Restriction map for
pFN21AB6927
(Circular) (Six-base) MAPSORT of: pFN21AB6927.seq Check: 2742 from: 1 to: 5326
pFN21AB6927 5326 bp
With 182 enzymes: SgfI *
October 20, 2009 10:42 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3136 278
Size: 53 83 186 936 1600 2468
Fragments arranged by size:
2468 1600 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2669 1937
Size: 732 4594
Acc65I G'GTAC_C
Cuts at: 2647 2647
Size: 5326
AclI AA'CG_TT
Cuts at: 1563 3453 3826 1563
Size: 1890 373 3063
Fragments arranged by size:
3063 1890 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2504 3389 4773 5041 1632
Size: 872 885 1384 268 1917
Fragments arranged by size:
1917 1384 885 872 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5129
AflIII A'CryG_T
Cuts at: 1203 2043 4225 5202 1203
Size: 840 2182 977 1327
Fragments arranged by size:
2182 1327 977 840
AgeI A'CCGG_T
Cuts at: 4157 4157
Size: 5326
AhdI GACnn_n'nnGTC
Cuts at: 4055 4055
Size: 5326
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5326
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5326
AloI GAACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2540 2572 2540
Size: 32 5294
AlwNI CAG_nnn'CTG
Cuts at: 2107 2243 3069 4641 2107
Size: 136 826 1572 2792
Fragments arranged by size:
2792 1572 826 136
ApaLI G'TGCA_C
Cuts at: 3383 4539 3383
Size: 1156 4170
ApoI r'AATT_y
Cuts at: 1493 2635 2861 3013 5122 1493
Size: 1142 226 152 2109 1697
Fragments arranged by size:
2109 1697 1142 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3880 160
Size: 872 2848 1606
Fragments arranged by size:
2848 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5326
AvaI C'yCGr_G
Cuts at: 1870 1943 2049 2066 2364 2619 2651 1870
Size: 73 106 17 298 255 32 4545
Fragments arranged by size:
4545 298 255 106 73 32 17
AvrII C'CTAG_G
Cuts at: 2311 2311
Size: 5326
BamHI G'GATC_C
Cuts at: 2656 3023 2656
Size: 367 4959
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2583 2647 4102 618
Size: 325 217 627 796 64 1455 1842
Fragments arranged by size:
1842 1455 796 627 325 217 64
BanII G_rGCy'C
Cuts at: 1391 2064 2218 2501 2645 1391
Size: 673 154 283 144 4072
Fragments arranged by size:
4072 673 283 154 144
BbeI G_GCGC'C
Cuts at: 2587 2587
Size: 5326
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4355
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3517 3551 1903
Size: 34 1580 34 3678
Fragments arranged by size:
3678 1580 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3218 4428 3218
Size: 1210 4116
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5326
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2029 2240 2400
Size: 107 122 71 631 605 357 211 160
Cuts at: 2400 3937 136
Size: 1537 1525
Fragments arranged by size:
1537 1525 631 605 357 211 160 122
107 71
BglII A'GATC_T
Cuts at: 5321 5321
Size: 5326
BlpI GC'TnA_GC
Cuts at: 2743 2743
Size: 5326
Bme1580I G_kGCm'C
Cuts at: 1790 3387 4543 1790
Size: 1597 1156 2573
Fragments arranged by size:
2573 1597 1156
BmgBI CAC'GTC
Cuts at: 1318 2044 1318
Size: 726 4600
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3057 4015 442
Size: 416 53 83 399 24 1640 958 1753
Fragments arranged by size:
1753 1640 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5326
BplI GAGnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2362 2362
Size: 5326
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2054 2060 2102 2558 3986 1239
Size: 815 6 42 456 1428 2579
Fragments arranged by size:
2579 1428 815 456 42 6
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2390 3451 4316 4614 2390
Size: 1061 865 298 3102
Fragments arranged by size:
3102 1061 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3989 882
Size: 617 2490 2219
Fragments arranged by size:
2490 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3117 493
Size: 711 1913 2702
Fragments arranged by size:
2702 1913 711
BsaBI GATnn'nnATC
Cuts at: 5320 5320
Size: 5326
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2584 3133 3515 4150
Size: 53 83 186 936 1051 549 382 635
Cuts at: 4150 275
Size: 1451
Fragments arranged by size:
1451 1051 936 635 549 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3759 4157 4431 4578 4989 3759
Size: 398 274 147 411 4096
Fragments arranged by size:
4096 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2540 2570 1178
Size: 30 165 30 1137 30 3934
Fragments arranged by size:
3934 1137 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2054 2555 1186
Size: 868 501 3957
Fragments arranged by size:
3957 868 501
BseYI C'CCAG_C
Cuts at: 2026 4529 5025 2026
Size: 2503 496 2327
