Restriction map for
pFN21AB6919
(Circular) (Six-base) MAPSORT of: pFN21AB6919.seq Check: 3045 from: 1 to: 5356
pFN21AB6919 5356 bp
With 182 enzymes: SgfI *
October 20, 2009 10:41 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2476 2476
Size: 5356
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3166 278
Size: 53 83 186 936 1630 2468
Fragments arranged by size:
2468 1630 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2699 1937
Size: 762 4594
Acc65I G'GTAC_C
Cuts at: 2058 2677 2058
Size: 619 4737
AclI AA'CG_TT
Cuts at: 1563 3483 3856 1563
Size: 1920 373 3063
Fragments arranged by size:
3063 1920 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3419 4803 5071 1632
Size: 1787 1384 268 1917
Fragments arranged by size:
1917 1787 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5159
AflIII A'CryG_T
Cuts at: 1203 4255 5232 1203
Size: 3052 977 1327
Fragments arranged by size:
3052 1327 977
AgeI A'CCGG_T
Cuts at: 4187 4187
Size: 5356
AhdI GACnn_n'nnGTC
Cuts at: 4085 4085
Size: 5356
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5356
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5356
AlwNI CAG_nnn'CTG
Cuts at: 2027 3099 4671 2027
Size: 1072 1572 2712
Fragments arranged by size:
2712 1572 1072
ApaLI G'TGCA_C
Cuts at: 3413 4569 3413
Size: 1156 4200
ApoI r'AATT_y
Cuts at: 1493 2665 2891 3043 5152 1493
Size: 1172 226 152 2109 1697
Fragments arranged by size:
2109 1697 1172 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3910 160
Size: 872 2878 1606
Fragments arranged by size:
2878 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5356
AvaI C'yCGr_G
Cuts at: 1870 1943 2681 1870
Size: 73 738 4545
Fragments arranged by size:
4545 738 73
BamHI G'GATC_C
Cuts at: 2046 2686 3053 2046
Size: 640 367 4349
Fragments arranged by size:
4349 640 367
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2058 2677 4132 618
Size: 325 217 627 271 619 1455 1842
Fragments arranged by size:
1842 1455 627 619 325 271 217
BanII G_rGCy'C
Cuts at: 1391 2346 2675 1391
Size: 955 329 4072
Fragments arranged by size:
4072 955 329
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2156 928
Size: 971 257 4128
Fragments arranged by size:
4128 971 257
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3547 3581 1903
Size: 34 1610 34 3678
Fragments arranged by size:
3678 1610 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2567 3248 4458 2567
Size: 681 1210 3465
Fragments arranged by size:
3465 1210 681
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5356
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3967 136
Size: 107 122 71 631 605 2295 1525
Fragments arranged by size:
2295 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2211 5351 2211
Size: 3140 2216
BlpI GC'TnA_GC
Cuts at: 2340 2773 2340
Size: 433 4923
Bme1580I G_kGCm'C
Cuts at: 1790 2365 3417 4573 1790
Size: 575 1052 1156 2573
Fragments arranged by size:
2573 1156 1052 575
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5356
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2138 3087 4045
Size: 416 53 83 399 24 721 949 958
Cuts at: 4045 442
Size: 1753
Fragments arranged by size:
1753 958 949 721 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5356
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2177 2454 4016 1239
Size: 938 277 1562 2579
Fragments arranged by size:
2579 1562 938 277
Bpu10I CC'TnA_GC
Cuts at: 2298 2298
Size: 5356
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2330 3481 4346 4644 2330
Size: 1151 865 298 3042
Fragments arranged by size:
3042 1151 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4019 882
Size: 617 2520 2219
Fragments arranged by size:
2520 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3147 493
Size: 711 1943 2702
Fragments arranged by size:
2702 1943 711
BsaBI GATnn'nnATC
Cuts at: 5350 5350
Size: 5356
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3163 3545 4180 275
Size: 53 83 186 936 1630 382 635 1451
Fragments arranged by size:
1630 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3789 4187 4461 4608 5019 3789
Size: 398 274 147 411 4126
Fragments arranged by size:
4126 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5131
Fragments arranged by size:
5131 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5356
BseYI C'CCAG_C
