Result of FASTA (omim) for
pFN21AE9676
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9676, 288 aa
1>>>pF1KE9676 288 - 288 aa - 288 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6324+/-0.000351; mu= 13.6290+/- 0.022
mean_var=71.6011+/-14.364, 0's: 0 Z-trim(114.2): 22 B-trim: 18 in 1/52
Lambda= 0.151570
statistics sampled from 23923 (23942) to 23923 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.281), width: 16
Scan time: 6.550
The best scores are: opt bits E(85289)
NP_001012267 (OMIM: 611505) centromere protein P i ( 288) 1873 418.6 6.8e-117
XP_011516991 (OMIM: 611505) PREDICTED: centromere ( 192) 1229 277.7 1.2e-74
NP_001273898 (OMIM: 611505) centromere protein P i ( 176) 1140 258.2 8e-69
XP_011516987 (OMIM: 611505) PREDICTED: centromere ( 224) 1004 228.5 8.8e-60
XP_016870204 (OMIM: 611505) PREDICTED: centromere ( 261) 1004 228.6 1e-59
NP_001273900 (OMIM: 611505) centromere protein P i ( 115) 645 149.9 2.1e-36
>>NP_001012267 (OMIM: 611505) centromere protein P isofo (288 aa)
initn: 1873 init1: 1873 opt: 1873 Z-score: 2219.6 bits: 418.6 E(85289): 6.8e-117
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)
10 20 30 40 50 60
pF1KE9 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT
190 200 210 220 230 240
250 260 270 280
pF1KE9 KVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALESLIKSLCAEENN
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALESLIKSLCAEENN
250 260 270 280
>>XP_011516991 (OMIM: 611505) PREDICTED: centromere prot (192 aa)
initn: 1229 init1: 1229 opt: 1229 Z-score: 1461.2 bits: 277.7 E(85289): 1.2e-74
Smith-Waterman score: 1229; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KE9 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT
::::::::
XP_011 KRTFKHLKPEQS
190
>>NP_001273898 (OMIM: 611505) centromere protein P isofo (176 aa)
initn: 1140 init1: 1140 opt: 1140 Z-score: 1356.6 bits: 258.2 E(85289): 8e-69
Smith-Waterman score: 1140; 100.0% identity (100.0% similar) in 176 aa overlap (113-288:1-176)
90 100 110 120 130 140
pF1KE9 KQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEFQILEIQNKERLSSAVTDLNIIM
::::::::::::::::::::::::::::::
NP_001 MVTFQLEFQILEIQNKERLSSAVTDLNIIM
10 20 30
150 160 170 180 190 200
pF1KE9 EPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYRKRTFKHLKEKYPDAVYLSEGPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYRKRTFKHLKEKYPDAVYLSEGPS
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE9 SCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSF
100 110 120 130 140 150
270 280
pF1KE9 RTLVGLLGIEAALESLIKSLCAEENN
::::::::::::::::::::::::::
NP_001 RTLVGLLGIEAALESLIKSLCAEENN
160 170
>>XP_011516987 (OMIM: 611505) PREDICTED: centromere prot (224 aa)
initn: 1004 init1: 1004 opt: 1004 Z-score: 1194.3 bits: 228.5 E(85289): 8.8e-60
Smith-Waterman score: 1006; 75.7% identity (84.7% similar) in 222 aa overlap (1-220:1-207)
10 20 30 40 50 60
pF1KE9 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR
:::::::::::::::::::::::::::::::::::: . : .: .: . :.:
XP_011 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRLGSH-----FVESDWYFRKGAEHR
130 140 150 160 170
190 200 210 220 230
pF1KE9 KRTFKHLKEKYPDAV--YLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDL
.. . . ::.. :.... :: . . :...:
XP_011 SEDLDFI----PDSTTWYITRS------GIAESYKSMFKFIINCQTVFQNDHTVLYSHQ
180 190 200 210 220
240 250 260 270 280
pF1KE9 LTKVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALESLIKSLCAEENN
>>XP_016870204 (OMIM: 611505) PREDICTED: centromere prot (261 aa)
initn: 1026 init1: 1004 opt: 1004 Z-score: 1193.3 bits: 228.6 E(85289): 1e-59
Smith-Waterman score: 1004; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KE9 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR
::::::::::::::::::::::::::::::::::::
XP_016 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRLGSHFVESDWYFRKGAEHRSEDLD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT
XP_016 FIPDSTTCKLPLLLEFLSSLSLLLCNLNVICLIMNLFLVFHYRSVVFQTGLVSLGFEKFL
190 200 210 220 230 240
>>NP_001273900 (OMIM: 611505) centromere protein P isofo (115 aa)
initn: 645 init1: 645 opt: 645 Z-score: 774.5 bits: 149.9 E(85289): 2.1e-36
Smith-Waterman score: 645; 99.0% identity (100.0% similar) in 101 aa overlap (188-288:15-115)
160 170 180 190 200 210
pF1KE9 EERKDLFMFFRSLHFFVEWFEYRKRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFE
.:::::::::::::::::::::::::::::
NP_001 MEAPSWSVLQRSGDEEKYPDAVYLSEGPSSCSMGIRSASRPGFE
10 20 30 40
220 230 240 250 260 270
pF1KE9 LVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALES
50 60 70 80 90 100
280
pF1KE9 LIKSLCAEENN
:::::::::::
NP_001 LIKSLCAEENN
110
288 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:26:56 2016 done: Mon Nov 7 03:26:56 2016
Total Scan time: 6.550 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]