Fragments arranged by size:
2503 2327 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4753
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2776 3537 4565 1540
Size: 275 186 775 761 1028 2301
Fragments arranged by size:
2301 1028 775 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2064 3387 3472 4543 2064
Size: 1323 85 1071 2847
Fragments arranged by size:
2847 1323 1071 85
BsmI GAATG_Cn'
Cuts at: 2837 2930 2837
Size: 93 5233
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2064 2218 2501 2645 3387 3472 4543
Size: 399 274 154 283 144 742 85 1071
Cuts at: 4543 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 399 283 274 154 144
85
BspEI T'CCGG_A
Cuts at: 4989 4989
Size: 5326
BspHI T'CATG_A
Cuts at: 3215 4945 3215
Size: 1730 3596
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2681 844
Size: 1837 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2038 2071 3213 1394
Size: 429 215 33 1142 3507
Fragments arranged by size:
3507 1142 429 215 33
BsrDI GCAATG_nn'
Cuts at: 65 1248 3821 3995 65
Size: 1183 2573 174 1396
Fragments arranged by size:
2573 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2195 2580 3970 4157 1700
Size: 110 385 385 1390 187 2869
Fragments arranged by size:
2869 1390 385 385 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5326
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5326
BssSI C'ACGA_G
Cuts at: 3386 4398 3386
Size: 1012 4314
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2107 794
Size: 1313 4013
BstBI TT'CG_AA
Cuts at: 4130 4130
Size: 5326
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5326
BstXI CCAn_nnnn'nTGG
Cuts at: 2284 2284
Size: 5326
BstYI r'GATC_y
Cuts at: 1972 2208 2656 3023 3408 3425 4877 4963 4975
Size: 236 448 367 385 17 1452 86 12
Cuts at: 4975 5321 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 448 385 367 346 236 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2395 513
Size: 552 939 391 3444
Fragments arranged by size:
3444 939 552 391
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4587
Fragments arranged by size:
4587 683 56
BtsI GCAGTG_nn'
Cuts at: 2842 3636 3656 2842
Size: 794 20 4512
Fragments arranged by size:
4512 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5326
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5291
DraI TTT'AAA
Cuts at: 2630 2630
Size: 5326
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4333 809
Size: 507 3017 1802
Fragments arranged by size:
3017 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2773 3662 5291
Size: 54 1425 50 275 18 943 889 1629
Cuts at: 5291 8
Size: 43
Fragments arranged by size:
1629 1425 943 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2773 1537
Size: 275 961 4090
Fragments arranged by size:
4090 961 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3256 1353
Size: 1903 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3913 4287 4433 387
Size: 1064 138 2324 374 146 1280
Fragments arranged by size:
2324 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2062 2062
Size: 5326
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2054 2060 2102 2504 2558 3389 3986
Size: 393 422 6 42 402 54 831 597
Cuts at: 3986 4773 5041 1239
Size: 787 268 1524
Fragments arranged by size:
1524 831 787 597 422 402 393 268
54 42 6
EcoO109I rG'GnC_Cy
Cuts at: 2113 2308 2113
Size: 195 5131
EcoRI G'AATT_C
Cuts at: 2635 3013 2635
Size: 378 4948
FspI TGC'GCA
Cuts at: 3832 3832
Size: 5326
HaeII r_GCGC'y
Cuts at: 1678 2205 2587 4473 1678
Size: 527 382 1886 2531
Fragments arranged by size:
2531 1886 527 382
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3967 3999 4041 4073 1373
Size: 32 135 32 2395 32 42 32 2626
Fragments arranged by size:
2626 2395 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2670 2916 669
Size: 988 281 732 246 3079
Fragments arranged by size:
3079 988 732 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5326
HpaI GTT'AAC
Cuts at: 2916 2916
Size: 5326
KasI G'GCGC_C
Cuts at: 2583 2583
Size: 5326
KpnI G_GTAC'C
Cuts at: 2651 2651
Size: 5326
MfeI C'AATT_G
Cuts at: 2925 2925
Size: 5326
MluI A'CGCG_T
Cuts at: 5202 5202
Size: 5326
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4440 4624 1305
Size: 3135 184 2007
Fragments arranged by size:
3135 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3504
Fragments arranged by size:
3504 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3284 3643 3802 518
Size: 648 2118 359 159 2042
Fragments arranged by size:
2118 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2026 2085 2742 3419 4567 4812 1606
