Restriction map for
pFN21AB3077
(Circular) (Six-base) MAPSORT of: pFN21AB3077.seq Check: 4897 from: 1 to: 5491
pFN21AB3077 5491 bp
With 182 enzymes: SgfI *
October 20, 2009 10:53 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3301 278
Size: 53 83 186 936 1765 2468
Fragments arranged by size:
2468 1765 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2769 2834 1937
Size: 832 65 4594
Fragments arranged by size:
4594 832 65
Acc65I G'GTAC_C
Cuts at: 2812 2812
Size: 5491
AclI AA'CG_TT
Cuts at: 1563 3618 3991 1563
Size: 2055 373 3063
Fragments arranged by size:
3063 2055 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3554 4938 5206 1632
Size: 1922 1384 268 1917
Fragments arranged by size:
1922 1917 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5294
AflIII A'CryG_T
Cuts at: 1203 2535 4390 5367 1203
Size: 1332 1855 977 1327
Fragments arranged by size:
1855 1332 1327 977
AgeI A'CCGG_T
Cuts at: 4322 4322
Size: 5491
AhdI GACnn_n'nnGTC
Cuts at: 4220 4220
Size: 5491
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5491
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5491
AlwNI CAG_nnn'CTG
Cuts at: 3234 4806 3234
Size: 1572 3919
ApaLI G'TGCA_C
Cuts at: 2478 3548 4704 2478
Size: 1070 1156 3265
Fragments arranged by size:
3265 1156 1070
ApoI r'AATT_y
Cuts at: 1493 2800 3026 3178 5287 1493
Size: 1307 226 152 2109 1697
Fragments arranged by size:
2109 1697 1307 226 152
AseI AT'TA_AT
Cuts at: 160 1032 4045 160
Size: 872 3013 1606
Fragments arranged by size:
3013 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5491
AvaI C'yCGr_G
Cuts at: 1870 1943 2816 1870
Size: 73 873 4545
Fragments arranged by size:
4545 873 73
BamHI G'GATC_C
Cuts at: 2821 3188 2821
Size: 367 5124
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2242 2812 4267 618
Size: 325 217 627 455 570 1455 1842
Fragments arranged by size:
1842 1455 627 570 455 325 217
BanII G_rGCy'C
Cuts at: 1391 2810 1391
Size: 1419 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 2015 928
Size: 971 116 4404
Fragments arranged by size:
4404 971 116
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3682 3716 1903
Size: 34 1745 34 3678
Fragments arranged by size:
3678 1745 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3383 4593 3383
Size: 1210 4281
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5491
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2646 4102 136
Size: 107 122 71 631 605 974 1456 1525
Fragments arranged by size:
1525 1456 974 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5486 5486
Size: 5491
BlpI GC'TnA_GC
Cuts at: 2908 2908
Size: 5491
Bme1580I G_kGCm'C
Cuts at: 1790 2482 3552 4708 1790
Size: 692 1070 1156 2573
Fragments arranged by size:
2573 1156 1070 692
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5491
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2209 3222 4180
Size: 416 53 83 399 24 792 1013 958
Cuts at: 4180 442
Size: 1753
Fragments arranged by size:
1753 1013 958 792 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5491
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2085 2589 4151 1239
Size: 846 504 1562 2579
Fragments arranged by size:
2579 1562 846 504
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3616 4481 4779 3616
Size: 865 298 4328
Fragments arranged by size:
4328 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4154 882
Size: 617 2655 2219
Fragments arranged by size:
2655 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2477 3282 493
Size: 711 1273 805 2702
Fragments arranged by size:
2702 1273 805 711
BsaBI GATnn'nnATC
Cuts at: 5485 5485
Size: 5491
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3298 3680 4315 275
Size: 53 83 186 936 1765 382 635 1451
Fragments arranged by size:
1765 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3924 4322 4596 4743 5154 3924
Size: 398 274 147 411 4261
Fragments arranged by size:
4261 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 2616 2646 1178
Size: 30 165 30 1213 30 4023
Fragments arranged by size:
4023 1213 165 30 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5491
BseYI C'CCAG_C
Cuts at: 2145 4694 5190 2145