Cuts at: 4559 5055 4559
Size: 496 4860
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2324 1163
Size: 573 588 4195
Fragments arranged by size:
4195 588 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2806 3567 4595 1540
Size: 275 186 805 761 1028 2301
Fragments arranged by size:
2301 1028 805 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2346 3417 3502 4573 2346
Size: 1071 85 1071 3129
Fragments arranged by size:
3129 1071 1071 85
BsmI GAATG_Cn'
Cuts at: 2417 2867 2960 2417
Size: 450 93 4813
Fragments arranged by size:
4813 450 93
BsmBI CGTCTCn'nnnn_
Cuts at: 2612 2612
Size: 5356
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2346 2365 2675 3417 3502 4573 1391
Size: 399 556 19 310 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 556 399 310 85 19
BspEI T'CCGG_A
Cuts at: 5019 5019
Size: 5356
BspHI T'CATG_A
Cuts at: 3245 4975 3245
Size: 1730 3626
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2070 2476 2711 844
Size: 1226 406 235 3489
Fragments arranged by size:
3489 1226 406 235
BsrBI CCG'CTC
Cuts at: 1394 1823 3243 1394
Size: 429 1420 3507
Fragments arranged by size:
3507 1420 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3851 4025 65
Size: 1183 2603 174 1396
Fragments arranged by size:
2603 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2076 4000 4187 1700
Size: 110 266 1924 187 2869
Fragments arranged by size:
2869 1924 266 187 110
BsrGI T'GTAC_A
Cuts at: 96 2490 96
Size: 2394 2962
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5356
BssSI C'ACGA_G
Cuts at: 3416 4428 3416
Size: 1012 4344
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2027 2311 794
Size: 1233 284 3839
Fragments arranged by size:
3839 1233 284
BstBI TT'CG_AA
Cuts at: 4160 4160
Size: 5356
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5356
BstYI r'GATC_y
Cuts at: 1972 2046 2211 2686 3053 3438 3455 4907 4993
Size: 74 165 475 367 385 17 1452 86
Cuts at: 4993 5005 5351 1972
Size: 12 346 1977
Fragments arranged by size:
1977 1452 475 385 367 346 165 86
74 17 12
Bsu36I CC'TnA_GG
Cuts at: 2054 2054
Size: 5356
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4804
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4617
Fragments arranged by size:
4617 683 56
BtsI GCAGTG_nn'
Cuts at: 2292 2872 3666 3686 2292
Size: 580 794 20 3962
Fragments arranged by size:
3962 794 580 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5356
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5321
DraI TTT'AAA
Cuts at: 2660 2660
Size: 5356
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2264 4363 809
Size: 507 948 2099 1802
Fragments arranged by size:
2099 1802 948 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2803 3692 5321
Size: 54 1425 50 275 18 973 889 1629
Cuts at: 5321 8
Size: 43
Fragments arranged by size:
1629 1425 973 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2803 1537
Size: 275 991 4090
Fragments arranged by size:
4090 991 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2469 2522 2528 3286 1353
Size: 1116 53 6 758 3423
Fragments arranged by size:
3423 1116 758 53 6
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3943 4317 4463 387
Size: 1064 138 2354 374 146 1280
Fragments arranged by size:
2354 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2344 2344
Size: 5356
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2177 2454 3419 4016 4803 5071 1239
Size: 393 545 277 965 597 787 268 1524
Fragments arranged by size:
1524 965 787 597 545 393 277 268
EcoRI G'AATT_C
Cuts at: 2665 3043 2665
Size: 378 4978
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2614 2614
Size: 5356
FspI TGC'GCA
Cuts at: 3862 3862
Size: 5356
HaeII r_GCGC'y
Cuts at: 1678 4503 1678
Size: 2825 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3997 4029 4071 4103 1373
Size: 32 135 32 2425 32 42 32 2626
Fragments arranged by size:
2626 2425 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2700 2946 669
Size: 988 281 762 246 3079
Fragments arranged by size:
3079 988 762 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5356
HpaI GTT'AAC
Cuts at: 2946 2946
Size: 5356
KpnI G_GTAC'C
Cuts at: 2062 2681 2062
Size: 619 4737
MfeI C'AATT_G
Cuts at: 2955 2955
Size: 5356
MluI A'CGCG_T
Cuts at: 5232 5232
Size: 5356
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4470 4654 1305