Size: 420 59 657 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 657 420 245 59
NaeI GCC'GGC
Cuts at: 2582 2582
Size: 5326
NarI GG'CG_CC
Cuts at: 2584 2584
Size: 5326
NcoI C'CATG_G
Cuts at: 513 1065 2004 2395 513
Size: 552 939 391 3444
Fragments arranged by size:
3444 939 552 391
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5326
NgoMIV G'CCGG_C
Cuts at: 2580 2580
Size: 5326
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5326
NotI GC'GGCC_GC
Cuts at: 2773 2773
Size: 5326
NspI r_CATG'y
Cuts at: 1132 1229 2684 4229 1132
Size: 97 1455 1545 2229
Fragments arranged by size:
2229 1545 1455 97
PasI CC'CwG_GG
Cuts at: 1348 2277 2375 2494 1348
Size: 929 98 119 4180
Fragments arranged by size:
4180 929 119 98
PciI A'CATG_T
Cuts at: 4225 4225
Size: 5326
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5326
PmeI GTTT'AAAC
Cuts at: 2630 2630
Size: 5326
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 2540 2572 3395 3427 4908 4940 2540
Size: 32 823 32 1481 32 2926
Fragments arranged by size:
2926 1481 823 32 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5326
PsiI TTA'TAA
Cuts at: 2896 2896
Size: 5326
PspXI vC'TCGA_Gb
Cuts at: 2066 2066
Size: 5326
PstI C_TGCA'G
Cuts at: 830 2112 2133 2678 830
Size: 1282 21 545 3478
Fragments arranged by size:
3478 1282 545 21
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5326
SacI G_AGCT'C
Cuts at: 2064 2064
Size: 5326
SalI G'TCGA_C
Cuts at: 1936 2668 1936
Size: 732 4594
SbfI CC_TGCA'GG
Cuts at: 2678 2678
Size: 5326
ScaI AGT'ACT
Cuts at: 3574 5286 3574
Size: 1712 3614
SfcI C'TryA_G
Cuts at: 826 1045 2108 2129 2674 3809 4490 4681 826
Size: 219 1063 21 545 1135 681 191 1471
Fragments arranged by size:
1471 1135 1063 681 545 219 191 21
SfoI GGC'GCC
Cuts at: 2585 2585
Size: 5326
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5326
SgrAI Cr'CCGG_yG
Cuts at: 1700 2580 1700
Size: 880 4446
SmaI CCC'GGG
Cuts at: 1872 2051 2366 2653 1872
Size: 179 315 287 4545
Fragments arranged by size:
4545 315 287 179
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2066 2405 2619 3430 4331 4593
Size: 197 926 123 339 214 811 901 262
Cuts at: 4593 820
Size: 1553
Fragments arranged by size:
1553 926 901 811 339 262 214 197
123
SnaBI TAC'GTA
Cuts at: 493 3117 493
Size: 2624 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5326
SphI G_CATG'C
Cuts at: 1132 2684 1132
Size: 1552 3774
SspI AAT'ATT
Cuts at: 5 52 3250 5
Size: 47 3198 2081
Fragments arranged by size:
3198 2081 47
StuI AGG'CCT
Cuts at: 1517 2403 1517
Size: 886 4440
StyI C'CwwG_G
Cuts at: 513 1065 2004 2229 2311 2395 2610 2765 513
Size: 552 939 225 82 84 215 155 3074
Fragments arranged by size:
3074 939 552 225 215 155 84 82
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2318 3353 3370 3523 3708 4153 325
Size: 1255 738 1035 17 153 185 445 1498
Fragments arranged by size:
1498 1255 1035 738 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3572 5284 96
Size: 274 80 33 51 1443 1595 1712 138
Fragments arranged by size:
1712 1595 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5286 5318 5286
Size: 32 5294
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5326
XbaI T'CTAG_A
Cuts at: 2662 2662
Size: 5326
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2011 2236 2011
Size: 225 5101
XhoI C'TCGA_G
Cuts at: 1943 2066 2619 1943
Size: 123 553 4650
Fragments arranged by size:
4650 553 123
XmaI C'CCGG_G
Cuts at: 1870 2049 2364 2651 1870
Size: 179 315 287 4545
Fragments arranged by size:
4545 315 287 179
XmnI GAAnn'nnTTC
Cuts at: 3455 3455
Size: 5326
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3134 276
Size: 53 83 186 936 1600 2468
Fragments arranged by size:
2468 1600 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AloI AlwNI ApaLI ApoI AseI
AsiSI AvaI AvrII BamHI BanI BanII BbeI BbsI
BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI
BmrI BmtI BplI BpmI BpuEI BsaI BsaAI BsaBI
BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI
BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI
BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI
BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI
EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI
HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI
MluI MmeI MscI MslI MspA1I NaeI NarI NcoI
NdeI NgoMIV NheI NotI NspI PasI PciI PflMI
PmeI PpiI PshAI PsiI PspXI PstI PvuI SacI
SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AarI AfeI ApaI AscI BaeI BbvCI BfrBI Bpu10I
BsiWI BsmBI BstZ17I Bsu36I DraIII EcoNI EcoRV FalI
FseI FspAI NruI NsiI PacI PfoI PmlI PpuMI
PspOMI PsrI PvuII RsrII SacII SanDI SapI SexAI
SfiI SrfI SwaI