FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9694, 316 aa
  1>>>pF1KE9694 316 - 316 aa - 316 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6321+/-0.000884; mu= 5.9169+/- 0.053
 mean_var=165.4809+/-32.198, 0's: 0 Z-trim(111.3): 24  B-trim: 2 in 1/52
 Lambda= 0.099701
 statistics sampled from 12254 (12270) to 12254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.377), width:  16
 Scan time:  2.410

The best scores are:                                      opt bits E(32554)
CCDS42021.1 KNSTRN gene_id:90417|Hs108|chr15       ( 316) 1990 297.9 6.8e-81
CCDS45226.1 KNSTRN gene_id:90417|Hs108|chr15       ( 286) 1731 260.6   1e-69
CCDS45227.1 KNSTRN gene_id:90417|Hs108|chr15       ( 241) 1460 221.6 4.9e-58


>>CCDS42021.1 KNSTRN gene_id:90417|Hs108|chr15            (316 aa)
 initn: 1990 init1: 1990 opt: 1990  Z-score: 1565.8  bits: 297.9 E(32554): 6.8e-81
Smith-Waterman score: 1990; 98.7% identity (99.1% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KE9 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQEADLAGGTTVAAGNLLNESEK
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS42 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 DCGQDRRAPGVQPCLLVTMTSVVKTVYSLQPSSALSGGQPADTQTRATSKSLLPVRSKEV
       :::::::::::::: :::::::::::::::: ::::::::::::::::::::::::::::
CCDS42 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGGETLASRQE
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS42 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGSETLASRQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV
              250       260       270       280       290       300

              310      
pF1KE9 NDLTTALKEMEQLLEM
       ::::::::::::::::
CCDS42 NDLTTALKEMEQLLEM
              310      

>>CCDS45226.1 KNSTRN gene_id:90417|Hs108|chr15            (286 aa)
 initn: 1731 init1: 1731 opt: 1731  Z-score: 1365.1  bits: 260.6 E(32554): 1e-69
Smith-Waterman score: 1731; 98.5% identity (98.9% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KE9 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQEADLAGGTTVAAGNLLNESEK
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS45 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 DCGQDRRAPGVQPCLLVTMTSVVKTVYSLQPSSALSGGQPADTQTRATSKSLLPVRSKEV
       :::::::::::::: :::::::::::::::: ::::::::::::::::::::::::::::
CCDS45 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGGETLASRQE
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS45 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGSETLASRQE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV
       ::::::::::::::::::::::::::::::::::                          
CCDS45 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQIAWMNHGILHQM              
              250       260       270       280                    

              310      
pF1KE9 NDLTTALKEMEQLLEM

>>CCDS45227.1 KNSTRN gene_id:90417|Hs108|chr15            (241 aa)
 initn: 1460 init1: 1460 opt: 1460  Z-score: 1155.4  bits: 221.6 E(32554): 4.9e-58
Smith-Waterman score: 1460; 98.7% identity (98.7% similar) in 228 aa overlap (1-228:1-228)

               10        20        30        40        50        60
pF1KE9 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQEADLAGGTTVAAGNLLNESEK
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS45 MAAPEAPPLDRVFRTTWLSTECDSHPLPPSYRKFLFETQAADLAGGTTVAAGNLLNESEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 DCGQDRRAPGVQPCLLVTMTSVVKTVYSLQPSSALSGGQPADTQTRATSKSLLPVRSKEV
       :::::::::::::: :::::::::::::::: ::::::::::::::::::::::::::::
CCDS45 DCGQDRRAPGVQPCRLVTMTSVVKTVYSLQPPSALSGGQPADTQTRATSKSLLPVRSKEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DVSKQLHSGGPENDVTKITKLRRENGQMKATDTATRRNVRKGYKPLSKQKSEEELKDKNQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPALGGETLASRQE
       ::::::::::::::::::::::::::::::::::::::::::::::::            
CCDS45 LLEAVNKQLHQKLTETQGELKDLTQKVELLEKFRDNCLAILESKGLDPVAVRNFARGAEA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 STTDHMDSMLLLETLQEELKLFNETAKKQMEELQALKVKLEMKEERVRFLEQQTLCNNQV
                                                                   
CCDS45 F                                                           
                                                                   




316 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:36:44 2016 done: Tue Nov  8 10:36:44 2016
 Total Scan time:  2.410 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]