FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9682, 323 aa
  1>>>pF1KE9682 323 - 323 aa - 323 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2654+/-0.000887; mu= 7.6299+/- 0.054
 mean_var=134.8043+/-26.756, 0's: 0 Z-trim(109.9): 19  B-trim: 0 in 0/52
 Lambda= 0.110464
 statistics sampled from 11224 (11232) to 11224 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.345), width:  16
 Scan time:  1.700

The best scores are:                                      opt bits E(32554)
CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14       ( 323) 2156 354.7 5.6e-98
CCDS8135.1 BRMS1 gene_id:25855|Hs108|chr11         ( 246)  858 147.8 8.4e-36
CCDS44654.1 BRMS1 gene_id:25855|Hs108|chr11        ( 290)  850 146.6 2.3e-35
CCDS44993.1 SUDS3 gene_id:64426|Hs108|chr12        ( 328)  456 83.8   2e-16


>>CCDS32066.1 BRMS1L gene_id:84312|Hs108|chr14            (323 aa)
 initn: 2156 init1: 2156 opt: 2156  Z-score: 1872.5  bits: 354.7 E(32554): 5.6e-98
Smith-Waterman score: 2156; 100.0% identity (100.0% similar) in 323 aa overlap (1-323:1-323)

               10        20        30        40        50        60
pF1KE9 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 LWNDELQSRKKRKDPFSPDKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LWNDELQSRKKRKDPFSPDKKKPVVVSGPYIVYMLQDLDILEDWTTIRKAMATLGPHRVK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE9 TEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWFKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINHDEVWFKR
              250       260       270       280       290       300

              310       320   
pF1KE9 PDGSKSKLYISQLQKGKYSIKHS
       :::::::::::::::::::::::
CCDS32 PDGSKSKLYISQLQKGKYSIKHS
              310       320   

>>CCDS8135.1 BRMS1 gene_id:25855|Hs108|chr11              (246 aa)
 initn: 894 init1: 631 opt: 858  Z-score: 756.3  bits: 147.8 E(32554): 8.4e-36
Smith-Waterman score: 858; 53.4% identity (82.5% similar) in 251 aa overlap (1-244:1-246)

               10        20           30        40         50      
pF1KE9 MPVHSRGDKKETNHHDEMEVD---YAENEGSSSEDEDTESSSVSE-DGDSSEMDDEDCER
       :::.    .:.:   .:::..    :: .:   :.:. .:.: .: . .:::::::: ::
CCDS81 MPVQP--PSKDT---EEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYER
                 10           20        30        40        50     

         60        70        80        90       100       110      
pF1KE9 RRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIR
       :: ::..:: .:::::..::..:..:::::.  .:.:: : .:::: :::. ::....::
CCDS81 RRSECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIR
          60        70        80        90       100       110     

        120       130       140       150       160       170      
pF1KE9 TKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSID
        .:::::. .::. ..::::::.:...:: ::::::::::.:.::.:.:.::::::.:.:
CCDS81 IQVAGIYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLD
         120       130       140       150       160       170     

        180       190         200        210       220       230   
pF1KE9 ITSELWNDELQSRKKRK--DPFSPDKKKPV-VVSGPYIVYMLQDLDILEDWTTIRKAMAT
       ..:: :.:.:..: . .  : . :.:.: . .:::::::::::..:::::::.:.:: :.
CCDS81 LSSEWWDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAA
         180       190       200       210       220       230     

           240       250       260       270       280       290   
pF1KE9 LGPHRVKTEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINH
       ..:.. :.. :                                                 
CCDS81 VSPQKRKSDGP                                                 
         240                                                       

>>CCDS44654.1 BRMS1 gene_id:25855|Hs108|chr11             (290 aa)
 initn: 886 init1: 631 opt: 850  Z-score: 748.3  bits: 146.6 E(32554): 2.3e-35
Smith-Waterman score: 850; 53.4% identity (82.7% similar) in 249 aa overlap (1-242:1-244)

               10        20           30        40         50      
pF1KE9 MPVHSRGDKKETNHHDEMEVD---YAENEGSSSEDEDTESSSVSE-DGDSSEMDDEDCER
       :::.    .:.:   .:::..    :: .:   :.:. .:.: .: . .:::::::: ::
CCDS44 MPVQP--PSKDT---EEMEAEGDSAAEMNGEEEESEEERSGSQTESEEESSEMDDEDYER
                 10           20        30        40        50     

