Restriction map for
pFN21AB6824
(Circular) (Six-base) MAPSORT of: pFN21AB6824.seq Check: 5190 from: 1 to: 5266
pFN21AB6824 5266 bp
With 182 enzymes: SgfI *
October 20, 2009 10:41 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3076 278
Size: 53 83 186 936 1540 2468
Fragments arranged by size:
2468 1540 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2609 1937
Size: 672 4594
Acc65I G'GTAC_C
Cuts at: 2587 2587
Size: 5266
AclI AA'CG_TT
Cuts at: 1563 3393 3766 1563
Size: 1830 373 3063
Fragments arranged by size:
3063 1830 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3329 4713 4981 1632
Size: 1697 1384 268 1917
Fragments arranged by size:
1917 1697 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5069
AflIII A'CryG_T
Cuts at: 1203 2283 4165 5142 1203
Size: 1080 1882 977 1327
Fragments arranged by size:
1882 1327 1080 977
AgeI A'CCGG_T
Cuts at: 4097 4097
Size: 5266
AhdI GACnn_n'nnGTC
Cuts at: 3995 3995
Size: 5266
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5266
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5266
AlwNI CAG_nnn'CTG
Cuts at: 3009 4581 3009
Size: 1572 3694
ApaLI G'TGCA_C
Cuts at: 3323 4479 3323
Size: 1156 4110
ApoI r'AATT_y
Cuts at: 1493 2575 2801 2953 5062 1493
Size: 1082 226 152 2109 1697
Fragments arranged by size:
2109 1697 1082 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3820 160
Size: 872 2788 1606
Fragments arranged by size:
2788 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5266
AvaI C'yCGr_G
Cuts at: 1870 1943 2313 2591 1870
Size: 73 370 278 4545
Fragments arranged by size:
4545 370 278 73
BamHI G'GATC_C
Cuts at: 2596 2963 2596
Size: 367 4899
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2587 4042 618
Size: 325 217 627 800 1455 1842
Fragments arranged by size:
1842 1455 800 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2153 2199 2322 2585 1391
Size: 762 46 123 263 4072
Fragments arranged by size:
4072 762 263 123 46
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4295
BbvCI CC'TCA_GC
Cuts at: 2543 2543
Size: 5266
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3457 3491 1903
Size: 34 1520 34 3678
Fragments arranged by size:
3678 1520 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3158 4368 3158
Size: 1210 4056
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5266
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3877 136
Size: 107 122 71 631 605 2205 1525
Fragments arranged by size:
2205 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2343 5261 2343
Size: 2918 2348
BlpI GC'TnA_GC
Cuts at: 2683 2683
Size: 5266
Bme1580I G_kGCm'C
Cuts at: 1790 2169 3327 4483 1790
Size: 379 1158 1156 2573
Fragments arranged by size:
2573 1158 1156 379
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5266
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2997 3955 442
Size: 416 53 83 399 24 1580 958 1753
Fragments arranged by size:
1753 1580 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5266
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2408 3926 1239
Size: 1169 1518 2579
Fragments arranged by size:
2579 1518 1169
Bpu10I CC'TnA_GC
Cuts at: 2543 2543
Size: 5266
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2072 2306 3391 4256 4554 2072
Size: 234 1085 865 298 2784
Fragments arranged by size:
2784 1085 865 298 234
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3929 882
Size: 617 2430 2219
Fragments arranged by size:
2430 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2164 3057 493
Size: 711 960 893 2702
Fragments arranged by size:
2702 960 893 711
BsaBI GATnn'nnATC
Cuts at: 5260 5260
Size: 5266
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3073 3455 4090 275
Size: 53 83 186 936 1540 382 635 1451
Fragments arranged by size:
1540 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2559 3699 4097 4371 4518 4929 2559
Size: 1140 398 274 147 411 2896
Fragments arranged by size:
2896 1140 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5041
Fragments arranged by size:
5041 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2444 2447 2480 1186
Size: 1258 3 33 3972
Fragments arranged by size:
3972 1258 33 3
BseYI C'CCAG_C
Cuts at: 2494 4469 4965 2494
Size: 1975 496 2795
