Restriction map for
pFN21AB3590
(Circular) (Six-base) MAPSORT of: pFN21AB3590.seq Check: 9344 from: 1 to: 5098
pFN21AB3590 5098 bp
With 182 enzymes: SgfI *
October 20, 2009 10:53 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2908 278
Size: 53 83 186 936 1372 2468
Fragments arranged by size:
2468 1372 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2441 1937
Size: 504 4594
Acc65I G'GTAC_C
Cuts at: 2419 2419
Size: 5098
AclI AA'CG_TT
Cuts at: 1563 3225 3598 1563
Size: 1662 373 3063
Fragments arranged by size:
3063 1662 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2132 3161 4545 4813 1632
Size: 500 1029 1384 268 1917
Fragments arranged by size:
1917 1384 1029 500 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4901
AflIII A'CryG_T
Cuts at: 1203 3997 4974 1203
Size: 2794 977 1327
Fragments arranged by size:
2794 1327 977
AgeI A'CCGG_T
Cuts at: 3929 3929
Size: 5098
AhdI GACnn_n'nnGTC
Cuts at: 3827 3827
Size: 5098
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5098
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5098
AlwNI CAG_nnn'CTG
Cuts at: 2280 2841 4413 2280
Size: 561 1572 2965
Fragments arranged by size:
2965 1572 561
ApaLI G'TGCA_C
Cuts at: 3155 4311 3155
Size: 1156 3942
ApoI r'AATT_y
Cuts at: 1493 2407 2633 2785 4894 1493
Size: 914 226 152 2109 1697
Fragments arranged by size:
2109 1697 914 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3652 160
Size: 872 2620 1606
Fragments arranged by size:
2620 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5098
AvaI C'yCGr_G
Cuts at: 1870 1943 2423 1870
Size: 73 480 4545
Fragments arranged by size:
4545 480 73
BamHI G'GATC_C
Cuts at: 2428 2795 2428
Size: 367 4731
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2348 2419 3874 618
Size: 325 217 627 561 71 1455 1842
Fragments arranged by size:
1842 1455 627 561 325 217 71
BanII G_rGCy'C
Cuts at: 1391 2417 1391
Size: 1026 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4127
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3289 3323 1903
Size: 34 1352 34 3678
Fragments arranged by size:
3678 1352 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 2990 4200 2990
Size: 1210 3888
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5098
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3709 136
Size: 107 122 71 631 605 2037 1525
Fragments arranged by size:
2037 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 2010 5093 2010
Size: 3083 2015
BlpI GC'TnA_GC
Cuts at: 2363 2515 2363
Size: 152 4946
Bme1580I G_kGCm'C
Cuts at: 1790 3159 4315 1790
Size: 1369 1156 2573
Fragments arranged by size:
2573 1369 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5098
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2829 3787 442
Size: 416 53 83 399 24 1412 958 1753
Fragments arranged by size:
1753 1412 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5098
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3758 1239
Size: 2519 2579
Bpu10I CC'TnA_GC
Cuts at: 2204 2204
Size: 5098
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3223 4088 4386 3223
Size: 865 298 3935
Fragments arranged by size:
3935 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3761 882
Size: 617 2262 2219
Fragments arranged by size:
2262 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2889 493
Size: 711 1685 2702
Fragments arranged by size:
2702 1685 711
BsaBI GATnn'nnATC
Cuts at: 5092 5092
Size: 5098
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2244 2905 3287 3922
Size: 53 83 186 936 711 661 382 635
Cuts at: 3922 275
Size: 1451
Fragments arranged by size:
1451 936 711 661 635 382 186 83
53
BsaWI w'CCGG_w
Cuts at: 3531 3929 4203 4350 4761 3531
Size: 398 274 147 411 3868
Fragments arranged by size:
3868 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4873
Fragments arranged by size:
4873 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5098
BseYI C'CCAG_C
Cuts at: 2344 4301 4797 2344
Size: 1957 496 2645
Fragments arranged by size:
2645 1957 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4525
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2313 2548 3309 4337 1540
Size: 275 186 312 235 761 1028 2301
Fragments arranged by size:
2301 1028 761 312 275 235 186
BsiHKAI G_wGCw'C
Cuts at: 3159 3244 4315 3159
Size: 85 1071 3942
Fragments arranged by size:
3942 1071 85
BsmI GAATG_Cn'
Cuts at: 2609 2702 2609
Size: 93 5005
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2417 3159 3244 4315 1391
Size: 399 627 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 627 399 85
BspEI T'CCGG_A
Cuts at: 4761 4761
Size: 5098
BspHI T'CATG_A
Cuts at: 2987 4717 2987
Size: 1730 3368
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2453 844
Size: 1609 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 2985 1394
Size: 429 1162 3507
Fragments arranged by size:
3507 1162 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3593 3767 65
Size: 1183 2345 174 1396
Fragments arranged by size:
2345 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 2168 2374 3742 3929 1700
Size: 110 358 206 1368 187 2869
Fragments arranged by size:
2869 1368 358 206 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5098
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5098
BssSI C'ACGA_G
Cuts at: 2183 3158 4170 2183
Size: 975 1012 3111
Fragments arranged by size:
3111 1012 975
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2277 794
Size: 1483 3615
BstBI TT'CG_AA
Cuts at: 3902 3902
Size: 5098
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5098
BstYI r'GATC_y
Cuts at: 1972 2010 2428 2795 3180 3197 4649 4735 4747
Size: 38 418 367 385 17 1452 86 12
Cuts at: 4747 5093 1972
Size: 346 1977
Fragments arranged by size:
1977 1452 418 385 367 346 86 38
17 12
BtgI C'CryG_G
Cuts at: 513 1065 2265 513
Size: 552 1200 3346
Fragments arranged by size:
3346 1200 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4359
Fragments arranged by size:
4359 683 56
BtsI GCAGTG_nn'
Cuts at: 2614 3408 3428 2614
Size: 794 20 4284
Fragments arranged by size:
4284 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5098
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5063
DraI TTT'AAA
Cuts at: 2402 2402
Size: 5098
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4105 809
Size: 507 2789 1802
Fragments arranged by size:
2789 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2194 2310 2545
Size: 54 1425 50 275 18 364 116 235
Cuts at: 2545 3434 5063 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 364 275 235 116 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2310 2545 1537
Size: 275 498 235 4090
Fragments arranged by size:
4090 498 275 235
EarI CTCTTCn'nnn_
Cuts at: 1353 2087 3028 1353
Size: 734 941 3423
Fragments arranged by size:
3423 941 734
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 3685 4059 4205 387
Size: 1064 138 2096 374 146 1280
Fragments arranged by size:
2096 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2132 3161 3758 4545 4813 1239
Size: 393 500 1029 597 787 268 1524
Fragments arranged by size:
1524 1029 787 597 500 393 268
EcoRI G'AATT_C
Cuts at: 2407 2785 2407
Size: 378 4720
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2032 2032
Size: 5098
FspI TGC'GCA
Cuts at: 3604 3604
Size: 5098
HaeII r_GCGC'y
Cuts at: 1678 4245 1678
Size: 2567 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3739 3771 3813 3845 1373
Size: 32 135 32 2167 32 42 32 2626
Fragments arranged by size:
2626 2167 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2442 2688 669
Size: 988 281 504 246 3079
Fragments arranged by size:
3079 988 504 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5098
HpaI GTT'AAC
Cuts at: 2688 2688
Size: 5098
KpnI G_GTAC'C
Cuts at: 2423 2423
Size: 5098
MfeI C'AATT_G
Cuts at: 2697 2697
Size: 5098
MluI A'CGCG_T
Cuts at: 4974 4974
Size: 5098
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2154 4212 4396 1305
Size: 849 2058 184 2007
Fragments arranged by size:
2058 2007 849 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2196 10
