Result of FASTA (ccds) for
pFN21AE9672
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE9672, 1498 aa
1>>>pF1KE9672 1498 - 1498 aa - 1498 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6426+/-0.000982; mu= 18.0195+/- 0.060
mean_var=103.3789+/-20.184, 0's: 0 Z-trim(107.7): 26 B-trim: 6 in 1/48
Lambda= 0.126142
statistics sampled from 9701 (9712) to 9701 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.298), width: 16
Scan time: 5.160
The best scores are: opt bits E(32554)
CCDS31723.1 NCAPD3 gene_id:23310|Hs108|chr11 (1498) 9857 1805.4 0
>>CCDS31723.1 NCAPD3 gene_id:23310|Hs108|chr11 (1498 aa)
initn: 9857 init1: 9857 opt: 9857 Z-score: 9688.5 bits: 1805.4 E(32554): 0
Smith-Waterman score: 9857; 100.0% identity (100.0% similar) in 1498 aa overlap (1-1498:1-1498)
10 20 30 40 50 60
pF1KE9 MVALRGLGSGLQPWCPLDLRLEWVDTVWELDFTETEPLDPSIEAEIIETGLAAFTKLYES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MVALRGLGSGLQPWCPLDLRLEWVDTVWELDFTETEPLDPSIEAEIIETGLAAFTKLYES
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE9 LLPFATGEHGSMESIWTFFIENNVSHSTLVALFYHFVQIVHKKNVSVQYREYGLHAAGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LLPFATGEHGSMESIWTFFIENNVSHSTLVALFYHFVQIVHKKNVSVQYREYGLHAAGLY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE9 FLLLEVPGSVANQVFHPVMFDKCIQTLKKSWPQESNLNRKRKKEQPKSSQANPGRHRKRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FLLLEVPGSVANQVFHPVMFDKCIQTLKKSWPQESNLNRKRKKEQPKSSQANPGRHRKRG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE9 KPPRREDIEMDEIIEEQEDENICFSARDLSQIRNAIFHLLKNFLRLLPKFSLKEKPQCVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KPPRREDIEMDEIIEEQEDENICFSARDLSQIRNAIFHLLKNFLRLLPKFSLKEKPQCVQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE9 NCIEVFVSLTNFEPVLHECHVTQARALNQAKYIPELAYYGLYLLCSPIHGEGDKVISCVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NCIEVFVSLTNFEPVLHECHVTQARALNQAKYIPELAYYGLYLLCSPIHGEGDKVISCVF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE9 HQMLSVILMLEVGEGSHRAPLAVTSQVINCRNQAVQFISALVDELKESIFPVVRILLQHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HQMLSVILMLEVGEGSHRAPLAVTSQVINCRNQAVQFISALVDELKESIFPVVRILLQHI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE9 CAKVVDKSEYRTFAAQSLVQLLSKLPCGEYAMFIAWLYKYSRSSKIPHRVFTLDVVLALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CAKVVDKSEYRTFAAQSLVQLLSKLPCGEYAMFIAWLYKYSRSSKIPHRVFTLDVVLALL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE9 ELPEREVDNTLSLEHQKFLKHKFLVQEIMFDRCLDKAPTVRSKALSSFAHCLELTVTSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELPEREVDNTLSLEHQKFLKHKFLVQEIMFDRCLDKAPTVRSKALSSFAHCLELTVTSAS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE9 ESILELLINSPTFSVIESHPGTLLRNSSAFSYQRQTSNRSEPSGEINIDSSGETVGSGER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ESILELLINSPTFSVIESHPGTLLRNSSAFSYQRQTSNRSEPSGEINIDSSGETVGSGER
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE9 CVMAMLRRRIRDEKTNVRKSALQVLVSILKHCDVSGMKEDLWILQDQCRDPAVSVRKQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CVMAMLRRRIRDEKTNVRKSALQVLVSILKHCDVSGMKEDLWILQDQCRDPAVSVRKQAL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE9 QSLTELLMAQPRCVQIQKAWLRGVVPVVMDCESTVQEKALEFLDQLLLQNIRHHSHFHSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QSLTELLMAQPRCVQIQKAWLRGVVPVVMDCESTVQEKALEFLDQLLLQNIRHHSHFHSG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE9 DDSQVLAWALLTLLTTESQELSRYLNKAFHIWSKKEKFSPTFINNVISHTGTEHSAPAWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DDSQVLAWALLTLLTTESQELSRYLNKAFHIWSKKEKFSPTFINNVISHTGTEHSAPAWM
