Restriction map for
pFN21AB6323
(Circular) (Six-base) MAPSORT of: pFN21AB6323.seq Check: 5005 from: 1 to: 5488
pFN21AB6323 5488 bp
With 182 enzymes: SgfI *
August 16, 2010 14:51 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2110 2465 2110
Size: 355 5133
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3298 278
Size: 53 83 186 936 1762 2468
Fragments arranged by size:
2468 1762 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2831 1937
Size: 894 4594
Acc65I G'GTAC_C
Cuts at: 2809 2809
Size: 5488
AclI AA'CG_TT
Cuts at: 1563 3615 3988 1563
Size: 2052 373 3063
Fragments arranged by size:
3063 2052 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2274 2342 2501 3551 4935 5203 1632
Size: 642 68 159 1050 1384 268 1917
Fragments arranged by size:
1917 1384 1050 642 268 159 68
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5291
AflIII A'CryG_T
Cuts at: 1203 2550 4387 5364 1203
Size: 1347 1837 977 1327
Fragments arranged by size:
1837 1347 1327 977
AgeI A'CCGG_T
Cuts at: 4319 4319
Size: 5488
AhdI GACnn_n'nnGTC
Cuts at: 4217 4217
Size: 5488
AleI CACnn'nnGTG
Cuts at: 1166 2738 1166
Size: 1572 3916
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5488
AlwNI CAG_nnn'CTG
Cuts at: 2390 3231 4803 2390
Size: 841 1572 3075
Fragments arranged by size:
3075 1572 841
ApaI G_GGCC'C
Cuts at: 2696 2696
Size: 5488
ApaLI G'TGCA_C
Cuts at: 2044 2168 3545 4701 2044
Size: 124 1377 1156 2831
Fragments arranged by size:
2831 1377 1156 124
ApoI r'AATT_y
Cuts at: 1493 2797 3023 3175 5284 1493
Size: 1304 226 152 2109 1697
Fragments arranged by size:
2109 1697 1304 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4042 160
Size: 872 3010 1606
Fragments arranged by size:
3010 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5488
AvaI C'yCGr_G
Cuts at: 1870 1943 2813 1870
Size: 73 870 4545
Fragments arranged by size:
4545 870 73
BamHI G'GATC_C
Cuts at: 2818 3185 2818
Size: 367 5121
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2051 2809 4264 618
Size: 325 217 627 264 758 1455 1842
Fragments arranged by size:
1842 1455 758 627 325 264 217
BanII G_rGCy'C
Cuts at: 1391 2607 2696 2807 1391
Size: 1216 89 111 4072
Fragments arranged by size:
4072 1216 111 89
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2262 2355 2507 928
Size: 971 363 93 152 3909
Fragments arranged by size:
3909 971 363 152 93
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3679 3713 1903
Size: 34 1742 34 3678
Fragments arranged by size:
3678 1742 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3380 4590 3380
Size: 1210 4278
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5488
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4099 136
Size: 107 122 71 631 605 2427 1525
Fragments arranged by size:
2427 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5483 5483
Size: 5488
BlpI GC'TnA_GC
Cuts at: 2905 2905
Size: 5488
Bme1580I G_kGCm'C
Cuts at: 1790 2048 2061 2149 2172 2696 2710 3549 4705
Size: 258 13 88 23 524 14 839 1156
Cuts at: 4705 1790
Size: 2573
Fragments arranged by size:
2573 1156 839 524 258 88 23 14
13
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5488
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2170 2456 3219
Size: 416 53 83 399 24 753 286 763
Cuts at: 3219 4177 442
Size: 958 1753
Fragments arranged by size:
1753 958 763 753 416 399 286 83
53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5488
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2338 4148 1239
Size: 1099 1810 2579
Fragments arranged by size:
2579 1810 1099
Bpu10I CC'TnA_GC
Cuts at: 2697 2697
Size: 5488
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3613 4478 4776 3613
Size: 865 298 4325
Fragments arranged by size:
4325 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4151 882
Size: 617 2652 2219
Fragments arranged by size:
2652 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3279 493
Size: 711 2075 2702
Fragments arranged by size:
2702 2075 711
BsaBI GATnn'nnATC
Cuts at: 5482 5482
Size: 5488
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3295 3677 4312 275
Size: 53 83 186 936 1762 382 635 1451
Fragments arranged by size:
1762 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 2751 3921 4319 4593 4740 5151 2751
Size: 1170 398 274 147 411 3088
Fragments arranged by size:
3088 1170 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5263
Fragments arranged by size:
5263 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2507 1186
Size: 1321 4167
BseYI C'CCAG_C
Cuts at: 2088 2227 2472 2600 4691 5187 2088
