Restriction map for
pFN21AB6839
(Circular) (Six-base) MAPSORT of: pFN21AB6839.seq Check: 9899 from: 1 to: 5221
pFN21AB6839 5221 bp
With 182 enzymes: SgfI *
October 20, 2009 10:43 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3031 278
Size: 53 83 186 936 1495 2468
Fragments arranged by size:
2468 1495 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2564 1937
Size: 627 4594
Acc65I G'GTAC_C
Cuts at: 2542 2542
Size: 5221
AclI AA'CG_TT
Cuts at: 1563 3348 3721 1563
Size: 1785 373 3063
Fragments arranged by size:
3063 1785 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2328 3284 4668 4936 1632
Size: 696 956 1384 268 1917
Fragments arranged by size:
1917 1384 956 696 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5024
AflIII A'CryG_T
Cuts at: 1203 4120 5097 1203
Size: 2917 977 1327
Fragments arranged by size:
2917 1327 977
AgeI A'CCGG_T
Cuts at: 4052 4052
Size: 5221
AhdI GACnn_n'nnGTC
Cuts at: 3950 3950
Size: 5221
AleI CACnn'nnGTG
Cuts at: 1166 2309 1166
Size: 1143 4078
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5221
AlwNI CAG_nnn'CTG
Cuts at: 2964 4536 2964
Size: 1572 3649
ApaLI G'TGCA_C
Cuts at: 3278 4434 3278
Size: 1156 4065
ApoI r'AATT_y
Cuts at: 1493 2250 2530 2756 2908 5017 1493
Size: 757 280 226 152 2109 1697
Fragments arranged by size:
2109 1697 757 280 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3775 160
Size: 872 2743 1606
Fragments arranged by size:
2743 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5221
AvaI C'yCGr_G
Cuts at: 1870 1943 2168 2546 1870
Size: 73 225 378 4545
Fragments arranged by size:
4545 378 225 73
BamHI G'GATC_C
Cuts at: 2551 2918 2551
Size: 367 4854
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2459 2542 3997 618
Size: 325 217 627 672 83 1455 1842
Fragments arranged by size:
1842 1455 672 627 325 217 83
BanII G_rGCy'C
Cuts at: 1391 2169 2504 2540 1391
Size: 778 335 36 4072
Fragments arranged by size:
4072 778 335 36
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2325 2379 928
Size: 971 426 54 3770
Fragments arranged by size:
3770 971 426 54
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2449 2483 3412 3446 1903
Size: 34 512 34 929 34 3678
Fragments arranged by size:
3678 929 512 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3113 4323 3113
Size: 1210 4011
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5221
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3832 136
Size: 107 122 71 631 605 2160 1525
Fragments arranged by size:
2160 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5216 5216
Size: 5221
BlpI GC'TnA_GC
Cuts at: 2638 2638
Size: 5221
Bme1580I G_kGCm'C
Cuts at: 1790 3282 4438 1790
Size: 1492 1156 2573
Fragments arranged by size:
2573 1492 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5221
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2332 2459 2952
Size: 416 53 83 399 24 915 127 493
Cuts at: 2952 3910 442
Size: 958 1753
Fragments arranged by size:
1753 958 915 493 416 399 127 83
53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5221
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2172 2238 3881 1239
Size: 933 66 1643 2579
Fragments arranged by size:
2579 1643 933 66
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2000 3346 4211 4509 2000
Size: 1346 865 298 2712
Fragments arranged by size:
2712 1346 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3884 882
Size: 617 2385 2219
Fragments arranged by size:
2385 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3012 493
Size: 711 1808 2702
Fragments arranged by size:
2702 1808 711
BsaBI GATnn'nnATC
Cuts at: 5215 5215
Size: 5221
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2376 3028 3410 4045
Size: 53 83 186 936 843 652 382 635
Cuts at: 4045 275
Size: 1451
Fragments arranged by size:
1451 936 843 652 635 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3654 4052 4326 4473 4884 3654
Size: 398 274 147 411 3991
Fragments arranged by size:
3991 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4996
Fragments arranged by size:
4996 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2111 2114 2169 2186 2189 2225 1186
Size: 925 3 55 17 3 36 4182
Fragments arranged by size:
4182 925 55 36 17 3 3
BseYI C'CCAG_C
Cuts at: 4424 4920 4424
Size: 496 4725
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2429 1163
Size: 573 693 3955
Fragments arranged by size:
3955 693 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2671 3432 4460 1540
Size: 275 186 670 761 1028 2301
Fragments arranged by size:
2301 1028 761 670 275 186
BsiHKAI G_wGCw'C
Cuts at: 2298 2504 3282 3367 4438 2298
Size: 206 778 85 1071 3081
Fragments arranged by size:
3081 1071 778 206 85
BsmI GAATG_Cn'
Cuts at: 2732 2825 2732
Size: 93 5128
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2169 2298 2504 2540 3282 3367 4438
Size: 399 379 129 206 36 742 85 1071
Cuts at: 4438 1391
Size: 2174
Fragments arranged by size:
2174 1071 742 399 379 206 129 85
36
BspEI T'CCGG_A
Cuts at: 4884 4884
Size: 5221
BspHI T'CATG_A
Cuts at: 3110 4840 3110
Size: 1730 3491
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2576 844
Size: 1732 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3108 1394
Size: 429 1285 3507
Fragments arranged by size:
3507 1285 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3716 3890 65
Size: 1183 2468 174 1396
Fragments arranged by size:
2468 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3865 4052 1700
Size: 110 2055 187 2869
Fragments arranged by size:
2869 2055 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5221
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5221
BssSI C'ACGA_G
Cuts at: 2111 3281 4293 2111
Size: 1170 1012 3039
Fragments arranged by size:
3039 1170 1012
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5221
BstBI TT'CG_AA
Cuts at: 4025 4025
Size: 5221
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5221
BstXI CCAn_nnnn'nTGG
Cuts at: 2139 2139
Size: 5221
BstYI r'GATC_y
Cuts at: 1972 2551 2918 3303 3320 4772 4858 4870 5216
Size: 579 367 385 17 1452 86 12 346
Cuts at: 5216 1972
Size: 1977
Fragments arranged by size:
1977 1452 579 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4669
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4482
Fragments arranged by size:
4482 683 56
BtsI GCAGTG_nn'
Cuts at: 2737 3531 3551 2737
Size: 794 20 4407
Fragments arranged by size:
4407 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5221
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5186
DraI TTT'AAA
Cuts at: 2365 2525 2365
Size: 160 5061
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4228 809
Size: 507 2912 1802
Fragments arranged by size:
2912 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2472 2668 3557
Size: 54 1425 50 275 18 642 196 889
Cuts at: 3557 5186 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 642 275 196 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2668 1537
Size: 275 856 4090
Fragments arranged by size:
4090 856 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2345 3151 1353
Size: 992 806 3423
Fragments arranged by size:
3423 992 806
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3808 4182 4328 387
Size: 1064 138 2219 374 146 1280
Fragments arranged by size:
2219 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2502 2502
Size: 5221
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2172 2238 2328 3284 3881 4668 4936
Size: 393 540 66 90 956 597 787 268
Cuts at: 4936 1239
Size: 1524
Fragments arranged by size:
1524 956 787 597 540 393 268 90
66
EcoNI CCTnn'n_nnAGG
Cuts at: 2154 2154
Size: 5221
EcoRI G'AATT_C
Cuts at: 2530 2908 2530
Size: 378 4843
FspI TGC'GCA
Cuts at: 3727 3727
Size: 5221
HaeII r_GCGC'y
Cuts at: 1678 4368 1678
Size: 2690 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2107 2130 2139 2162 3862
Size: 32 135 32 535 23 9 23 1700
Cuts at: 3862 3894 3936 3968 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1700 535 135 42 32 32 32
32 23 23 9
HincII GTy'rAC
Cuts at: 669 1657 1938 2338 2565 2811 669
Size: 988 281 400 227 246 3079
Fragments arranged by size:
3079 988 400 281 246 227
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5221
HpaI GTT'AAC
Cuts at: 2338 2811 2338
