Restriction map for
pFN21AB6771
(Circular) (Six-base) MAPSORT of: pFN21AB6771.seq Check: 15 from: 1 to: 5059
pFN21AB6771 5059 bp
With 182 enzymes: SgfI *
February 27, 2009 15:33 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2869 278
Size: 53 83 186 936 1333 2468
Fragments arranged by size:
2468 1333 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2402 1937
Size: 465 4594
Acc65I G'GTAC_C
Cuts at: 2380 2380
Size: 5059
AclI AA'CG_TT
Cuts at: 1563 3186 3559 1563
Size: 1623 373 3063
Fragments arranged by size:
3063 1623 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2335 3122 4506 4774 1632
Size: 703 787 1384 268 1917
Fragments arranged by size:
1917 1384 787 703 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4862
AflIII A'CryG_T
Cuts at: 1203 3958 4935 1203
Size: 2755 977 1327
Fragments arranged by size:
2755 1327 977
AgeI A'CCGG_T
Cuts at: 3890 3890
Size: 5059
AhdI GACnn_n'nnGTC
Cuts at: 3788 3788
Size: 5059
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5059
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5059
AlwNI CAG_nnn'CTG
Cuts at: 2188 2802 4374 2188
Size: 614 1572 2873
Fragments arranged by size:
2873 1572 614
ApaLI G'TGCA_C
Cuts at: 3116 4272 3116
Size: 1156 3903
ApoI r'AATT_y
Cuts at: 1493 2368 2594 2746 4855 1493
Size: 875 226 152 2109 1697
Fragments arranged by size:
2109 1697 875 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3613 160
Size: 872 2581 1606
Fragments arranged by size:
2581 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5059
AvaI C'yCGr_G
Cuts at: 1870 1943 2384 1870
Size: 73 441 4545
Fragments arranged by size:
4545 441 73
BamHI G'GATC_C
Cuts at: 2389 2756 2389
Size: 367 4692
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2380 3835 618
Size: 325 217 627 593 1455 1842
Fragments arranged by size:
1842 1455 627 593 325 217
BanII G_rGCy'C
Cuts at: 1391 2378 1391
Size: 987 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4088
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3250 3284 1903
Size: 34 1313 34 3678
Fragments arranged by size:
3678 1313 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2951 4161 2951
Size: 1210 3849
BclI T'GATC_A
Cuts at: 1548 2298 1548
Size: 750 4309
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3670 136
Size: 107 122 71 631 605 1998 1525
Fragments arranged by size:
1998 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5054 5054
Size: 5059
BlpI GC'TnA_GC
Cuts at: 2476 2476
Size: 5059
Bme1580I G_kGCm'C
Cuts at: 1790 3120 4276 1790
Size: 1330 1156 2573
Fragments arranged by size:
2573 1330 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5059
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2230 2790 3748
Size: 416 53 83 399 24 813 560 958
Cuts at: 3748 442
Size: 1753
Fragments arranged by size:
1753 958 813 560 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5059
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2192 2204 3719 1239
Size: 953 12 1515 2579
Fragments arranged by size:
2579 1515 953 12
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2246 2273 3184 4049 4347 2246
Size: 27 911 865 298 2958
Fragments arranged by size:
2958 911 865 298 27
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2172 3722 882
Size: 617 673 1550 2219
Fragments arranged by size:
2219 1550 673 617
BsaAI yAC'GTr
Cuts at: 493 1204 2850 493
Size: 711 1646 2702
Fragments arranged by size:
2702 1646 711
BsaBI GATnn'nnATC
Cuts at: 2297 2300 5053 2297
Size: 3 2753 2303
Fragments arranged by size:
2753 2303 3
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2866 3248 3883 275
Size: 53 83 186 936 1333 382 635 1451
Fragments arranged by size:
1451 1333 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3492 3890 4164 4311 4722 3492
Size: 398 274 147 411 3829
Fragments arranged by size:
3829 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4834
Fragments arranged by size:
4834 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5059
BseYI C'CCAG_C
Cuts at: 2051 4262 4758 2051
Size: 2211 496 2352
Fragments arranged by size:
2352 2211 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2055 2229 1163
Size: 573 319 174 3993
Fragments arranged by size:
3993 573 319 174
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2206 2509 3270 4298 1540
Size: 275 186 205 303 761 1028 2301
Fragments arranged by size:
2301 1028 761 303 275 205 186
BsiHKAI G_wGCw'C
Cuts at: 3120 3205 4276 3120
Size: 85 1071 3903
Fragments arranged by size:
3903 1071 85
BsmI GAATG_Cn'
Cuts at: 2570 2663 2570
Size: 93 4966
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2378 3120 3205 4276 1391
Size: 399 588 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 588 399 85
BspEI T'CCGG_A
Cuts at: 4722 4722
Size: 5059
BspHI T'CATG_A
Cuts at: 2145 2948 4678 2145
Size: 803 1730 2526
Fragments arranged by size:
2526 1730 803
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2414 844
Size: 1570 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2946 1394
Size: 429 1123 3507
Fragments arranged by size:
3507 1123 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3554 3728 65
Size: 1183 2306 174 1396
Fragments arranged by size:
2306 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3703 3890 1700
Size: 110 1893 187 2869
Fragments arranged by size:
2869 1893 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5059
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5059
BssSI C'ACGA_G
Cuts at: 3119 4131 3119
Size: 1012 4047
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5059
BstBI TT'CG_AA
Cuts at: 3863 3863
Size: 5059
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5059
BstYI r'GATC_y
Cuts at: 1972 2389 2756 3141 3158 4610 4696 4708 5054
Size: 417 367 385 17 1452 86 12 346
Cuts at: 5054 1972
Size: 1977
Fragments arranged by size:
1977 1452 417 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 2028 513
Size: 552 939 24 3544
Fragments arranged by size:
3544 939 552 24