Size: 54 1425 343 364 2912
Fragments arranged by size:
2912 1425 364 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3056 3415 3574 518
Size: 648 1890 359 159 2042
Fragments arranged by size:
2042 1890 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2277 2514 3191 4339 4584 1606
Size: 671 237 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 671 245 237
NaeI GCC'GGC
Cuts at: 2170 2376 2170
Size: 206 4892
NcoI C'CATG_G
Cuts at: 513 1065 2265 513
Size: 552 1200 3346
Fragments arranged by size:
3346 1200 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5098
NgoMIV G'CCGG_C
Cuts at: 2168 2374 2168
Size: 206 4892
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5098
NotI GC'GGCC_GC
Cuts at: 2545 2545
Size: 5098
NspI r_CATG'y
Cuts at: 1132 1229 2456 4001 1132
Size: 97 1227 1545 2229
Fragments arranged by size:
2229 1545 1227 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5098
PciI A'CATG_T
Cuts at: 3997 3997
Size: 5098
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5098
PmeI GTTT'AAAC
Cuts at: 2402 2402
Size: 5098
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3167 3199 4680 4712 3167
Size: 32 1481 32 3553
Fragments arranged by size:
3553 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5098
PsiI TTA'TAA
Cuts at: 2668 2668
Size: 5098
PstI C_TGCA'G
Cuts at: 830 2450 830
Size: 1620 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5098
PvuII CAG'CTG
Cuts at: 2277 2277
Size: 5098
SalI G'TCGA_C
Cuts at: 1936 2440 1936
Size: 504 4594
SapI GCTCTTCn'nnn_
Cuts at: 2087 2087
Size: 5098
SbfI CC_TGCA'GG
Cuts at: 2450 2450
Size: 5098
ScaI AGT'ACT
Cuts at: 3346 5058 3346
Size: 1712 3386
SfcI C'TryA_G
Cuts at: 826 1045 2446 3581 4262 4453 826
Size: 219 1401 1135 681 191 1471
Fragments arranged by size:
1471 1401 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5098
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5098
SmaI CCC'GGG
Cuts at: 1872 2425 1872
Size: 553 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3202 4103 4365 820
Size: 197 926 1259 901 262 1553
Fragments arranged by size:
1553 1259 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2889 493
Size: 2396 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5098
SphI G_CATG'C
Cuts at: 1132 2456 1132
Size: 1324 3774
SspI AAT'ATT
Cuts at: 5 52 3022 5
Size: 47 2970 2081
Fragments arranged by size:
2970 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5098
StyI C'CwwG_G
Cuts at: 513 1065 2265 2537 513
Size: 552 1200 272 3074
Fragments arranged by size:
3074 1200 552 272
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2033 2336 3125 3142 3295 3480 3925
Size: 1255 453 303 789 17 153 185 445
Cuts at: 3925 325
Size: 1498
Fragments arranged by size:
1498 1255 789 453 445 303 185 153
17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2103 3344 5056
Size: 274 80 33 51 1443 126 1241 1712
Cuts at: 5056 96
Size: 138
Fragments arranged by size:
1712 1443 1241 274 138 126 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5058 5090 5058
Size: 32 5066
Tth111I GACn'n_nGTC
Cuts at: 1316 2155 1316
Size: 839 4259
XbaI T'CTAG_A
Cuts at: 2434 2434
Size: 5098
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5098
XmaI C'CCGG_G
Cuts at: 1870 2423 1870
Size: 553 4545
XmnI GAAnn'nnTTC
Cuts at: 2012 3227 2012
Size: 1215 3883
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2906 276
Size: 53 83 186 936 1372 2468
Fragments arranged by size:
2468 1372 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI
EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI
NcoI NdeI NgoMIV NheI NotI NspI PasI PciI
PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII
SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI
SmlI SnaBI SpeI SphI SspI StuI StyI TaqII
TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I
DraIII EcoICRI EcoNI EcoO109I EcoRV FseI FspAI KasI
NarI NruI NsiI PacI PfoI PmlI PpuMI PspOMI
PspXI PsrI RsrII SacI SacII SanDI SexAI SfiI
SfoI SrfI SwaI XcmI