Restriction map for
pFN21AB0971
(Circular) (Six-base) MAPSORT of: pFN21AB0971.seq Check: 8966 from: 1 to: 5332
pFN21AB0971 5332 bp
With 182 enzymes: SgfI *
April 15, 2010 09:33 ..
AarI CACCTGCnnnn'nnnn_
Cuts at: 2024 2024
Size: 5332
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3142 278
Size: 53 83 186 936 1606 2468
Fragments arranged by size:
2468 1606 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2675 1937
Size: 738 4594
Acc65I G'GTAC_C
Cuts at: 2653 2653
Size: 5332
AclI AA'CG_TT
Cuts at: 1563 3459 3832 1563
Size: 1896 373 3063
Fragments arranged by size:
3063 1896 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 2552 3395 4779 5047 1632
Size: 920 843 1384 268 1917
Fragments arranged by size:
1917 1384 920 843 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5135
AflIII A'CryG_T
Cuts at: 1203 4231 5208 1203
Size: 3028 977 1327
Fragments arranged by size:
3028 1327 977
AgeI A'CCGG_T
Cuts at: 4163 4163
Size: 5332
AhdI GACnn_n'nnGTC
Cuts at: 4061 4061
Size: 5332
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5332
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2056 1184
Size: 872 4460
AlwNI CAG_nnn'CTG
Cuts at: 2116 3075 4647 2116
Size: 959 1572 2801
Fragments arranged by size:
2801 1572 959
ApaI G_GGCC'C
Cuts at: 2549 2549
Size: 5332
ApaLI G'TGCA_C
Cuts at: 2225 2553 3389 4545 2225
Size: 328 836 1156 3012
Fragments arranged by size:
3012 1156 836 328
ApoI r'AATT_y
Cuts at: 1493 2641 2867 3019 5128 1493
Size: 1148 226 152 2109 1697
Fragments arranged by size:
2109 1697 1148 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3886 160
Size: 872 2854 1606
Fragments arranged by size:
2854 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5332
AvaI C'yCGr_G
Cuts at: 1870 1943 2066 2091 2657 1870
Size: 73 123 25 566 4545
Fragments arranged by size:
4545 566 123 73 25
BamHI G'GATC_C
Cuts at: 2662 3029 2662
Size: 367 4965
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2062 2074 2653 4108 618
Size: 325 217 627 275 12 579 1455 1842
Fragments arranged by size:
1842 1455 627 579 325 275 217 12
BanII G_rGCy'C
Cuts at: 1391 2012 2549 2651 1391
Size: 621 537 102 4072
Fragments arranged by size:
4072 621 537 102
BbeI G_GCGC'C
Cuts at: 2066 2078 2066
Size: 12 5320
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4361
BbvCI CC'TCA_GC
Cuts at: 2109 2109
Size: 5332
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 2143 2177 3523 3557 1903
Size: 34 206 34 1346 34 3678
Fragments arranged by size:
3678 1346 206 34 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3224 4434 3224
Size: 1210 4122
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5332
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 2051 2096 3943
Size: 107 122 71 631 605 379 45 1847
Cuts at: 3943 136
Size: 1525
Fragments arranged by size:
1847 1525 631 605 379 122 107 71
45
BglII A'GATC_T
Cuts at: 5327 5327
Size: 5332
BlpI GC'TnA_GC
Cuts at: 2749 2749
Size: 5332
Bme1580I G_kGCm'C
Cuts at: 1790 2229 2549 2557 3393 4549 1790
Size: 439 320 8 836 1156 2573
Fragments arranged by size:
2573 1156 836 439 320 8
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5332
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2204 3063 4021
Size: 416 53 83 399 24 787 859 958
Cuts at: 4021 442
Size: 1753
Fragments arranged by size:
1753 958 859 787 416 399 83 53
24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5332
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 3992 1239
Size: 2753 2579
Bpu10I CC'TnA_GC
Cuts at: 2109 2109
Size: 5332
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3457 4322 4620 3457
Size: 865 298 4169
Fragments arranged by size:
4169 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 3995 882
Size: 617 2496 2219
Fragments arranged by size:
2496 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 3123 493
Size: 711 1919 2702
Fragments arranged by size:
2702 1919 711
BsaBI GATnn'nnATC
Cuts at: 5326 5326
Size: 5332
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2063 2075 3139 3521
Size: 53 83 186 936 530 12 1064 382
Cuts at: 3521 4156 275
Size: 635 1451
Fragments arranged by size:
1451 1064 936 635 530 382 186 83
53 12
BsaWI w'CCGG_w
Cuts at: 2256 2333 3765 4163 4437 4584 4995 2256
Size: 77 1432 398 274 147 411 2593
Fragments arranged by size:
2593 1432 411 398 274 147 77
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5107
Fragments arranged by size:
5107 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2084 1186
Size: 898 4434
BseYI C'CCAG_C
Cuts at: 2472 2538 4535 5031 2472
Size: 66 1997 496 2773
Fragments arranged by size:
2773 1997 496 66
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 2102 2225 1163
Size: 573 366 123 4270
Fragments arranged by size:
4270 573 366 123
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2782 3543 4571 1540
Size: 275 186 781 761 1028 2301
Fragments arranged by size:
2301 1028 781 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 2229 2557 3393 3478 4549 2229
Size: 328 836 85 1071 3012
Fragments arranged by size:
3012 1071 836 328 85
BsmI GAATG_Cn'
Cuts at: 2462 2843 2936 2462
Size: 381 93 4858
Fragments arranged by size:
4858 381 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2012 2229 2549 2557 2651 3393 3478
Size: 399 222 217 320 8 94 742 85
Cuts at: 3478 4549 1391
Size: 1071 2174
Fragments arranged by size:
2174 1071 742 399 320 222 217 94
85 8
BspEI T'CCGG_A
Cuts at: 2256 4995 2256
Size: 2739 2593
BspHI T'CATG_A
Cuts at: 3221 4951 3221
Size: 1730 3602
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2024 2687 844
Size: 1180 663 3489
Fragments arranged by size:
3489 1180 663
BsrBI CCG'CTC
Cuts at: 1394 1823 3219 1394
Size: 429 1396 3507
Fragments arranged by size:
3507 1396 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 3827 4001 65
Size: 1183 2579 174 1396
Fragments arranged by size:
2579 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3976 4163 1700
Size: 110 2166 187 2869
Fragments arranged by size:
2869 2166 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5332
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5332
BssSI C'ACGA_G
Cuts at: 3392 4404 3392
Size: 1012 4320
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5332
BstBI TT'CG_AA
Cuts at: 4136 4136
Size: 5332
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5332
BstXI CCAn_nnnn'nTGG
Cuts at: 2314 2314
Size: 5332
BstYI r'GATC_y
Cuts at: 1972 2662 3029 3414 3431 4883 4969 4981 5327
Size: 690 367 385 17 1452 86 12 346
Cuts at: 5327 1972
Size: 1977
Fragments arranged by size:
1977 1452 690 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3841
Fragments arranged by size:
3841 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4593
Fragments arranged by size:
4593 683 56
BtsI GCAGTG_nn'
Cuts at: 2286 2848 3642 3662 2286
Size: 562 794 20 3956
Fragments arranged by size:
3956 794 562 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5332
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5297
DraI TTT'AAA
Cuts at: 2636 2636
Size: 5332
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4339 809
Size: 507 3023 1802
Fragments arranged by size:
3023 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2372 2779 3668
Size: 54 1425 50 275 18 542 407 889
Cuts at: 3668 5297 8
Size: 1629 43
Fragments arranged by size:
1629 1425 889 542 407 275 54 50
43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2779 1537
Size: 275 967 4090
Fragments arranged by size:
4090 967 275
EarI CTCTTCn'nnn_
Cuts at: 1353 2052 3262 1353
Size: 699 1210 3423
Fragments arranged by size:
3423 1210 699
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2114 3919 4293 4439 387
Size: 1064 138 525 1805 374 146 1280
Fragments arranged by size:
1805 1280 1064 525 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2552 3395 3992 4779 5047 1239
Size: 393 920 843 597 787 268 1524
Fragments arranged by size:
1524 920 843 787 597 393 268
EcoO109I rG'GnC_Cy
Cuts at: 2545 2546 2545
Size: 1 5331
EcoRI G'AATT_C
Cuts at: 2641 3019 2641
Size: 378 4954
FalI AAGnnnnnCTTnnnnnnnn_nnnnn'
Cuts at: 2506 2506
Size: 5332
FspI TGC'GCA
Cuts at: 2153 3838 2153
Size: 1685 3647
FspAI rTGC'GCAy
Cuts at: 2153 2153
Size: 5332
HaeII r_GCGC'y
Cuts at: 1678 2066 2078 4479 1678
Size: 388 12 2401 2531
Fragments arranged by size:
2531 2401 388 12
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 3973 4005 4047 4079 1373
Size: 32 135 32 2401 32 42 32 2626
Fragments arranged by size:
2626 2401 135 42 32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2676 2922 669
Size: 988 281 738 246 3079
Fragments arranged by size:
3079 988 738 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5332
HpaI GTT'AAC
Cuts at: 2922 2922
Size: 5332
KasI G'GCGC_C
Cuts at: 2062 2074 2062
Size: 12 5320
KpnI G_GTAC'C
Cuts at: 2657 2657
Size: 5332
MfeI C'AATT_G
Cuts at: 2931 2931
Size: 5332
MluI A'CGCG_T
Cuts at: 5208 5208
Size: 5332
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2043 4446 4630 1305
Size: 738 2403 184 2007
Fragments arranged by size:
2403 2007 738 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3510
Fragments arranged by size:
3510 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3290 3649 3808 518
Size: 648 2124 359 159 2042
Fragments arranged by size:
2124 2042 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2113 2530 2748 3425 4573 4818 1606
Size: 507 417 218 677 1148 245 2120
Fragments arranged by size:
2120 1148 677 507 417 245 218
NarI GG'CG_CC
Cuts at: 2063 2075 2063
Size: 12 5320
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3841
Fragments arranged by size:
3841 939 552
NdeI CA'TA_TG
Cuts at: 387 2511 387
Size: 2124 3208
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5332
NotI GC'GGCC_GC
Cuts at: 2779 2779
Size: 5332
NspI r_CATG'y
Cuts at: 1132 1229 2392 2690 4235 1132
Size: 97 1163 298 1545 2229
Fragments arranged by size:
2229 1545 1163 298 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5332
PciI A'CATG_T
Cuts at: 4231 4231
Size: 5332
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5332
PfoI T'CCnGG_A
Cuts at: 2616 2616
Size: 5332
PmeI GTTT'AAAC
Cuts at: 2636 2636
Size: 5332
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3401 3433 4914 4946 3401
Size: 32 1481 32 3787
Fragments arranged by size:
3787 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5332
PsiI TTA'TAA
Cuts at: 2902 2902
Size: 5332
PspOMI G'GGCC_C
Cuts at: 2545 2545
Size: 5332
PstI C_TGCA'G
Cuts at: 830 2684 830
Size: 1854 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5332
PvuII CAG'CTG
Cuts at: 2113 2113
Size: 5332
SalI G'TCGA_C
Cuts at: 1936 2674 1936
Size: 738 4594
SbfI CC_TGCA'GG
Cuts at: 2684 2684
Size: 5332
ScaI AGT'ACT
Cuts at: 3580 5292 3580
Size: 1712 3620
SexAI A'CCwGG_T
Cuts at: 2338 2338
Size: 5332
SfcI C'TryA_G
Cuts at: 826 1045 2680 3815 4496 4687 826
Size: 219 1635 1135 681 191 1471
Fragments arranged by size:
1635 1471 1135 681 219 191
SfoI GGC'GCC
Cuts at: 2064 2076 2064
Size: 12 5320
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5332
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5332
SmaI CCC'GGG
Cuts at: 1872 2093 2659 1872
Size: 221 566 4545
Fragments arranged by size:
4545 566 221
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3436 4337 4599 820
Size: 197 926 1493 901 262 1553
Fragments arranged by size:
1553 1493 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 3123 493
Size: 2630 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5332
SphI G_CATG'C
Cuts at: 1132 2392 2690 1132
Size: 1260 298 3774
Fragments arranged by size:
3774 1260 298
SrfI GCCC'GGGC
Cuts at: 2093 2093
Size: 5332
SspI AAT'ATT
Cuts at: 5 52 3256 5
Size: 47 3204 2081
Fragments arranged by size:
3204 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5332
StyI C'CwwG_G
Cuts at: 513 1065 2004 2046 2307 2451 2771 513
Size: 552 939 42 261 144 320 3074
Fragments arranged by size:
3074 939 552 320 261 144 42
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3359 3376 3529 3714 4159 325
Size: 1255 1779 17 153 185 445 1498
Fragments arranged by size:
1779 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3578 5290 96
Size: 274 80 33 51 1443 1601 1712 138
Fragments arranged by size:
1712 1601 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5292 5324 5292
Size: 32 5300
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5332
XbaI T'CTAG_A
Cuts at: 2437 2668 2437
Size: 231 5101
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5332
XmaI C'CCGG_G
Cuts at: 1870 2091 2657 1870
Size: 221 566 4545
Fragments arranged by size:
4545 566 221
XmnI GAAnn'nnTTC
Cuts at: 3461 3461
Size: 5332
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3140 276
Size: 53 83 186 936 1606 2468
Fragments arranged by size:
2468 1606 936 186 83 53
Enzymes that do cut:
AarI AatII AccI Acc65I AclI AcuI AflII AflIII
AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI
AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI
BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I
BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI
BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI
BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI
BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI
BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI
EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FalI
FspI FspAI HaeII Hin4I HincII HindIII HpaI KasI
KpnI MfeI MluI MmeI MscI MslI MspA1I NarI
NcoI NdeI NheI NotI NspI PasI PciI PflMI
PfoI PmeI PpiI PshAI PsiI PspOMI PstI PvuI
PvuII SalI SbfI ScaI SexAI SfcI SfoI SgfI
SgrAI SmaI SmlI SnaBI SpeI SphI SrfI SspI
StuI StyI TaqII TatI TstI Tth111I XbaI XhoI
XmaI XmnI ZraI
Enzymes that do not cut:
AfeI AloI AscI AvrII BaeI BfrBI BplI BsiWI
BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FseI
NaeI NgoMIV NruI NsiI PacI PmlI PpuMI PspXI
PsrI RsrII SacI SacII SanDI SapI SfiI SwaI
XcmI