FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9686, 533 aa
  1>>>pF1KE9686 533 - 533 aa - 533 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8173+/-0.000809; mu= 11.4262+/- 0.049
 mean_var=91.3351+/-18.121, 0's: 0 Z-trim(109.2): 25  B-trim: 74 in 1/51
 Lambda= 0.134201
 statistics sampled from 10698 (10708) to 10698 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.329), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS58344.1 FAN1 gene_id:22909|Hs108|chr15         ( 533) 3455 679.0 3.7e-195
CCDS32186.1 FAN1 gene_id:22909|Hs108|chr15         (1017) 3397 667.8 1.6e-191


>>CCDS58344.1 FAN1 gene_id:22909|Hs108|chr15              (533 aa)
 initn: 3415 init1: 3415 opt: 3455  Z-score: 3617.1  bits: 679.0 E(32554): 3.7e-195
Smith-Waterman score: 3455; 99.6% identity (99.6% similar) in 533 aa overlap (1-533:2-533)

                10        20        30        40        50         
pF1KE9  MSEGKPPDKKKRPRRSLSISKNKKKASNSIISCFNNAPPAKLACPVCSKMVPRYDLNRH
        :::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MMSEGKPPDKK-RPRRSLSISKNKKKASNSIISCFNNAPPAKLACPVCSKMVPRYDLNRH
               10         20        30        40        50         

      60        70        80        90       100       110         
pF1KE9 LDEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPGQSDSAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LDEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPGQSDSAKR
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KE9 EVKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASKLSRKYVKAKKSIDKDEEFAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EVKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASKLSRKYVKAKKSIDKDEEFAGS
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KE9 SPQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKCDSLKEECIPEHMVRESKIMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS58 SPQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKCDSLKEECIPEHMVRGSKIMEA
     180       190       200       210       220       230         

     240       250       260       270       280       290         
pF1KE9 ESQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKSTSEDSLVKQECIKEVVEKREAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ESQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKSTSEDSLVKQECIKEVVEKREAC
     240       250       260       270       280       290         

     300       310       320       330       340       350         
pF1KE9 HCEEVKMTVASEAKIQLSDSEAKSHSSADDASAWSNIQEAPLQDDSCLNNDIPHSIPLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 HCEEVKMTVASEAKIQLSDSEAKSHSSADDASAWSNIQEAPLQDDSCLNNDIPHSIPLEQ
     300       310       320       330       340       350         

     360       370       380       390       400       410         
pF1KE9 GSSCNGPGQTTGHPYYLRSFLVVLKTVLENEDDMLLFDEQEKGIVTKFYQLSATGQKLYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GSSCNGPGQTTGHPYYLRSFLVVLKTVLENEDDMLLFDEQEKGIVTKFYQLSATGQKLYV
     360       370       380       390       400       410         

     420       430       440       450       460       470         
pF1KE9 RLFQRKLSWIKMTKLEYEEIALDLTPVIEELTNAGFLQTESELQELSEVLELLSAPELKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RLFQRKLSWIKMTKLEYEEIALDLTPVIEELTNAGFLQTESELQELSEVLELLSAPELKS
     420       430       440       450       460       470         

     480       490       500       510       520       530   
pF1KE9 LAKTFHLVNPNGQKQQLVDAFLKLAKQRSVCTWGKNKPGIGAVILKRFCWLLLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LAKTFHLVNPNGQKQQLVDAFLKLAKQRSVCTWGKNKPGIGAVILKRFCWLLLQ
     480       490       500       510       520       530   

>>CCDS32186.1 FAN1 gene_id:22909|Hs108|chr15              (1017 aa)
 initn: 3357 init1: 3357 opt: 3397  Z-score: 3551.8  bits: 667.8 E(32554): 1.6e-191
Smith-Waterman score: 3397; 99.6% identity (99.6% similar) in 526 aa overlap (1-526:2-526)

                10        20        30        40        50         
pF1KE9  MSEGKPPDKKKRPRRSLSISKNKKKASNSIISCFNNAPPAKLACPVCSKMVPRYDLNRH
        :::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MMSEGKPPDKK-RPRRSLSISKNKKKASNSIISCFNNAPPAKLACPVCSKMVPRYDLNRH
               10         20        30        40        50         

      60        70        80        90       100       110         
pF1KE9 LDEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPGQSDSAKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LDEMCANNDFVQVDPGQVGLINSNVSMVDLTSVTLEDVTPKKSPPPKTNLTPGQSDSAKR
      60        70        80        90       100       110         

     120       130       140       150       160       170         
pF1KE9 EVKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASKLSRKYVKAKKSIDKDEEFAGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EVKQKISPYFKSNDVVCKNQDELRNRSVKVICLGSLASKLSRKYVKAKKSIDKDEEFAGS
     120       130       140       150       160       170         

     180       190       200       210       220       230         
pF1KE9 SPQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKCDSLKEECIPEHMVRESKIMEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS32 SPQSSKSTVVKSLIDNSSEIEDEDQILENSSQKENVFKCDSLKEECIPEHMVRGSKIMEA
     180       190       200       210       220       230         

     240       250       260       270       280       290         
pF1KE9 ESQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKSTSEDSLVKQECIKEVVEKREAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ESQKATRECEKSALTPGFSDNAIMLFSPDFTLRNTLKSTSEDSLVKQECIKEVVEKREAC
     240       250       260       270       280       290         

     300       310       320       330       340       350         
pF1KE9 HCEEVKMTVASEAKIQLSDSEAKSHSSADDASAWSNIQEAPLQDDSCLNNDIPHSIPLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HCEEVKMTVASEAKIQLSDSEAKSHSSADDASAWSNIQEAPLQDDSCLNNDIPHSIPLEQ
     300       310       320       330       340       350         

     360       370       380       390       400       410         
pF1KE9 GSSCNGPGQTTGHPYYLRSFLVVLKTVLENEDDMLLFDEQEKGIVTKFYQLSATGQKLYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GSSCNGPGQTTGHPYYLRSFLVVLKTVLENEDDMLLFDEQEKGIVTKFYQLSATGQKLYV
     360       370       380       390       400       410         

     420       430       440       450       460       470         
pF1KE9 RLFQRKLSWIKMTKLEYEEIALDLTPVIEELTNAGFLQTESELQELSEVLELLSAPELKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RLFQRKLSWIKMTKLEYEEIALDLTPVIEELTNAGFLQTESELQELSEVLELLSAPELKS
     420       430       440       450       460       470         

     480       490       500       510       520       530         
pF1KE9 LAKTFHLVNPNGQKQQLVDAFLKLAKQRSVCTWGKNKPGIGAVILKRFCWLLLQ      
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS32 LAKTFHLVNPNGQKQQLVDAFLKLAKQRSVCTWGKNKPGIGAVILKRAKALAGQSVRICK
     480       490       500       510       520       530         

CCDS32 GPRAVFSRILLLFSLTDSMEDEDAACGGQGQLSTVLLVNLGRMEFPSYTINRKTHIFQDR
     540       550       560       570       580       590         




533 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:34:27 2016 done: Tue Nov  8 10:34:27 2016
 Total Scan time:  2.590 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]