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE9 LLSKIAGSSPRLDYSRIIQSWEKISSQQNPNSNTLGHILCVIGHIAKHLPKSTRDKVTDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LLSKIAGSSPRLDYSRIIQSWEKISSQQNPNSNTLGHILCVIGHIAKHLPKSTRDKVTDA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE9 VKCKLNGFQWSLEVISSAVDALQRLCRASAETPAEEQELLTQVCGDVLSTCEHRLSNIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VKCKLNGFQWSLEVISSAVDALQRLCRASAETPAEEQELLTQVCGDVLSTCEHRLSNIVL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE9 KENGTGNMDEDLLVKYIFTLGDIAQLCPARVEKRIFLLIQSVLASSADADHSPSSQGSSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KENGTGNMDEDLLVKYIFTLGDIAQLCPARVEKRIFLLIQSVLASSADADHSPSSQGSSE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE9 APASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRELEVCEDVAVRNN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 APASQPPPQVRGSVMPSVIRAHAIITLGKLCLQHEDLAKKSIPALVRELEVCEDVAVRNN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE9 VIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQEEFVKWKGSLFFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VIIVMCDLCIRYTIMVDKYIPNISMCLKDSDPFIRKQTLILLTNLLQEEFVKWKGSLFFR
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE9 FVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEKHEKYNKFPQSER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FVSTLIDSHPDIASFGEFCLAHLLLKRNPVMFFQHFIECIFHFNNYEKHEKYNKFPQSER
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE9 EKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFADGILPLDLDASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EKRLFSLKGKSNKERRMKIYKFLLEHFTDEQRFNITSKICLSILACFADGILPLDLDASE
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE9 LLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQEAQKKLISQVQKRNFIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LLSDTFEVLSSKEIKLLAMRSKPDKDLLMEEDDMALANVVMQEAQKKLISQVQKRNFIEN
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE9 IIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKKYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IIPIIISLKTVLEKNKIPALRELMHYLREVMQDYRDELKDFFAVDKQLASELEYDMKKYQ
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE9 EQLVQEQELAKHADVAGTAGGAEVAPVAQVALCLETVPVPAGQENPAMSPAVSQPCTPRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EQLVQEQELAKHADVAGTAGGAEVAPVAQVALCLETVPVPAGQENPAMSPAVSQPCTPRA
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KE9 SAGHVAVSSPTPETGPLQRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLPFTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SAGHVAVSSPTPETGPLQRLLPKARPMSLSTIAILNSVKKAVESKSRHRSRSLGVLPFTL
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KE9 NSGSPEKTCSQVSSYSLEQESNGEIEHVTKRAISTPEKSISDVTFGAGVSYIGTPRTPSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NSGSPEKTCSQVSSYSLEQESNGEIEHVTKRAISTPEKSISDVTFGAGVSYIGTPRTPSS
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490
pF1KE9 AKEKIEGRSQGNDILCLSLPDKPPPQPQQWNVRSPARNKDTPACSRRSLRKTPLKTAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AKEKIEGRSQGNDILCLSLPDKPPPQPQQWNVRSPARNKDTPACSRRSLRKTPLKTAN
1450 1460 1470 1480 1490
1498 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:43:25 2016 done: Sun Nov 6 06:43:26 2016
Total Scan time: 5.160 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]