Fragments arranged by size:
2795 1975 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2044 1163
Size: 573 308 4385
Fragments arranged by size:
4385 573 308
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2716 3477 4505 1540
Size: 275 186 715 761 1028 2301
Fragments arranged by size:
2301 1028 761 715 275 186
BsiHKAI G_wGCw'C
Cuts at: 2199 2298 2322 3327 3412 4483 2199
Size: 99 24 1005 85 1071 2982
Fragments arranged by size:
2982 1071 1005 99 85 24
BsmI GAATG_Cn'
Cuts at: 2095 2777 2870 2095
Size: 682 93 4491
Fragments arranged by size:
4491 682 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2153 2169 2199 2298 2322 2585 3327
Size: 399 363 16 30 99 24 263 742
Cuts at: 3327 3412 4483 1391
Size: 85 1071 2174
Fragments arranged by size:
2174 1071 742 399 363 263 99 85
30 24 16
BspEI T'CCGG_A
Cuts at: 2559 4929 2559
Size: 2370 2896
BspHI T'CATG_A
Cuts at: 3155 4885 3155
Size: 1730 3536
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2621 844
Size: 1777 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3153 1394
Size: 429 1330 3507
Fragments arranged by size:
3507 1330 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3761 3935 65
Size: 1183 2513 174 1396
Fragments arranged by size:
2513 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3910 4097 1700
Size: 110 2100 187 2869
Fragments arranged by size:
2869 2100 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5266
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5266
BssSI C'ACGA_G
Cuts at: 3326 4338 3326
Size: 1012 4254
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2333 794
Size: 1539 3727
BstBI TT'CG_AA
Cuts at: 4070 4070
Size: 5266
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5266
BstYI r'GATC_y
Cuts at: 1972 2343 2596 2963 3348 3365 4817 4903 4915
Size: 371 253 367 385 17 1452 86 12
Cuts at: 4915 5261 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 385 371 367 346 253 86
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3775
Fragments arranged by size:
3775 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4527
Fragments arranged by size:
4527 683 56
BtsI GCAGTG_nn'
Cuts at: 2782 3576 3596 2782
Size: 794 20 4452
Fragments arranged by size:
4452 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5266
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5231
DraI TTT'AAA
Cuts at: 2570 2570
Size: 5266
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4273 809
Size: 507 2957 1802
Fragments arranged by size:
2957 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2713 3602 5231
Size: 54 1425 50 275 18 883 889 1629
Cuts at: 5231 8
Size: 43
Fragments arranged by size:
1629 1425 889 883 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2713 1537
Size: 275 901 4090
Fragments arranged by size:
4090 901 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2028 2141 3196 1353
Size: 675 113 1055 3423
Fragments arranged by size:
3423 1055 675 113
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3853 4227 4373 387
Size: 1064 138 2264 374 146 1280
Fragments arranged by size:
2264 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2197 2320 2197
Size: 123 5143
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2408 3329 3926 4713 4981 1239
Size: 393 776 921 597 787 268 1524
Fragments arranged by size:
1524 921 787 776 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2383 2530 2383
Size: 147 5119
EcoRI G'AATT_C
Cuts at: 2575 2953 2575
Size: 378 4888
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2515 2515
Size: 5266
FspI TGC'GCA
Cuts at: 3772 3772
Size: 5266
HaeII r_GCGC'y
Cuts at: 1678 4413 1678
Size: 2735 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3907 3939 3981 4013 1373
Size: 32 135 32 2335 32 42 32 2626
Fragments arranged by size:
2626 2335 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2610 2856 669
Size: 988 281 672 246 3079
Fragments arranged by size:
3079 988 672 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5266
HpaI GTT'AAC
Cuts at: 2856 2856
Size: 5266
KpnI G_GTAC'C
Cuts at: 2591 2591
Size: 5266
MfeI C'AATT_G
Cuts at: 2865 2865
Size: 5266
MluI A'CGCG_T
Cuts at: 5142 5142
Size: 5266
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4380 4564 1305