Size: 139 245 128 2091 496 2389
Fragments arranged by size:
2389 2091 496 245 139 128
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4915
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2938 3699 4727 1540
Size: 275 186 937 761 1028 2301
Fragments arranged by size:
2301 1028 937 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2048 2172 2187 3549 3634 4705 2048
Size: 124 15 1362 85 1071 2831
Fragments arranged by size:
2831 1362 1071 124 85 15
BsmI GAATG_Cn'
Cuts at: 2104 2999 3092 2104
Size: 895 93 4500
Fragments arranged by size:
4500 895 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2048 2061 2149 2172 2187 2607 2696
Size: 399 258 13 88 23 15 420 89
Cuts at: 2696 2710 2807 3549 3634 4705 1391
Size: 14 97 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 420 399 258 97 89
88 85 23 15 14 13
BspEI T'CCGG_A
Cuts at: 5151 5151
Size: 5488
BspHI T'CATG_A
Cuts at: 3377 5107 3377
Size: 1730 3758
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2110 2465 2843 844
Size: 1266 355 378 3489
Fragments arranged by size:
3489 1266 378 355
BsrBI CCG'CTC
Cuts at: 1394 1823 2302 3375 1394
Size: 429 479 1073 3507
Fragments arranged by size:
3507 1073 479 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2197 3983 4157 65
Size: 1183 949 1786 174 1396
Fragments arranged by size:
1786 1396 1183 949 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4132 4319 1700
Size: 110 2322 187 2869
Fragments arranged by size:
2869 2322 187 110
BsrGI T'GTAC_A
Cuts at: 96 2130 2730 96
Size: 2034 600 2854
Fragments arranged by size:
2854 2034 600
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5488
BssSI C'ACGA_G
Cuts at: 3548 4560 3548
Size: 1012 4476
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5488
BstBI TT'CG_AA
Cuts at: 4292 4292
Size: 5488
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5488
BstYI r'GATC_y
Cuts at: 1972 2818 3185 3570 3587 5039 5125 5137 5483
Size: 846 367 385 17 1452 86 12 346
Cuts at: 5483 1972
Size: 1977
Fragments arranged by size:
1977 1452 846 385 367 346 86 17
12
Bsu36I CC'TnA_GG
Cuts at: 2467 2467
Size: 5488
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4936
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2011 2758 487
Size: 683 56 785 747 3217
Fragments arranged by size:
3217 785 747 683 56
BtsI GCAGTG_nn'
Cuts at: 3004 3798 3818 3004
Size: 794 20 4674
Fragments arranged by size:
4674 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5488
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5453
DraI TTT'AAA
Cuts at: 2792 2792
Size: 5488
DraIII CAC_nnn'GTG
Cuts at: 2153 2153
Size: 5488
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4495 809
Size: 507 3179 1802
Fragments arranged by size:
3179 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2935 3824 5453
Size: 54 1425 50 275 18 1105 889 1629
Cuts at: 5453 8
Size: 43
Fragments arranged by size:
1629 1425 1105 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2935 1537
Size: 275 1123 4090
Fragments arranged by size:
4090 1123 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3418 1353
Size: 2065 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4075 4449 4595 387
Size: 1064 138 2486 374 146 1280
Fragments arranged by size:
2486 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2274 2338 2342 2501 3551 4148 4935
Size: 393 642 64 4 159 1050 597 787
Cuts at: 4935 5203 1239
Size: 268 1524
Fragments arranged by size:
1524 1050 787 642 597 393 268 159
64 4
EcoO109I rG'GnC_Cy
Cuts at: 2011 2272 2416 2692 2693 2011
Size: 261 144 276 1 4806
Fragments arranged by size:
4806 276 261 144 1
EcoRI G'AATT_C
Cuts at: 2797 3175 2797
Size: 378 5110
FspI TGC'GCA
Cuts at: 3994 3994
Size: 5488
HaeII r_GCGC'y
Cuts at: 1678 4635 1678
Size: 2957 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2336 2368 2518 2550 4129
Size: 32 135 32 764 32 150 32 1579
Cuts at: 4129 4161 4203 4235 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1579 764 150 135 42 32 32
32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2832 3078 669
Size: 988 281 894 246 3079
Fragments arranged by size:
3079 988 894 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5488
HpaI GTT'AAC
Cuts at: 3078 3078
Size: 5488
KpnI G_GTAC'C
Cuts at: 2813 2813
Size: 5488
MfeI C'AATT_G
Cuts at: 3087 3087
Size: 5488
MluI A'CGCG_T
Cuts at: 5364 5364
Size: 5488
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4602 4786 1305
Size: 3297 184 2007
Fragments arranged by size:
3297 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3666
