Restriction map for
pFN21AB6789
(Circular) (Six-base) MAPSORT of: pFN21AB6789.seq Check: 4816 from: 1 to: 5080
pFN21AB6789 5080 bp
With 182 enzymes: SgfI *
August 27, 2010 15:51 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2890 278
Size: 53 83 186 936 1354 2468
Fragments arranged by size:
2468 1354 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2349 2423 1937
Size: 412 74 4594
Fragments arranged by size:
4594 412 74
Acc65I G'GTAC_C
Cuts at: 2401 2401
Size: 5080
AclI AA'CG_TT
Cuts at: 1563 3207 3580 1563
Size: 1644 373 3063
Fragments arranged by size:
3063 1644 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3143 4527 4795 1632
Size: 1511 1384 268 1917
Fragments arranged by size:
1917 1511 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4883
AflIII A'CryG_T
Cuts at: 1203 3979 4956 1203
Size: 2776 977 1327
Fragments arranged by size:
2776 1327 977
AgeI A'CCGG_T
Cuts at: 3911 3911
Size: 5080
AhdI GACnn_n'nnGTC
Cuts at: 3809 3809
Size: 5080
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5080
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2075 2116 1184
Size: 891 41 4148
Fragments arranged by size:
4148 891 41
AlwNI CAG_nnn'CTG
Cuts at: 2823 4395 2823
Size: 1572 3508
ApaLI G'TGCA_C
Cuts at: 3137 4293 3137
Size: 1156 3924
ApoI r'AATT_y
Cuts at: 1493 2389 2615 2767 4876 1493
Size: 896 226 152 2109 1697
Fragments arranged by size:
2109 1697 896 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3634 160
Size: 872 2602 1606
Fragments arranged by size:
2602 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5080
AvaI C'yCGr_G
Cuts at: 1870 1943 2405 1870
Size: 73 462 4545
Fragments arranged by size:
4545 462 73
BamHI G'GATC_C
Cuts at: 2410 2777 2410
Size: 367 4713
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2401 3856 618
Size: 325 217 627 614 1455 1842
Fragments arranged by size:
1842 1455 627 614 325 217
BanII G_rGCy'C
Cuts at: 1391 2299 2399 1391
Size: 908 100 4072
Fragments arranged by size:
4072 908 100
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2192 928
Size: 971 293 3816
Fragments arranged by size:
3816 971 293
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 1987 2021 3271 3305 1903
Size: 34 50 34 1250 34 3678
Fragments arranged by size:
3678 1250 50 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2972 4182 2972
Size: 1210 3870
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5080
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3691 136
Size: 107 122 71 631 605 2019 1525
Fragments arranged by size:
2019 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5075 5075
Size: 5080
BlpI GC'TnA_GC
Cuts at: 2497 2497
Size: 5080
Bme1580I G_kGCm'C
Cuts at: 1790 3141 4297 1790
Size: 1351 1156 2573
Fragments arranged by size:
2573 1351 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5080
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2302 2811 3769
Size: 416 53 83 399 24 885 509 958
Cuts at: 3769 442
Size: 1753
Fragments arranged by size:
1753 958 885 509 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5080
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3740 1239
Size: 2501 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2252 3205 4070 4368 2252
Size: 953 865 298 2964
Fragments arranged by size:
2964 953 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3743 882
Size: 617 2244 2219
Fragments arranged by size:
2244 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2871 493
Size: 711 1667 2702
Fragments arranged by size:
2702 1667 711
BsaBI GATnn'nnATC
Cuts at: 5074 5074
Size: 5080
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2887 3269 3904 275
Size: 53 83 186 936 1354 382 635 1451
Fragments arranged by size:
1451 1354 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3513 3911 4185 4332 4743 3513
Size: 398 274 147 411 3850
Fragments arranged by size:
3850 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4855
Fragments arranged by size:
4855 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2086 1186
Size: 900 4180
BseYI C'CCAG_C
Cuts at: 4283 4779 4283
Size: 496 4584
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2319 1163
Size: 573 583 3924
Fragments arranged by size:
3924 583 573
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2530 3291 4319 1540
Size: 275 186 529 761 1028 2301
Fragments arranged by size:
2301 1028 761 529 275 186
BsiHKAI G_wGCw'C
Cuts at: 3141 3226 4297 3141
Size: 85 1071 3924
Fragments arranged by size:
3924 1071 85
BsmI GAATG_Cn'
Cuts at: 2591 2684 2591
Size: 93 4987
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2299 2399 3141 3226 4297 1391
Size: 399 509 100 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 509 399 100 85
BspEI T'CCGG_A
Cuts at: 4743 4743
Size: 5080
BspHI T'CATG_A
Cuts at: 2969 4699 2969
Size: 1730 3350
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2108 2435 844
Size: 1264 327 3489
Fragments arranged by size:
3489 1264 327
BsrBI CCG'CTC
Cuts at: 1394 1823 2967 1394
Size: 429 1144 3507
Fragments arranged by size:
3507 1144 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2325 3575 3749 65
Size: 1183 1077 1250 174 1396
Fragments arranged by size:
1396 1250 1183 1077 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3724 3911 1700
Size: 110 1914 187 2869
Fragments arranged by size:
2869 1914 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5080
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5080
BssSI C'ACGA_G
Cuts at: 3140 4152 3140
Size: 1012 4068
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5080
BstBI TT'CG_AA
Cuts at: 3884 3884
Size: 5080
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5080
BstXI CCAn_nnnn'nTGG
Cuts at: 2338 2338
Size: 5080
BstYI r'GATC_y
Cuts at: 1972 2410 2777 3162 3179 4631 4717 4729 5075
Size: 438 367 385 17 1452 86 12 346
Cuts at: 5075 1972
Size: 1977
Fragments arranged by size:
1977 1452 438 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4528
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4341
Fragments arranged by size:
4341 683 56
BtsI GCAGTG_nn'
Cuts at: 2088 2331 2596 3390 3410 2088
Size: 243 265 794 20 3758
Fragments arranged by size:
3758 794 265 243 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5080
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5045
DraI TTT'AAA
Cuts at: 2384 2384
Size: 5080
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4087 809
Size: 507 2771 1802
Fragments arranged by size:
2771 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2527 3416 5045
Size: 54 1425 50 275 18 697 889 1629
Cuts at: 5045 8
Size: 43
Fragments arranged by size:
1629 1425 889 697 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2527 1537
Size: 275 715 4090
Fragments arranged by size:
4090 715 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3010 1353
Size: 1657 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3667 4041 4187 387
Size: 1064 138 2078 374 146 1280
Fragments arranged by size:
2078 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3143 3740 4527 4795 1239
Size: 393 1511 597 787 268 1524
Fragments arranged by size:
1524 1511 787 597 393 268
EcoRI G'AATT_C
Cuts at: 2389 2767 2389
Size: 378 4702
FspI TGC'GCA
Cuts at: 2321 3586 2321
Size: 1265 3815
FspAI rTGC'GCAy
Cuts at: 2321 2321
Size: 5080
HaeII r_GCGC'y
Cuts at: 1678 4227 1678
Size: 2549 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2070 2102 3721 3753 3795
Size: 32 135 32 498 32 1619 32 42
Cuts at: 3795 3827 1373
Size: 32 2626
Fragments arranged by size:
2626 1619 498 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2424 2670 669
Size: 988 281 486 246 3079
Fragments arranged by size:
3079 988 486 281 246
HindIII A'AGCT_T
Cuts at: 748 2112 748
Size: 1364 3716
HpaI GTT'AAC
Cuts at: 2670 2670
Size: 5080
KpnI G_GTAC'C
Cuts at: 2405 2405
Size: 5080
MfeI C'AATT_G
Cuts at: 2679 2679
Size: 5080
MluI A'CGCG_T