         60        70        80        90       100       110      
pF1KE9 RRMECLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIR
       :: ::..:: .:::::..::..:..:::::.  .:.:: : .:::: :::. ::....::
CCDS44 RRSECVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEVGAERAPEYTEPLGGLQRSLKIR
          60        70        80        90       100       110     

        120       130       140       150       160       170      
pF1KE9 TKVAGIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSID
        .:::::. .::. ..::::::.:...:: ::::::::::.:.::.:.:.::::::.:.:
CCDS44 IQVAGIYKGFCLDVIRNKYECELQGAKQHLESEKLLLYDTLQGELQERIQRLEEDRQSLD
         120       130       140       150       160       170     

        180       190         200        210       220       230   
pF1KE9 ITSELWNDELQSRKKRK--DPFSPDKKKPV-VVSGPYIVYMLQDLDILEDWTTIRKAMAT
       ..:: :.:.:..: . .  : . :.:.: . .:::::::::::..:::::::.:.:: :.
CCDS44 LSSEWWDDKLHARGSSRSWDSLPPSKRKKAPLVSGPYIVYMLQEIDILEDWTAIKKARAA
         180       190       200       210       220       230     

           240       250       260       270       280       290   
pF1KE9 LGPHRVKTEPPVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVITTINH
       ..:.. :..                                                   
CCDS44 VSPQKRKSDDRRTHRPLRVCPARLLWCCWALPLHLALAWTPPLPSSRPAQLWPWS     
         240       250       260       270       280       290     

>>CCDS44993.1 SUDS3 gene_id:64426|Hs108|chr12             (328 aa)
 initn: 265 init1: 154 opt: 456  Z-score: 408.2  bits: 83.8 E(32554): 2e-16
Smith-Waterman score: 456; 29.0% identity (64.4% similar) in 303 aa overlap (31-321:26-323)

               10        20        30        40        50        60
pF1KE9 MPVHSRGDKKETNHHDEMEVDYAENEGSSSEDEDTESSSVSEDGDSSEMDDEDCERRRME
                                     :::. ::.  .: .  .. .::: :     
CCDS44      MSAAGLLAPAPAQAGAPPAPEYYPEEDEELESAEDDERSCRGRESDEDTE--DAS
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE9 CLDEMSNLEKQFTDLKDQLYKERLSQVDAKLQEVIAGKAPEYLEPLATLQENMQIRTKVA
         :  .. :......:.:.:...:...  .::..  :   :: . .  :..... : . :
CCDS44 ETDLAKHDEEDYVEMKEQMYQDKLASLKRQLQQLQEGTLQEYQKRMKKLDQQYKERIRNA
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KE9 GIYRELCLESVKNKYECEIQASRQHCESEKLLLYDTVQSELEEKIRRLEEDRHSIDITSE
        .. .:  :.:. .:  : .:. .. :..:. : ... .::::: . .:... ....:..
CCDS44 ELFLQLETEQVERNYIKEKKAAVKEFEDKKVELKENLIAELEEKKKMIENEKLTMELTGD
           120       130       140       150       160       170   

               190           200        210       220       230    
pF1KE9 -LWNDELQSRKKRK---DPFS-PDKK-KPVVVSGPYIVYMLQDLDILEDWTTIRKAMATL
        .    ...:: :.   ::   :::. ::   .   . :.: : .:.::  :. :  .  
CCDS44 SMEVKPIMTRKLRRRPNDPVPIPDKRRKP---APAQLNYLLTDEQIMEDLRTLNKLKSPK
           180       190       200          210       220       230

          240            250       260       270       280         
pF1KE9 GPHRVKTE---P--PVKLEKHLHSARSEEGRLYYDGEWYIRGQTICIDKKDECPTSAVIT
        :   ..    :  :..   .   :: :.:.:::: .:: ..:.: ...::.   : ::.
CCDS44 RPASPSSPEHLPATPAESPAQRFEARIEDGKLYYDKRWYHKSQAIYLESKDNQKLSCVIS
              240       250       260       270       280       290

     290       300        310       320      
pF1KE9 TINHDEVWFKRP-DGSKSKLYISQLQKGKYSIKHS   
       ... .:.: ..  :..: ..:..:::.: . :.     
CCDS44 SVGANEIWVRKTSDSTKMRIYLGQLQRGLFVIRRRSAA
              300       310       320        




323 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:31:08 2016 done: Tue Nov  8 10:31:08 2016
 Total Scan time:  1.700 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]