21AB6943.seq Check: 7472 from: 1 to: 5254
pFN21AB6943 5254 bp
With 182 enzymes: SgfI *
October 20, 2009 10:42 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3064 278
Size: 53 83 186 936 1528 2468
Fragments arranged by size:
2468 1528 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2597 1937
Size: 660 4594
Acc65I G'GTAC_C
Cuts at: 2575 2575
Size: 5254
AclI AA'CG_TT
Cuts at: 1563 3381 3754 1563
Size: 1818 373 3063
Fragments arranged by size:
3063 1818 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3317 4701 4969 1632
Size: 1685 1384 268 1917
Fragments arranged by size:
1917 1685 1384 268
AfeI AGC'GCT
Cuts at: 2031 2031
Size: 5254
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5057
AflIII A'CryG_T
Cuts at: 1203 2304 4153 5130 1203
Size: 1101 1849 977 1327
Fragments arranged by size:
1849 1327 1101 977
AgeI A'CCGG_T
Cuts at: 4085 4085
Size: 5254
AhdI GACnn_n'nnGTC
Cuts at: 3983 3983
Size: 5254
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5254
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5254
AlwNI CAG_nnn'CTG
Cuts at: 2997 4569 2997
Size: 1572 3682
ApaLI G'TGCA_C
Cuts at: 3311 4467 3311
Size: 1156 4098
ApoI r'AATT_y
Cuts at: 1493 2563 2789 2941 5050 1493
Size: 1070 226 152 2109 1697
Fragments arranged by size:
2109 1697 1070 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3808 160
Size: 872 2776 1606
Fragments arranged by size:
2776 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5254
AvaI C'yCGr_G
Cuts at: 1870 1943 2163 2218 2579 1870
Size: 73 220 55 361 4545
Fragments arranged by size:
4545 361 220 73 55
BamHI G'GATC_C
Cuts at: 2584 2951 2584
Size: 367 4887
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2170 2575 4030 618
Size: 325 217 627 383 405 1455 1842
Fragments arranged by size:
1842 1455 627 405 383 325 217
BanII G_rGCy'C
Cuts at: 1391 2480 2573 1391
Size: 1089 93 4072
Fragments arranged by size:
4072 1089 93
BbeI G_GCGC'C
Cuts at: 2174 2174
Size: 5254
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2504 2536 928
Size: 971 605 32 3646
Fragments arranged by size:
3646 971 605 32
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3445 3479 1903
Size: 34 1508 34 3678
Fragments arranged by size:
3678 1508 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3146 4356 3146
Size: 1210 4044
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5254
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2168 3865 136
Size: 107 122 71 631 605 496 1697 1525
Fragments arranged by size:
1697 1525 631 605 496 122 107 71
BglII A'GATC_T
Cuts at: 5249 5249
Size: 5254
BlpI GC'TnA_GC
Cuts at: 2671 2671
Size: 5254
Bme1580I G_kGCm'C
Cuts at: 1790 3315 4471 1790
Size: 1525 1156 2573
Fragments arranged by size:
2573 1525 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5254
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2985 3943 442
Size: 416 53 83 399 24 1568 958 1753
Fragments arranged by size:
1753 1568 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5254
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2440 2440
Size: 5254
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2111 2150 2379 2385 3914 1239
Size: 872 39 229 6 1529 2579
Fragments arranged by size:
2579 1529 872 229 39 6
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3379 4244 4542 3379
Size: 865 298 4091
Fragments arranged by size:
4091 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3917 882
Size: 617 2418 2219
Fragments arranged by size:
2418 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3045 493
Size: 711 1841 2702
Fragments arranged by size:
2702 1841 711
BsaBI GATnn'nnATC
Cuts at: 5248 5248
Size: 5254
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2171 3061 3443 4078
Size: 53 83 186 936 638 890 382 635
Cuts at: 4078 275
Size: 1451
Fragments arranged by size:
1451 936 890 638 635 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3687 4085 4359 4506 4917 3687
Size: 398 274 147 411 4024
Fragments arranged by size:
4024 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5029
Fragments arranged by size:
5029 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2119 1186
Size: 933 4321
BseYI C'CCAG_C
Cuts at: 2406 4457 4953 2406
Size: 2051 496 2707
Fragments arranged by size:
2707 2051 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2285 1163
Size: 573 549 4132
Fragments arranged by size:
4132 573 549
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2025 2704 3465 4493 1540
Size: 275 186 24 679 761 1028 2301
Fragments arranged by size:
2301 1028 761 679 275 186 24
BsiHKAI G_wGCw'C
Cuts at: 3315 3400 4471 3315
Size: 85 1071 4098
Fragments arranged by size:
4098 1071 85
BsmI GAATG_Cn'
Cuts at: 2765 2858 2765
Size: 93 5161
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2480 2573 3315 3400 4471 1391
Size: 399 690 93 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 690 399 93 85
BspEI T'CCGG_A
Cuts at: 4917 4917
Size: 5254
BspHI T'CATG_A
Cuts at: 3143 4873 3143
Size: 1730 3524
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2609 844
Size: 1765 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3141 1394
Size: 429 1318 3507
Fragments arranged by size:
3507 1318 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3749 3923 65
Size: 1183 2501 174 1396
Fragments arranged by size:
2501 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2191 2198 3898 4085 1700
Size: 110 381 7 1700 187 2869
Fragments arranged by size:
2869 1700 381 187 110 7
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5254
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5254
BssSI C'ACGA_G
Cuts at: 3314 4326 3314
Size: 1012 4242
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5254
BstBI TT'CG_AA
Cuts at: 4058 4058
Size: 5254
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5254
BstYI r'GATC_y
Cuts at: 1972 2584 2951 3336 3353 4805 4891 4903 5249
Size: 612 367 385 17 1452 86 12 346
Cuts at: 5249 1972
Size: 1977
Fragments arranged by size:
1977 1452 612 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3763
Fragments arranged by size:
3763 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4515
Fragments arranged by size:
4515 683 56
BtsI GCAGTG_nn'
Cuts at: 2770 3564 3584 2770
Size: 794 20 4440
Fragments arranged by size:
4440 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5254
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5219
DraI TTT'AAA
Cuts at: 2558 2558
Size: 5254
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4261 809
Size: 507 2945 1802
Fragments arranged by size:
2945 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2022 2701 3590
Size: 54 1425 50 275 18 192 679 889
Cuts at: 3590 5219 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 679 275 192 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2022 2701 1537
Size: 275 210 679 4090
Fragments arranged by size:
4090 679 275 210
EarI CTCTTCn'nnn_
Cuts at: 1353 3184 1353
Size: 1831 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3841 4215 4361 387
Size: 1064 138 2252 374 146 1280
Fragments arranged by size:
2252 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2111 2150 2379 2385 3317 3914 4701
Size: 393 479 39 229 6 932 597 787
Cuts at: 4701 4969 1239
Size: 268 1524
Fragments arranged by size:
1524 932 787 597 479 393 268 229
39 6
EcoO109I rG'GnC_Cy
Cuts at: 2155 2431 2457 2155
Size: 276 26 4952
Fragments arranged by size:
4952 276 26
EcoRI G'AATT_C
Cuts at: 2563 2941 2563
Size: 378 4876
FspI TGC'GCA
Cuts at: 3760 3760
Size: 5254
HaeII r_GCGC'y
Cuts at: 1678 2033 2174 4401 1678
Size: 355 141 2227 2531
Fragments arranged by size:
2531 2227 355 141
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3895 3927 3969 4001 1373
Size: 32 135 32 2323 32 42 32 2626
Fragments arranged by size:
2626 2323 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2598 2844 669
Size: 988 281 660 246 3079
Fragments arranged by size:
3079 988 660 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5254
HpaI GTT'AAC
Cuts at: 2844 2844
Size: 5254
KasI G'GCGC_C
Cuts at: 2170 2170
Size: 5254
KpnI G_GTAC'C
Cuts at: 2579 2579
Size: 5254
MfeI C'AATT_G
Cuts at: 2853 2853
Size: 5254
MluI A'CGCG_T
Cuts at: 5130 5130
Size: 5254
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4368 4552 1305
Size: 3063 184 2007
Fragments arranged by size:
3063 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3432
Fragments arranged by size:
3432 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3212 3571 3730 518
Size: 648 2046 359 159 2042
Fragments arranged by size:
2046 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2670 3347 4495 4740 1606
Size: 1064 677 1148 245 2120
Fragments arranged by size:
2120 1148 1064 677 245
NaeI GCC'GGC
Cuts at: 2193 2200 2193
Size: 7 5247
NarI GG'CG_CC
Cuts at: 2171 2171
Size: 5254
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3763
Fragments arranged by size:
3763 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5254
NgoMIV G'CCGG_C
Cuts at: 2191 2198 2191
Size: 7 5247
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5254
NotI GC'GGCC_GC
Cuts at: 2022 2701 2022
Size: 679 4575
NspI r_CATG'y
Cuts at: 1132 1229 2126 2308 2393 2612 4157 1132
Size: 97 897 182 85 219 1545 2229
Fragments arranged by size:
2229 1545 897 219 182 97 85
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5254
PciI A'CATG_T
Cuts at: 2304 4153 2304
Size: 1849 3405
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5254
PfoI T'CCnGG_A
Cuts at: 2362 2362
Size: 5254
PmeI GTTT'AAAC
Cuts at: 2558 2558
Size: 5254
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3323 3355 4836 4868 3323
Size: 32 1481 32 3709
Fragments arranged by size:
3709 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2155 2431 2457 2155
Size: 276 26 4952
Fragments arranged by size:
4952 276 26
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5254
PsiI TTA'TAA
Cuts at: 2824 2824
Size: 5254
PstI C_TGCA'G
Cuts at: 830 2061 2606 830
Size: 1231 545 3478
Fragments arranged by size:
3478 1231 545
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5254
SalI G'TCGA_C
Cuts at: 1936 2596 1936
Size: 660 4594
SbfI CC_TGCA'GG
Cuts at: 2606 2606
Size: 5254
ScaI AGT'ACT
Cuts at: 3502 5214 3502
Size: 1712 3542
SexAI A'CCwGG_T
Cuts at: 2538 2538
Size: 5254
SfcI C'TryA_G
Cuts at: 826 1045 2057 2602 3737 4418 4609 826
Size: 219 1012 545 1135 681 191 1471
Fragments arranged by size:
1471 1135 1012 681 545 219 191
SfoI GGC'GCC
Cuts at: 2172 2172
Size: 5254
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5254
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5254
SmaI CCC'GGG
Cuts at: 1872 2165 2220 2581 1872
Size: 293 55 361 4545
Fragments arranged by size:
4545 361 293 55
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3358 4259 4521 820
Size: 197 926 1415 901 262 1553
Fragments arranged by size:
1553 1415 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3045 493
Size: 2552 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5254
SphI G_CATG'C
Cuts at: 1132 2126 2393 2612 1132
Size: 994 267 219 3774
Fragments arranged by size:
3774 994 267 219
SspI AAT'ATT
Cuts at: 5 52 2231 3178 5
Size: 47 2179 947 2081
Fragments arranged by size:
2179 2081 947 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5254
StyI C'CwwG_G
Cuts at: 513 1065 2004 2356 2693 513
Size: 552 939 352 337 3074
Fragments arranged by size:
3074 939 552 352 337
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2061 3281 3298 3451 3636 4081 325
Size: 1255 481 1220 17 153 185 445 1498
Fragments arranged by size:
1498 1255 1220 481 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3500 5212 96
Size: 274 80 33 51 1443 1523 1712 138
Fragments arranged by size:
1712 1523 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2517 2549 5214 5246 2517
Size: 32 2665 32 2525
Fragments arranged by size:
2665 2525 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 2540 1316
Size: 1224 4030
XbaI T'CTAG_A
Cuts at: 2080 2590 2080
Size: 510 4744
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2146 2146
Size: 5254
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5254
XmaI C'CCGG_G
Cuts at: 1870 2163 2218 2579 1870
Size: 293 55 361 4545
Fragments arranged by size:
4545 361 293 55
XmnI GAAnn'nnTTC
Cuts at: 3383 3383
Size: 5254
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3062 276
Size: 53 83 186 936 1528 2468
Fragments arranged by size:
2468 1528 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AfeI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI
BtsI ClaI CspCI DraI DrdI EaeI EagI EarI
EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII
HindIII HpaI KasI KpnI MfeI MluI MmeI MscI
MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI
NotI NspI PasI PciI PflMI PfoI PmeI PpiI
PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI
SexAI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI
SpeI SphI SspI StuI StyI TaqII TatI TstI
Tth111I XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AloI ApaI AscI AvrII BaeI BbvCI BfrBI
Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI
EcoNI EcoRV FalI FseI FspAI NruI NsiI PacI
PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII
SanDI SapI SfiI SrfI SwaI