Cuts at: 4956 4956
Size: 5080
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4194 4378 1305
Size: 2889 184 2007
Fragments arranged by size:
2889 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3258
Fragments arranged by size:
3258 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2130 3038 3397 3556 518
Size: 648 964 908 359 159 2042
Fragments arranged by size:
2042 964 908 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2362 2496 3173 4321 4566 1606
Size: 756 134 677 1148 245 2120
Fragments arranged by size:
2120 1148 756 677 245 134
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4528
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5080
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5080
NotI GC'GGCC_GC
Cuts at: 2527 2527
Size: 5080
NspI r_CATG'y
Cuts at: 1132 1229 2320 2438 3983 1132
Size: 97 1091 118 1545 2229
Fragments arranged by size:
2229 1545 1091 118 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5080
PciI A'CATG_T
Cuts at: 3979 3979
Size: 5080
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5080
PmeI GTTT'AAAC
Cuts at: 2384 2384
Size: 5080
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3149 3181 4662 4694 3149
Size: 32 1481 32 3535
Fragments arranged by size:
3535 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5080
PsiI TTA'TAA
Cuts at: 2650 2650
Size: 5080
PstI C_TGCA'G
Cuts at: 830 2064 2095 2367 2432 830
Size: 1234 31 272 65 3478
Fragments arranged by size:
3478 1234 272 65 31
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5080
PvuII CAG'CTG
Cuts at: 2362 2362
Size: 5080
SalI G'TCGA_C
Cuts at: 1936 2422 1936
Size: 486 4594
SbfI CC_TGCA'GG
Cuts at: 2432 2432
Size: 5080
ScaI AGT'ACT
Cuts at: 3328 5040 3328
Size: 1712 3368
SfcI C'TryA_G
Cuts at: 826 1045 2060 2091 2192 2363 2428 3563 4244
Size: 219 1015 31 101 171 65 1135 681
Cuts at: 4244 4435 826
Size: 191 1471
Fragments arranged by size:
1471 1135 1015 681 219 191 171 101
65 31
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5080
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5080
SmaI CCC'GGG
Cuts at: 1872 2407 1872
Size: 535 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2267 3184 4085 4347 820
Size: 197 926 324 917 901 262 1553
Fragments arranged by size:
1553 926 917 901 324 262 197
SnaBI TAC'GTA
Cuts at: 493 2871 493
Size: 2378 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5080
SphI G_CATG'C
Cuts at: 1132 2438 1132
Size: 1306 3774
SspI AAT'ATT
Cuts at: 5 52 3004 5
Size: 47 2952 2081
Fragments arranged by size:
2952 2081 47
StuI AGG'CCT
Cuts at: 1517 2150 1517
Size: 633 4447
StyI C'CwwG_G
Cuts at: 513 1065 2519 513
Size: 552 1454 3074
Fragments arranged by size:
3074 1454 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2126 3107 3124 3277 3462 3907 325
Size: 1255 546 981 17 153 185 445 1498
Fragments arranged by size:
1498 1255 981 546 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3326 5038 96
Size: 274 80 33 51 1443 1349 1712 138
Fragments arranged by size:
1712 1443 1349 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5040 5072 5040
Size: 32 5048
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5080
XbaI T'CTAG_A
Cuts at: 2416 2416
Size: 5080
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5080
XmaI C'CCGG_G
Cuts at: 1870 2405 1870
Size: 535 4545
XmnI GAAnn'nnTTC
Cuts at: 3209 3209
Size: 5080
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2888 276
Size: 53 83 186 936 1354 2468
Fragments arranged by size:
2468 1354 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI
EcoRI FspI FspAI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PmeI
PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI
ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I
DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI KasI
NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI
PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI
SapI SexAI SfiI SfoI SrfI SwaI XcmI