Size: 3075 184 2007
Fragments arranged by size:
3075 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3444
Fragments arranged by size:
3444 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2186 3224 3583 3742 518
Size: 648 1020 1038 359 159 2042
Fragments arranged by size:
2042 1038 1020 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2682 3359 4507 4752 1606
Size: 1076 677 1148 245 2120
Fragments arranged by size:
2120 1148 1076 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3775
Fragments arranged by size:
3775 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5266
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5266
NotI GC'GGCC_GC
Cuts at: 2713 2713
Size: 5266
NruI TCG'CGA
Cuts at: 2101 2101
Size: 5266
NspI r_CATG'y
Cuts at: 1132 1229 2287 2624 4169 1132
Size: 97 1058 337 1545 2229
Fragments arranged by size:
2229 1545 1058 337 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5266
PciI A'CATG_T
Cuts at: 2283 4165 2283
Size: 1882 3384
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5266
PfoI T'CCnGG_A
Cuts at: 2199 2199
Size: 5266
PmeI GTTT'AAAC
Cuts at: 2570 2570
Size: 5266
PmlI CAC'GTG
Cuts at: 2164 2164
Size: 5266
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3335 3367 4848 4880 3335
Size: 32 1481 32 3721
Fragments arranged by size:
3721 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2383 2383
Size: 5266
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5266
PsiI TTA'TAA
Cuts at: 2836 2836
Size: 5266
PstI C_TGCA'G
Cuts at: 830 2618 830
Size: 1788 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5266
SacI G_AGCT'C
Cuts at: 2199 2322 2199
Size: 123 5143
SalI G'TCGA_C
Cuts at: 1936 2608 1936
Size: 672 4594
SapI GCTCTTCn'nnn_
Cuts at: 2028 2141 2028
Size: 113 5153
SbfI CC_TGCA'GG
Cuts at: 2618 2618
Size: 5266
ScaI AGT'ACT
Cuts at: 3514 5226 3514
Size: 1712 3554
SfcI C'TryA_G
Cuts at: 826 1045 2140 2614 3749 4430 4621 826
Size: 219 1095 474 1135 681 191 1471
Fragments arranged by size:
1471 1135 1095 681 474 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5266
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5266
SmaI CCC'GGG
Cuts at: 1872 2593 1872
Size: 721 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2087 2321 3370 4271 4533 820
Size: 197 926 144 234 1049 901 262 1553
Fragments arranged by size:
1553 1049 926 901 262 234 197 144
SnaBI TAC'GTA
Cuts at: 493 3057 493
Size: 2564 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5266
SphI G_CATG'C
Cuts at: 1132 2624 1132
Size: 1492 3774
SspI AAT'ATT
Cuts at: 5 52 3190 5
Size: 47 3138 2081
Fragments arranged by size:
3138 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5266
StyI C'CwwG_G
Cuts at: 513 1065 2004 2526 2705 513
Size: 552 939 522 179 3074
Fragments arranged by size:
3074 939 552 522 179
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3293 3310 3463 3648 4093 325
Size: 1255 1713 17 153 185 445 1498
Fragments arranged by size:
1713 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3512 5224 96
Size: 274 80 33 51 1443 1535 1712 138
Fragments arranged by size:
1712 1535 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5226 5258 5226
Size: 32 5234
Tth111I GACn'n_nGTC
Cuts at: 1316 2456 1316
Size: 1140 4126
XbaI T'CTAG_A
Cuts at: 2602 2602
Size: 5266
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5266
XmaI C'CCGG_G
Cuts at: 1870 2591 1870
Size: 721 4545
XmnI GAAnn'nnTTC
Cuts at: 2210 3395 2210
Size: 1185 4081
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3074 276
Size: 53 83 186 936 1540 2468
Fragments arranged by size:
2468 1540 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI
BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I
BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII
BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DrdI EaeI EagI EarI EciI
EcoICRI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NruI NspI
PasI PciI PflMI PfoI PmeI PmlI PpiI PpuMI
PshAI PsiI PstI PvuI SacI SalI SapI SbfI
ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII
EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV
NsiI PacI PspOMI PspXI PsrI PvuII RsrII SacII
SanDI SexAI SfiI SfoI SrfI SwaI XcmI