Size: 473 4748
KpnI G_GTAC'C
Cuts at: 2546 2546
Size: 5221
MfeI C'AATT_G
Cuts at: 2820 2820
Size: 5221
MluI A'CGCG_T
Cuts at: 5097 5097
Size: 5221
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2227 4335 4519 1305
Size: 922 2108 184 2007
Fragments arranged by size:
2108 2007 922 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2474 10
Size: 54 1425 343 642 2757
Fragments arranged by size:
2757 1425 642 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2074 2309 2384 3179 3538 3697 518
Size: 648 908 235 75 795 359 159 2042
Fragments arranged by size:
2042 908 795 648 359 235 159 75
MspA1I CmG'CkG
Cuts at: 1606 2637 3314 4462 4707 1606
Size: 1031 677 1148 245 2120
Fragments arranged by size:
2120 1148 1031 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4669
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5221
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5221
NotI GC'GGCC_GC
Cuts at: 2668 2668
Size: 5221
NspI r_CATG'y
Cuts at: 1132 1229 2073 2579 4124 1132
Size: 97 844 506 1545 2229
Fragments arranged by size:
2229 1545 844 506 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5221
PciI A'CATG_T
Cuts at: 4120 4120
Size: 5221
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5221
PmeI GTTT'AAAC
Cuts at: 2525 2525
Size: 5221
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3290 3322 4803 4835 3290
Size: 32 1481 32 3676
Fragments arranged by size:
3676 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 2285 1613
Size: 672 4549
PsiI TTA'TAA
Cuts at: 2791 2791
Size: 5221
PstI C_TGCA'G
Cuts at: 830 2394 2573 830
Size: 1564 179 3478
Fragments arranged by size:
3478 1564 179
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5221
SacI G_AGCT'C
Cuts at: 2504 2504
Size: 5221
SalI G'TCGA_C
Cuts at: 1936 2563 1936
Size: 627 4594
SbfI CC_TGCA'GG
Cuts at: 2573 2573
Size: 5221
ScaI AGT'ACT
Cuts at: 3469 5181 3469
Size: 1712 3509
SfcI C'TryA_G
Cuts at: 826 1045 2390 2569 3704 4385 4576 826
Size: 219 1345 179 1135 681 191 1471
Fragments arranged by size:
1471 1345 1135 681 219 191 179
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5221
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5221
SmaI CCC'GGG
Cuts at: 1872 2548 1872
Size: 676 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2015 3325 4226 4488 820
Size: 197 926 72 1310 901 262 1553
Fragments arranged by size:
1553 1310 926 901 262 197 72
SnaBI TAC'GTA
Cuts at: 493 3012 493
Size: 2519 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5221
SphI G_CATG'C
Cuts at: 1132 2073 2579 1132
Size: 941 506 3774
Fragments arranged by size:
3774 941 506
SspI AAT'ATT
Cuts at: 5 52 3145 5
Size: 47 3093 2081
Fragments arranged by size:
3093 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5221
StyI C'CwwG_G
Cuts at: 513 1065 2660 513
Size: 552 1595 3074
Fragments arranged by size:
3074 1595 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3248 3265 3418 3603 4048 325
Size: 1255 1668 17 153 185 445 1498
Fragments arranged by size:
1668 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3467 5179 96
Size: 274 80 33 51 1443 1490 1712 138
Fragments arranged by size:
1712 1490 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5181 5213 5181
Size: 32 5189
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5221
XbaI T'CTAG_A
Cuts at: 2557 2557
Size: 5221
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5221
XmaI C'CCGG_G
Cuts at: 1870 2546 1870
Size: 676 4545
XmnI GAAnn'nnTTC
Cuts at: 3350 3350
Size: 5221
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3029 276
Size: 53 83 186 936 1495 2468
Fragments arranged by size:
2468 1495 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI
Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NspI PasI PciI PflMI
PmeI PpiI PshAI PsiI PstI PvuI SacI SalI
SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI
SpeI SphI SspI StuI StyI TaqII TatI TstI
Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I
DraIII EcoO109I EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI
PspOMI PspXI PsrI PvuII RsrII SacII SanDI SapI
SexAI SfiI SfoI SrfI SwaI XcmI