Size: 3165 184 2007
Fragments arranged by size:
3165 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3534
Fragments arranged by size:
3534 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3314 3673 3832 518
Size: 648 2148 359 159 2042
Fragments arranged by size:
2148 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2116 2164 2772 3449 4597 4842 1606
Size: 510 48 608 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 608 510 245 48
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4804
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5356
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5356
NotI GC'GGCC_GC
Cuts at: 2803 2803
Size: 5356
NspI r_CATG'y
Cuts at: 1132 1229 2714 4259 1132
Size: 97 1485 1545 2229
Fragments arranged by size:
2229 1545 1485 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5356
PciI A'CATG_T
Cuts at: 4255 4255
Size: 5356
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5356
PfoI T'CCnGG_A
Cuts at: 2394 2394
Size: 5356
PmeI GTTT'AAAC
Cuts at: 2660 2660
Size: 5356
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3425 3457 4938 4970 3425
Size: 32 1481 32 3811
Fragments arranged by size:
3811 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5356
PsiI TTA'TAA
Cuts at: 2926 2926
Size: 5356
PsrI GAACnnnnnnTACnnnnnnn_nnnnn'
Cuts at: 2066 2098 2066
Size: 32 5324
PstI C_TGCA'G
Cuts at: 830 2067 2708 830
Size: 1237 641 3478
Fragments arranged by size:
3478 1237 641
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5356
PvuII CAG'CTG
Cuts at: 2164 2164
Size: 5356
SacI G_AGCT'C
Cuts at: 2346 2346
Size: 5356
SalI G'TCGA_C
Cuts at: 1936 2698 1936
Size: 762 4594
SbfI CC_TGCA'GG
Cuts at: 2067 2708 2067
Size: 641 4715
ScaI AGT'ACT
Cuts at: 2510 3604 5316 2510
Size: 1094 1712 2550
Fragments arranged by size:
2550 1712 1094
SfcI C'TryA_G
Cuts at: 826 1045 2063 2083 2111 2422 2544 2704 3839
Size: 219 1018 20 28 311 122 160 1135
Cuts at: 3839 4520 4711 826
Size: 681 191 1471
Fragments arranged by size:
1471 1135 1018 681 311 219 191 160
122 28 20
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5356
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5356
SmaI CCC'GGG
Cuts at: 1872 2683 1872
Size: 811 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2345 3460 4361 4623 820
Size: 197 926 402 1115 901 262 1553
Fragments arranged by size:
1553 1115 926 901 402 262 197
SnaBI TAC'GTA
Cuts at: 493 3147 493
Size: 2654 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5356
SphI G_CATG'C
Cuts at: 1132 2714 1132
Size: 1582 3774
SspI AAT'ATT
Cuts at: 5 52 3280 5
Size: 47 3228 2081
Fragments arranged by size:
3228 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5356
StyI C'CwwG_G
Cuts at: 513 1065 2795 513
Size: 552 1730 3074
Fragments arranged by size:
3074 1730 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3383 3400 3553 3738 4183 325
Size: 1255 1803 17 153 185 445 1498
Fragments arranged by size:
1803 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2490 2508 3602
Size: 274 80 33 51 1443 513 18 1094
Cuts at: 3602 5314 96
Size: 1712 138
Fragments arranged by size:
1712 1443 1094 513 274 138 80 51
33 18
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5316 5348 5316
Size: 32 5324
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5356
XbaI T'CTAG_A
Cuts at: 2692 2692
Size: 5356
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5356
XmaI C'CCGG_G
Cuts at: 1870 2681 1870
Size: 811 4545
XmnI GAAnn'nnTTC
Cuts at: 2594 3485 2594
Size: 891 4465
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3164 276
Size: 53 83 186 936 1630 2468
Fragments arranged by size:
2468 1630 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI
AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI
BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI
EarI EciI EcoICRI Eco57MI EcoRI FalI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI
PsrI PstI PvuI PvuII SacI SalI SbfI ScaI
SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI
SspI StuI StyI TaqII TatI TstI Tth111I XbaI
XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI
BfrBI BplI BsiWI BstXI BstZ17I DraIII EcoNI EcoO109I
EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PmlI PpuMI PspOMI PspXI RsrII SacII
SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI