FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9691, 605 aa
  1>>>pF1KE9691 605 - 605 aa - 605 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.4326+/-0.00159; mu= -7.7322+/- 0.093
 mean_var=459.2699+/-103.958, 0's: 0 Z-trim(107.5): 116  B-trim: 209 in 2/52
 Lambda= 0.059847
 statistics sampled from 9576 (9636) to 9576 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.296), width:  16
 Scan time:  3.210

The best scores are:                                      opt bits E(32554)
CCDS4370.1 SPDL1 gene_id:54908|Hs108|chr5          ( 605) 3799 343.4   5e-94


>>CCDS4370.1 SPDL1 gene_id:54908|Hs108|chr5               (605 aa)
 initn: 3799 init1: 3799 opt: 3799  Z-score: 1801.6  bits: 343.4 E(32554): 5e-94
Smith-Waterman score: 3799; 99.7% identity (99.8% similar) in 605 aa overlap (1-605:1-605)

               10        20        30        40        50        60
pF1KE9 MEADIITNLRCRLKEAEEERLKAAQYGLQLVESQNELQNQLDKCRNEMMTMTESYEQEKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEADIITNLRCRLKEAEEERLKAAQYGLQLVESQNELQNQLDKCRNEMMTMTESYEQEKY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 TLQREVELKSRMLESLSCECEAIKQQQKMHLEKLEEQLSRSHGQEVNELKTKIEKLKVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TLQREVELKSRMLESLSCECEAIKQQQKMHLEKLEEQLSRSHGQEVNELKTKIEKLKVEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 DEARLSEKQLKHQVDHQKELLSCKSEELRVMSERVQESMSSEMLALQIELTEMESMKTTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DEARLSEKQLKHQVDHQKELLSCKSEELRVMSERVQESMSSEMLALQIELTEMESMKTTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 KEEVNELQYRQEQLELLITNLMRQVDRLKEEKEEREKEAVSYYNALEKARVANQDLQVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KEEVNELQYRQEQLELLITNLMRQVDRLKEEKEEREKEAVSYYNALEKARVANQDLQVQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 DQALQQALDPNSKGNSLFAEVEDRRAAMERQLISMKVKYQSLKKQNVFNREQMQRMKLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DQALQQALDPNSKGNSLFAEVEDRRAAMERQLISMKVKYQSLKKQNVFNREQMQRMKLQI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE9 ATLLQMKGSQTEFEQQERLLAMLEQKNGEIKHLLGEIRNLEKFKNLYDSMESKPSVDSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ATLLQMKGSQTEFEQQERLLAMLEQKNGEIKHLLGEIRNLEKFKNLYDSMESKPSVDSGT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE9 LEDNTYYTDLLQMKLDNLNKEIESTKGELSIQRMKALFESQRALDIERKLFANERCLQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LEDNTYYTDLLQMKLDNLNKEIESTKGELSIQRMKALFESQRALDIERKLFANERCLQLS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE9 ESENMKLRAKLDELKLKYEPEETVEVPVLKKRREVLPVDITTAKDACVNNSALGGEVYRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ESENMKLRAKLDELKLKYEPEETVEVPVLKKRREVLPVDITTAKDACVNNSALGGEVYRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE9 PPQKEETQSCPNSLEDNNLQLEKSVSIHTPVVSLSPHKNLPVDMQLKKEKKCVKLIGVPA
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS43 PPQKEETQSCPNSLEDNNLQLEKSVSIYTPVVSLSPHKNLPVDMQLKKEKKCVKLIGVPA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE9 DAEALSERSGNTPNSPRLAAESKLQTEVKEGKETSSKLEKETCKKSHPILYVSSKSTPET
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS43 DAEALSERSGNTPNSPRLAAESKLQTEVKEGKETSSKLEKETCKKLHPILYVSSKSTPET
              550       560       570       580       590       600

            
pF1KE9 QCPQQ
       :::::
CCDS43 QCPQQ
            




605 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:42:36 2016 done: Tue Nov  8 10:42:36 2016
 Total Scan time:  3.210 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]