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4320
Fragments arranged by size:
4320 683 56
BtsI GCAGTG_nn'
Cuts at: 2575 3369 3389 2575
Size: 794 20 4245
Fragments arranged by size:
4245 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5059
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5024
DraI TTT'AAA
Cuts at: 2363 2363
Size: 5059
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4066 809
Size: 507 2750 1802
Fragments arranged by size:
2750 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2506 3395 5024
Size: 54 1425 50 275 18 676 889 1629
Cuts at: 5024 8
Size: 43
Fragments arranged by size:
1629 1425 889 676 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2506 1537
Size: 275 694 4090
Fragments arranged by size:
4090 694 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2989 1353
Size: 1636 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3646 4020 4166 387
Size: 1064 138 2057 374 146 1280
Fragments arranged by size:
2057 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2192 2204 2335 3122 3719 4506 4774
Size: 393 560 12 131 787 597 787 268
Cuts at: 4774 1239
Size: 1524
Fragments arranged by size:
1524 787 787 597 560 393 268 131
12
EcoO109I rG'GnC_Cy
Cuts at: 2167 2229 2167
Size: 62 4997
EcoRI G'AATT_C
Cuts at: 2368 2746 2368
Size: 378 4681
FspI TGC'GCA
Cuts at: 3565 3565
Size: 5059
HaeII r_GCGC'y
Cuts at: 1678 4206 1678
Size: 2528 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3700 3732 3774 3806 1373
Size: 32 135 32 2128 32 42 32 2626
Fragments arranged by size:
2626 2128 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2403 2649 669
Size: 988 281 465 246 3079
Fragments arranged by size:
3079 988 465 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5059
HpaI GTT'AAC
Cuts at: 2649 2649
Size: 5059
KpnI G_GTAC'C
Cuts at: 2384 2384
Size: 5059
MfeI C'AATT_G
Cuts at: 2658 2658
Size: 5059
MluI A'CGCG_T
Cuts at: 4935 4935
Size: 5059
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2172 4173 4357 1305
Size: 867 2001 184 2007
Fragments arranged by size:
2007 2001 867 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3237
Fragments arranged by size:
3237 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2150 3017 3376 3535 518
Size: 648 984 867 359 159 2042
Fragments arranged by size:
2042 984 867 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2024 2475 3152 4300 4545 1606
Size: 418 451 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 451 418 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3568
Fragments arranged by size:
3568 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5059
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5059
NotI GC'GGCC_GC
Cuts at: 2506 2506
Size: 5059
NspI r_CATG'y
Cuts at: 1132 1229 2417 3962 1132
Size: 97 1188 1545 2229
Fragments arranged by size:
2229 1545 1188 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5059
PciI A'CATG_T
Cuts at: 3958 3958
Size: 5059
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5059
PfoI T'CCnGG_A
Cuts at: 2169 2169
Size: 5059
PmeI GTTT'AAAC
Cuts at: 2363 2363
Size: 5059
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3128 3160 4641 4673 3128
Size: 32 1481 32 3514
Fragments arranged by size:
3514 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2167 2167
Size: 5059
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5059
PsiI TTA'TAA
Cuts at: 2629 2629
Size: 5059
PstI C_TGCA'G
Cuts at: 830 2109 2411 830
Size: 1279 302 3478
Fragments arranged by size:
3478 1279 302
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5059
SalI G'TCGA_C
Cuts at: 1936 2401 1936
Size: 465 4594
SbfI CC_TGCA'GG
Cuts at: 2411 2411
Size: 5059
ScaI AGT'ACT
Cuts at: 3307 5019 3307
Size: 1712 3347
SfcI C'TryA_G
Cuts at: 826 1045 2105 2407 3542 4223 4414 826
Size: 219 1060 302 1135 681 191 1471
Fragments arranged by size:
1471 1135 1060 681 302 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5059
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5059
SmaI CCC'GGG
Cuts at: 1872 2386 1872
Size: 514 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2261 2288 3163 4064 4326 820
Size: 197 926 318 27 875 901 262 1553
Fragments arranged by size:
1553 926 901 875 318 262 197 27
SnaBI TAC'GTA
Cuts at: 493 2850 493
Size: 2357 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5059
SphI G_CATG'C
Cuts at: 1132 2417 1132
Size: 1285 3774
SspI AAT'ATT
Cuts at: 5 52 2983 5
Size: 47 2931 2081
Fragments arranged by size:
2931 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5059
StyI C'CwwG_G
Cuts at: 513 1065 2004 2498 513
Size: 552 939 494 3074
Fragments arranged by size:
3074 939 552 494
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3086 3103 3256 3441 3886 325
Size: 1255 1506 17 153 185 445 1498
Fragments arranged by size:
1506 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3305 5017 96
Size: 274 80 33 51 1443 1328 1712 138
Fragments arranged by size:
1712 1443 1328 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5019 5051 5019
Size: 32 5027
Tth111I GACn'n_nGTC
Cuts at: 1316 2165 1316
Size: 849 4210
XbaI T'CTAG_A
Cuts at: 2395 2395
Size: 5059
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5059
XmaI C'CCGG_G
Cuts at: 1870 2384 1870
Size: 514 4545
XmnI GAAnn'nnTTC
Cuts at: 3188 3188
Size: 5059
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2867 276
Size: 53 83 186 936 1333 2468
Fragments arranged by size:
2468 1333 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI
DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I
EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI
MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI
NheI NotI NspI PasI PciI PflMI PfoI PmeI
PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI
ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I
Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI
KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI
PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI
SapI SexAI SfiI SfoI SrfI SwaI XcmI