Restriction map for
pFN21AB6742
(Circular) (Six-base) MAPSORT of: pFN21AB6742.seq Check: 1171 from: 1 to: 5131
pFN21AB6742 5131 bp
With 182 enzymes: SgfI *
October 20, 2009 10:43 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2941 278
Size: 53 83 186 936 1405 2468
Fragments arranged by size:
2468 1405 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2474 1937
Size: 537 4594
Acc65I G'GTAC_C
Cuts at: 2452 2452
Size: 5131
AclI AA'CG_TT
Cuts at: 1563 3258 3631 1563
Size: 1695 373 3063
Fragments arranged by size:
3063 1695 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3194 4578 4846 1632
Size: 1562 1384 268 1917
Fragments arranged by size:
1917 1562 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4934
AflIII A'CryG_T
Cuts at: 1203 4030 5007 1203
Size: 2827 977 1327
Fragments arranged by size:
2827 1327 977
AgeI A'CCGG_T
Cuts at: 3962 3962
Size: 5131
AhdI GACnn_n'nnGTC
Cuts at: 3860 3860
Size: 5131
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5131
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5131
AlwNI CAG_nnn'CTG
Cuts at: 2281 2874 4446 2281
Size: 593 1572 2966
Fragments arranged by size:
2966 1572 593
ApaLI G'TGCA_C
Cuts at: 3188 4344 3188
Size: 1156 3975
ApoI r'AATT_y
Cuts at: 1493 2440 2666 2818 4927 1493
Size: 947 226 152 2109 1697
Fragments arranged by size:
2109 1697 947 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3685 160
Size: 872 2653 1606
Fragments arranged by size:
2653 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5131
AvaI C'yCGr_G
Cuts at: 1870 1943 2456 1870
Size: 73 513 4545
Fragments arranged by size:
4545 513 73
BamHI G'GATC_C
Cuts at: 2461 2828 2461
Size: 367 4764
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2452 3907 618
Size: 325 217 627 665 1455 1842
Fragments arranged by size:
1842 1455 665 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2356 2450 1391
Size: 965 94 4072
Fragments arranged by size:
4072 965 94
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2227 928
Size: 971 328 3832
Fragments arranged by size:
3832 971 328
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3322 3356 1903
Size: 34 1385 34 3678
Fragments arranged by size:
3678 1385 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3023 4233 3023
Size: 1210 3921
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5131
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2075 3742 136
Size: 107 122 71 631 605 403 1667 1525
Fragments arranged by size:
1667 1525 631 605 403 122 107 71
BglII A'GATC_T
Cuts at: 5126 5126
Size: 5131
BlpI GC'TnA_GC
Cuts at: 2012 2548 2012
Size: 536 4595
Bme1580I G_kGCm'C
Cuts at: 1790 3192 4348 1790
Size: 1402 1156 2573
Fragments arranged by size:
2573 1402 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5131
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2862 3820 442
Size: 416 53 83 399 24 1445 958 1753
Fragments arranged by size:
1753 1445 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5131
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3791 1239
Size: 2552 2579
Bpu10I CC'TnA_GC
Cuts at: 2051 2051
Size: 5131
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3256 4121 4419 3256
Size: 865 298 3968
Fragments arranged by size:
3968 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3794 882
Size: 617 2295 2219
Fragments arranged by size:
2295 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2922 493
Size: 711 1718 2702
Fragments arranged by size:
2702 1718 711
BsaBI GATnn'nnATC
Cuts at: 5125 5125
Size: 5131
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2938 3320 3955 275
Size: 53 83 186 936 1405 382 635 1451
Fragments arranged by size:
1451 1405 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3564 3962 4236 4383 4794 3564
Size: 398 274 147 411 3901
Fragments arranged by size:
3901 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4906
Fragments arranged by size:
4906 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5131
BseYI C'CCAG_C
Cuts at: 2268 2284 4334 4830 2268
Size: 16 2050 496 2569
Fragments arranged by size:
2569 2050 496 16
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2144 1163
Size: 573 408 4150
Fragments arranged by size:
4150 573 408
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2581 3342 4370 1540
Size: 275 186 580 761 1028 2301
Fragments arranged by size:
2301 1028 761 580 275 186
BsiHKAI G_wGCw'C
Cuts at: 2356 3192 3277 4348 2356
Size: 836 85 1071 3139
Fragments arranged by size:
3139 1071 836 85
BsmI GAATG_Cn'
Cuts at: 2642 2735 2642
Size: 93 5038
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2356 2450 3192 3277 4348 1391
Size: 399 566 94 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 566 399 94 85
BspEI T'CCGG_A
Cuts at: 4794 4794
Size: 5131
BspHI T'CATG_A
Cuts at: 3020 4750 3020
Size: 1730 3401
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2486 844
Size: 1642 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2347 3018 1394
Size: 429 524 671 3507
Fragments arranged by size:
3507 671 524 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3626 3800 65
Size: 1183 2378 174 1396
Fragments arranged by size:
2378 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3775 3962 1700
Size: 110 1965 187 2869
Fragments arranged by size:
2869 1965 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5131
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5131
BssSI C'ACGA_G
Cuts at: 3191 4203 3191
Size: 1012 4119
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5131
BstBI TT'CG_AA
Cuts at: 3935 3935
Size: 5131
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5131
BstYI r'GATC_y
Cuts at: 1972 2461 2828 3213 3230 4682 4768 4780 5126
Size: 489 367 385 17 1452 86 12 346
Cuts at: 5126 1972
Size: 1977
Fragments arranged by size:
1977 1452 489 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2058 2064 2070 513
Size: 552 993 6 6 3574
Fragments arranged by size:
3574 993 552 6 6
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4392
Fragments arranged by size:
4392 683 56
BtsI GCAGTG_nn'
Cuts at: 2647 3441 3461 2647
Size: 794 20 4317
Fragments arranged by size:
4317 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5131
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5096
DraI TTT'AAA
Cuts at: 2435 2435
Size: 5131
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2038 4138 809
Size: 507 722 2100 1802
Fragments arranged by size:
2100 1802 722 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2061 2067 2578
Size: 54 1425 50 275 18 231 6 511
Cuts at: 2578 3467 5096 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 511 275 231 54 50
43 18 6
EagI C'GGCC_G
Cuts at: 1537 1812 2578 1537
Size: 275 766 4090
Fragments arranged by size:
4090 766 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3061 1353
Size: 1708 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3718 4092 4238 387
Size: 1064 138 2129 374 146 1280
Fragments arranged by size:
2129 1280 1064 374 146 138
EcoICRI GAG'CTC
Cuts at: 2354 2354
Size: 5131
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3194 3791 4578 4846 1239
Size: 393 1562 597 787 268 1524
Fragments arranged by size:
1562 1524 787 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2026 2026
Size: 5131
EcoRI G'AATT_C
Cuts at: 2440 2818 2440
Size: 378 4753
FspI TGC'GCA
Cuts at: 3637 3637
Size: 5131
HaeII r_GCGC'y
Cuts at: 1678 2058 4278 1678
Size: 380 2220 2531
Fragments arranged by size:
2531 2220 380
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3772 3804 3846 3878 1373
Size: 32 135 32 2200 32 42 32 2626
Fragments arranged by size:
2626 2200 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2475 2721 669
Size: 988 281 537 246 3079
Fragments arranged by size:
3079 988 537 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5131
HpaI GTT'AAC
Cuts at: 2721 2721
Size: 5131
KpnI G_GTAC'C
Cuts at: 2456 2456
Size: 5131
MfeI C'AATT_G
Cuts at: 2730 2730
Size: 5131
MluI A'CGCG_T
Cuts at: 5007 5007
Size: 5131
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4245 4429 1305
Size: 2940 184 2007
Fragments arranged by size:
2940 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2063 10
Size: 54 1425 343 231 3078
Fragments arranged by size:
3078 1425 343 231 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3089 3448 3607 518
Size: 648 1923 359 159 2042
Fragments arranged by size:
2042 1923 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2547 3224 4372 4617 1606
Size: 941 677 1148 245 2120
Fragments arranged by size:
2120 1148 941 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4579
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5131
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5131
NotI GC'GGCC_GC
Cuts at: 2578 2578
Size: 5131
NspI r_CATG'y
Cuts at: 1132 1229 2167 2489 4034 1132
Size: 97 938 322 1545 2229
Fragments arranged by size:
2229 1545 938 322 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5131
PciI A'CATG_T
Cuts at: 4030 4030
Size: 5131
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5131
PmeI GTTT'AAAC
Cuts at: 2435 2435
Size: 5131
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3200 3232 4713 4745 3200
Size: 32 1481 32 3586
Fragments arranged by size:
3586 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2026 2026
Size: 5131
PshAI GACnn'nnGTC
Cuts at: 1613 2127 1613
Size: 514 4617
PsiI TTA'TAA
Cuts at: 2701 2701
Size: 5131
PstI C_TGCA'G
Cuts at: 830 2100 2483 830
Size: 1270 383 3478
Fragments arranged by size:
3478 1270 383
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5131
SacI G_AGCT'C
Cuts at: 2356 2356
Size: 5131
SalI G'TCGA_C
Cuts at: 1936 2473 1936
Size: 537 4594
SbfI CC_TGCA'GG
Cuts at: 2483 2483
Size: 5131
ScaI AGT'ACT
Cuts at: 2037 3379 5091 2037
Size: 1342 1712 2077
Fragments arranged by size:
2077 1712 1342
SfcI C'TryA_G
Cuts at: 826 1045 2096 2479 3614 4295 4486 826
Size: 219 1051 383 1135 681 191 1471
Fragments arranged by size:
1471 1135 1051 681 383 219 191
SfiI GGCCn_nnn'nGGCC
Cuts at: 2075 2075
Size: 5131
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5131
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5131
SmaI CCC'GGG
Cuts at: 1872 2458 1872
Size: 586 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3235 4136 4398 820
Size: 197 926 1292 901 262 1553
Fragments arranged by size:
1553 1292 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2922 493
Size: 2429 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5131
SphI G_CATG'C
Cuts at: 1132 2489 1132
Size: 1357 3774
SspI AAT'ATT
Cuts at: 5 52 3055 5
Size: 47 3003 2081
Fragments arranged by size:
3003 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5131
StyI C'CwwG_G
Cuts at: 513 1065 2242 2570 513
Size: 552 1177 328 3074
Fragments arranged by size:
3074 1177 552 328
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3158 3175 3328 3513 3958 325
Size: 1255 1578 17 153 185 445 1498
Fragments arranged by size:
1578 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2035 3377 5089
Size: 274 80 33 51 1443 58 1342 1712
Cuts at: 5089 96
Size: 138
Fragments arranged by size:
1712 1443 1342 274 138 80 58 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5091 5123 5091
Size: 32 5099
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5131
XbaI T'CTAG_A
Cuts at: 2467 2467
Size: 5131
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5131
XmaI C'CCGG_G
Cuts at: 1870 2456 1870
Size: 586 4545
XmnI GAAnn'nnTTC
Cuts at: 3260 3260
Size: 5131
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2939 276
Size: 53 83 186 936 1405 2468
Fragments arranged by size:
2468 1405 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI
Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII
HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I
NcoI NdeI NheI NotI NspI PasI PciI PflMI
PmeI PpiI PpuMI PshAI PsiI PstI PvuI SacI
SalI SbfI ScaI SfcI SfiI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I
DraIII EcoNI EcoRV FalI FseI FspAI KasI NaeI
NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI
PspXI PsrI PvuII RsrII SacII SanDI SapI SexAI
SfoI SrfI SwaI XcmI