FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9676, 288 aa
  1>>>pF1KE9676 288 - 288 aa - 288 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6420+/-0.000793; mu= 13.5648+/- 0.048
 mean_var=67.3537+/-13.386, 0's: 0 Z-trim(107.5): 16  B-trim: 2 in 1/52
 Lambda= 0.156276
 statistics sampled from 9610 (9616) to 9610 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS35063.1 CENPP gene_id:401541|Hs108|chr9        ( 288) 1873 431.0  5e-121
CCDS69618.1 CENPP gene_id:401541|Hs108|chr9        ( 115)  645 153.9 4.9e-38


>>CCDS35063.1 CENPP gene_id:401541|Hs108|chr9             (288 aa)
 initn: 1873 init1: 1873 opt: 1873  Z-score: 2286.3  bits: 431.0 E(32554): 5e-121
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 288 aa overlap (1-288:1-288)

               10        20        30        40        50        60
pF1KE9 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MDAELAEVRALQAEIAALRRACEDPPAPWEEKSRVQKSFQAIHQFNLEGWKSSKDLKNQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GHLESELSFLSTLTGINIRNHSKQTEDLTSTEMTEKSIRKVLQRHRLSGNCHMVTFQLEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QILEIQNKERLSSAVTDLNIIMEPTECSELSEFVSRAEERKDLFMFFRSLHFFVEWFEYR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE9 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFELVIVWRIQIDEDGKVFPKLDLLT
              190       200       210       220       230       240

              250       260       270       280        
pF1KE9 KVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALESLIKSLCAEENN
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALESLIKSLCAEENN
              250       260       270       280        

>>CCDS69618.1 CENPP gene_id:401541|Hs108|chr9             (115 aa)
 initn: 645 init1: 645 opt: 645  Z-score: 796.3  bits: 153.9 E(32554): 4.9e-38
Smith-Waterman score: 645; 99.0% identity (100.0% similar) in 101 aa overlap (188-288:15-115)

       160       170       180       190       200       210       
pF1KE9 EERKDLFMFFRSLHFFVEWFEYRKRTFKHLKEKYPDAVYLSEGPSSCSMGIRSASRPGFE
                                     .:::::::::::::::::::::::::::::
CCDS69                 MEAPSWSVLQRSGDEEKYPDAVYLSEGPSSCSMGIRSASRPGFE
                               10        20        30        40    

       220       230       240       250       260       270       
pF1KE9 LVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LVIVWRIQIDEDGKVFPKLDLLTKVPQRALELDKNRAIETAPLSFRTLVGLLGIEAALES
           50        60        70        80        90       100    

       280        
pF1KE9 LIKSLCAEENN
       :::::::::::
CCDS69 LIKSLCAEENN
          110     




288 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:26:55 2016 done: Mon Nov  7 03:26:55 2016
 Total Scan time:  2.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]