Fragments arranged by size:
3666 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2738 3446 3805 3964 518
Size: 648 1572 708 359 159 2042
Fragments arranged by size:
2042 1572 708 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2192 2904 3581 4729 4974 1606
Size: 586 712 677 1148 245 2120
Fragments arranged by size:
2120 1148 712 677 586 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4936
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5488
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5488
NotI GC'GGCC_GC
Cuts at: 2935 2935
Size: 5488
NspI r_CATG'y
Cuts at: 1132 1229 2554 2846 4391 1132
Size: 97 1325 292 1545 2229
Fragments arranged by size:
2229 1545 1325 292 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5488
PciI A'CATG_T
Cuts at: 2550 4387 2550
Size: 1837 3651
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5488
PmeI GTTT'AAAC
Cuts at: 2792 2792
Size: 5488
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3557 3589 5070 5102 3557
Size: 32 1481 32 3943
Fragments arranged by size:
3943 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2011 2272 2416 2011
Size: 261 144 5083
Fragments arranged by size:
5083 261 144
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5488
PsiI TTA'TAA
Cuts at: 3058 3058
Size: 5488
PspOMI G'GGCC_C
Cuts at: 2692 2692
Size: 5488
PstI C_TGCA'G
Cuts at: 830 2840 830
Size: 2010 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5488
PvuII CAG'CTG
Cuts at: 2192 2192
Size: 5488
SalI G'TCGA_C
Cuts at: 1936 2830 1936
Size: 894 4594
SanDI GG'GwC_CC
Cuts at: 2272 2272
Size: 5488
SbfI CC_TGCA'GG
Cuts at: 2840 2840
Size: 5488
ScaI AGT'ACT
Cuts at: 3736 5448 3736
Size: 1712 3776
SexAI A'CCwGG_T
Cuts at: 2013 2013
Size: 5488
SfcI C'TryA_G
Cuts at: 826 1045 2836 3971 4652 4843 826
Size: 219 1791 1135 681 191 1471
Fragments arranged by size:
1791 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5488
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5488
SmaI CCC'GGG
Cuts at: 1872 2815 1872
Size: 943 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3592 4493 4755 820
Size: 197 926 1649 901 262 1553
Fragments arranged by size:
1649 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3279 493
Size: 2786 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5488
SphI G_CATG'C
Cuts at: 1132 2846 1132
Size: 1714 3774
SspI AAT'ATT
Cuts at: 5 52 3412 5
Size: 47 3360 2081
Fragments arranged by size:
3360 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5488
StyI C'CwwG_G
Cuts at: 513 1065 2736 2927 513
Size: 552 1671 191 3074
Fragments arranged by size:
3074 1671 552 191
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2170 2447 3515 3532 3685 3870 4315
Size: 1255 590 277 1068 17 153 185 445
Cuts at: 4315 325
Size: 1498
Fragments arranged by size:
1498 1255 1068 590 445 277 185 153
17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2130 2730 3734
Size: 274 80 33 51 1443 153 600 1004
Cuts at: 3734 5446 96
Size: 1712 138
Fragments arranged by size:
1712 1443 1004 600 274 153 138 80
51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5448 5480 5448
Size: 32 5456
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5488
XbaI T'CTAG_A
Cuts at: 2824 2824
Size: 5488
XcmI CCAnnnn_n'nnnnTGG
Cuts at: 2011 2011
Size: 5488
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5488
XmaI C'CCGG_G
Cuts at: 1870 2813 1870
Size: 943 4545
XmnI GAAnn'nnTTC
Cuts at: 3617 3617
Size: 5488
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3296 276
Size: 53 83 186 936 1762 2468
Fragments arranged by size:
2468 1762 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI
AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI
BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI
BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI
BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI
Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI
BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI
BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI
EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII
Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI
MscI MslI MspA1I NcoI NdeI NheI NotI NspI
PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI
PspOMI PstI PvuI PvuII SalI SanDI SbfI ScaI
SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XcmI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI
BplI BsiWI BsmBI BstXI BstZ17I EcoICRI EcoNI EcoRV
FalI FseI FspAI KasI NaeI NarI NgoMIV NruI
NsiI PacI PfoI PmlI PspXI PsrI RsrII SacI
SacII SapI SfiI SfoI SrfI SwaI