Size: 2549 496 2446
Fragments arranged by size:
2549 2446 496
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4918
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2941 3702 4730 1540
Size: 275 186 940 761 1028 2301
Fragments arranged by size:
2301 1028 940 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2482 3552 3637 4708 2482
Size: 1070 85 1071 3265
Fragments arranged by size:
3265 1071 1070 85
BsmI GAATG_Cn'
Cuts at: 3002 3095 3002
Size: 93 5398
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2482 2810 3552 3637 4708 1391
Size: 399 692 328 742 85 1071 2174
Fragments arranged by size:
2174 1071 742 692 399 328 85
BspEI T'CCGG_A
Cuts at: 5154 5154
Size: 5491
BspHI T'CATG_A
Cuts at: 2487 3380 5110 2487
Size: 893 1730 2868
Fragments arranged by size:
2868 1730 893
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2846 844
Size: 2002 3489
BsrBI CCG'CTC
Cuts at: 1394 1823 3378 1394
Size: 429 1555 3507
Fragments arranged by size:
3507 1555 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3986 4160 65
Size: 1183 2738 174 1396
Fragments arranged by size:
2738 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4135 4322 1700
Size: 110 2325 187 2869
Fragments arranged by size:
2869 2325 187 110
BsrGI T'GTAC_A
Cuts at: 96 2532 96
Size: 2436 3055
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5491
BssSI C'ACGA_G
Cuts at: 3551 4563 3551
Size: 1012 4479
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2060 794
Size: 1266 4225
BstBI TT'CG_AA
Cuts at: 4295 4295
Size: 5491
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5491
BstYI r'GATC_y
Cuts at: 1972 2821 3188 3573 3590 5042 5128 5140 5486
Size: 849 367 385 17 1452 86 12 346
Cuts at: 5486 1972
Size: 1977
Fragments arranged by size:
1977 1452 849 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 513
Size: 552 4939
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2391 487
Size: 683 56 1165 3587
Fragments arranged by size:
3587 1165 683 56
BtsI GCAGTG_nn'
Cuts at: 2125 2418 3007 3801 3821 2125
Size: 293 589 794 20 3795
Fragments arranged by size:
3795 794 589 293 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5491
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5456
DraI TTT'AAA
Cuts at: 2795 2795
Size: 5491
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4498 809
Size: 507 3182 1802
Fragments arranged by size:
3182 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2032 2938 3827
Size: 54 1425 50 275 18 202 906 889
Cuts at: 3827 5456 8
Size: 1629 43
Fragments arranged by size:
1629 1425 906 889 275 202 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2938 1537
Size: 275 1126 4090
Fragments arranged by size:
4090 1126 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2084 3421 1353
Size: 731 1337 3423
Fragments arranged by size:
3423 1337 731
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2170 4078 4452 4598 387
Size: 1064 138 581 1908 374 146 1280
Fragments arranged by size:
1908 1280 1064 581 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2085 2589 3554 4151 4938 5206 1239
Size: 393 453 504 965 597 787 268 1524
Fragments arranged by size:
1524 965 787 597 504 453 393 268
EcoRI G'AATT_C
Cuts at: 2800 3178 2800
Size: 378 5113
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2588 2588
Size: 5491
FspI TGC'GCA
Cuts at: 3997 3997
Size: 5491
HaeII r_GCGC'y
Cuts at: 1678 4638 1678
Size: 2960 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 4132 4164 4206 4238 1373
Size: 32 135 32 2560 32 42 32 2626
Fragments arranged by size:
2626 2560 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2835 3081 669
Size: 988 281 897 246 3079
Fragments arranged by size:
3079 988 897 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5491
HpaI GTT'AAC
Cuts at: 3081 3081
Size: 5491
KpnI G_GTAC'C
Cuts at: 2816 2816
Size: 5491
MfeI C'AATT_G
Cuts at: 3090 3090
Size: 5491
MluI A'CGCG_T
Cuts at: 5367 5367
Size: 5491
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4605 4789 1305
Size: 3300 184 2007
Fragments arranged by size:
3300 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2034 10
Size: 54 1425 343 202 3467
Fragments arranged by size:
3467 1425 343 202 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2763 3449 3808 3967 518
Size: 648 1597 686 359 159 2042
Fragments arranged by size:
2042 1597 686 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2038 2907 3584 4732 4977 1606
Size: 432 869 677 1148 245 2120
Fragments arranged by size:
2120 1148 869 677 432 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4939
NdeI CA'TA_TG
Cuts at: 387 2421 387
Size: 2034 3457
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5491
NotI GC'GGCC_GC
Cuts at: 2938 2938
Size: 5491
NspI r_CATG'y
Cuts at: 1132 1229 2539 2849 4394 1132
Size: 97 1310 310 1545 2229
Fragments arranged by size:
2229 1545 1310 310 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5491
PciI A'CATG_T
Cuts at: 2535 4390 2535
Size: 1855 3636
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5491
PmeI GTTT'AAAC
Cuts at: 2795 2795
Size: 5491
PmlI CAC'GTG
Cuts at: 2477 2477
Size: 5491
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3560 3592 5073 5105 3560
Size: 32 1481 32 3946
Fragments arranged by size:
3946 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5491
PsiI TTA'TAA
Cuts at: 2270 3061 2270
Size: 791 4700
PstI C_TGCA'G
Cuts at: 830 2174 2843 830
Size: 1344 669 3478
Fragments arranged by size:
3478 1344 669
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5491
SalI G'TCGA_C
Cuts at: 1936 2833 1936
Size: 897 4594
SbfI CC_TGCA'GG
Cuts at: 2843 2843
Size: 5491
ScaI AGT'ACT
Cuts at: 3739 5451 3739
Size: 1712 3779
SexAI A'CCwGG_T
Cuts at: 2238 2238
Size: 5491
SfcI C'TryA_G
Cuts at: 826 1045 2170 2839 3974 4655 4846 826
Size: 219 1125 669 1135 681 191 1471
Fragments arranged by size:
1471 1135 1125 681 669 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5491
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5491
SmaI CCC'GGG
Cuts at: 1872 2818 1872
Size: 946 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3595 4496 4758 820
Size: 197 926 1652 901 262 1553
Fragments arranged by size:
1652 1553 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3282 493
Size: 2789 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5491
SphI G_CATG'C
Cuts at: 1132 2849 1132
Size: 1717 3774
SspI AAT'ATT
Cuts at: 5 52 3415 5
Size: 47 3363 2081
Fragments arranged by size:
3363 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5491
StyI C'CwwG_G
Cuts at: 513 1065 2930 513
Size: 552 1865 3074
Fragments arranged by size:
3074 1865 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2175 3518 3535 3688 3873 4318 325
Size: 1255 595 1343 17 153 185 445 1498
Fragments arranged by size:
1498 1343 1255 595 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 2532 3737 5449
Size: 274 80 33 51 1443 555 1205 1712
Cuts at: 5449 96
Size: 138
Fragments arranged by size:
1712 1443 1205 555 274 138 80 51
33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2616 2648 5451 5483 2616
Size: 32 2803 32 2624
Fragments arranged by size:
2803 2624 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 2525 1316
Size: 1209 4282
XbaI T'CTAG_A
Cuts at: 2827 2827
Size: 5491
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5491
XmaI C'CCGG_G
Cuts at: 1870 2816 1870
Size: 946 4545
XmnI GAAnn'nnTTC
Cuts at: 3620 3620
Size: 5491
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3299 276
Size: 53 83 186 936 1765 2468
Fragments arranged by size:
2468 1765 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI
BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI
BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI
BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI
DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI
FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI
MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI
NheI NotI NspI PasI PciI PflMI PmeI PmlI
PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI
SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I
Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FseI FspAI
KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI
PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII
SanDI SapI SfiI SfoI SrfI SwaI XcmI